Wall clock time and date at job start Tue Mar 31 2020 18:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35900 * 116.99856 * 2 1 4 4 C 1.38820 * 120.01303 * 90.00368 * 3 2 1 5 5 C 1.50709 * 119.95294 * 0.02562 * 4 3 2 6 6 C 1.38178 * 120.09953 * 180.02562 * 4 3 2 7 7 C 1.38149 * 120.12698 * 359.97438 * 6 4 3 8 8 C 1.38944 * 120.03600 * 359.97438 * 7 6 4 9 9 N 1.39722 * 120.05232 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99543 * 336.07766 * 9 8 7 11 11 O 1.21372 * 120.00102 * 354.12448 * 10 9 8 12 12 C 1.49352 * 119.99707 * 174.40343 * 10 9 8 13 13 O 1.21361 * 120.00181 * 0.44227 * 12 10 9 14 14 N 1.34780 * 119.99810 * 180.43953 * 12 10 9 15 15 C 1.46494 * 119.99979 * 354.42907 * 14 12 10 16 16 C 1.46500 * 119.99747 * 174.42720 * 14 12 10 17 17 H 1.09003 * 109.47297 * 0.02562 * 16 14 12 18 18 C 1.52998 * 109.47252 * 120.00254 * 16 14 12 19 19 C 1.50705 * 109.47191 * 240.00152 * 16 14 12 20 20 H 1.08000 * 119.99714 * 359.97438 * 19 16 14 21 21 C 1.37874 * 120.00137 * 180.02562 * 19 16 14 22 22 N 1.31516 * 120.00247 * 0.02562 * 21 19 16 23 23 Si 1.86802 * 119.99969 * 179.97438 * 21 19 16 24 24 H 1.48504 * 109.46580 * 60.00245 * 23 21 19 25 25 H 1.48501 * 109.47241 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47530 * 300.00457 * 23 21 19 27 27 C 1.38563 * 120.02522 * 270.23951 * 3 2 1 28 28 C 1.50707 * 120.06278 * 0.02562 * 27 3 2 29 29 H 1.09000 * 109.47281 * 299.99401 * 1 2 3 30 30 H 1.09002 * 109.47444 * 59.99304 * 1 2 3 31 31 H 1.09003 * 109.47076 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46747 * 270.02302 * 5 4 3 33 33 H 1.08996 * 109.46756 * 30.01823 * 5 4 3 34 34 H 1.08994 * 109.47205 * 150.02249 * 5 4 3 35 35 H 1.08002 * 119.94170 * 180.02562 * 6 4 3 36 36 H 1.07998 * 119.98563 * 179.97438 * 7 6 4 37 37 H 0.96996 * 120.00384 * 156.07327 * 9 8 7 38 38 H 1.08998 * 109.47352 * 83.82266 * 15 14 12 39 39 H 1.09010 * 109.47019 * 203.81501 * 15 14 12 40 40 H 1.08998 * 109.47239 * 323.81159 * 15 14 12 41 41 H 1.09004 * 109.47236 * 299.99692 * 18 16 14 42 42 H 1.09003 * 109.47064 * 59.99742 * 18 16 14 43 43 H 1.09002 * 109.47448 * 180.02562 * 18 16 14 44 44 H 0.96999 * 120.00338 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.46721 * 270.23228 * 28 27 3 46 46 H 1.08994 * 109.46889 * 30.22826 * 28 27 3 47 47 H 1.09000 * 109.47400 * 150.22987 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3612 1.8296 1.2021 5 6 2.0193 1.1571 2.5068 6 6 2.9880 3.0610 1.2041 7 6 3.3035 3.6805 0.0103 8 6 2.9914 3.0657 -1.1960 9 7 3.3099 3.6921 -2.4036 10 6 3.4591 5.0309 -2.4494 11 8 3.2132 5.7028 -1.4690 12 6 3.9211 5.6881 -3.7084 13 8 4.1545 5.0175 -4.6927 14 7 4.0789 7.0259 -3.7515 15 6 3.6819 7.8476 -2.6056 16 6 4.6474 7.6583 -4.9445 17 1 4.8793 6.8935 -5.6857 18 6 3.6353 8.6450 -5.5301 19 6 5.9080 8.3946 -4.5703 20 1 6.2510 8.3921 -3.5463 21 6 6.6227 9.0723 -5.5351 22 7 6.2041 9.0767 -6.7819 23 14 8.1848 9.9855 -5.0712 24 1 9.1676 9.0281 -4.5030 25 1 8.7612 10.6265 -6.2804 26 1 7.8680 11.0273 -4.0615 27 6 2.3562 1.8309 -1.1997 28 6 2.0096 1.1641 -2.5060 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.0209 1.4609 2.8214 33 1 2.0456 0.0754 2.3758 34 1 2.7442 1.4488 3.2667 35 1 3.2325 3.5398 2.1408 36 1 3.7931 4.6431 0.0146 37 1 3.4237 3.1636 -3.2089 38 1 4.4884 7.8627 -1.8725 39 1 3.4769 8.8643 -2.9411 40 1 2.7849 7.4274 -2.1505 41 1 2.7235 8.1125 -5.8008 42 1 3.4029 9.4099 -4.7891 43 1 4.0581 9.1152 -6.4180 44 1 6.7067 9.5538 -7.4606 45 1 2.8400 0.5332 -2.8233 46 1 1.1173 0.5519 -2.3758 47 1 1.8211 1.9248 -3.2635 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190139481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:32 Heat of formation + Delta-G solvation = -84.063032 kcal Electronic energy + Delta-G solvation = -29103.213511 eV Core-core repulsion = 25058.540442 eV Total energy + Delta-G solvation = -4044.673070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.38248 -41.16695 -39.86470 -38.30594 -37.52812 -36.22169 -34.77300 -33.59204 -32.03857 -31.45550 -28.98281 -28.16110 -27.64058 -27.31924 -27.01215 -25.54582 -23.59957 -22.45122 -21.60684 -20.87066 -19.34793 -18.92203 -18.38587 -17.86652 -17.43859 -17.14611 -16.83632 -16.77998 -16.41097 -16.22563 -15.77230 -15.38702 -15.00720 -14.75042 -14.52875 -14.46936 -14.42603 -14.05834 -14.03920 -13.78089 -13.53899 -13.33829 -13.02093 -13.00135 -12.95663 -12.83731 -12.74140 -12.71253 -12.55642 -12.35473 -12.20881 -12.13856 -11.98366 -11.41162 -11.25635 -10.96116 -10.57948 -10.33954 -9.59648 -9.57791 -9.01041 -8.18441 -6.35235 -0.15406 0.17535 0.57304 1.21836 1.42723 1.44024 1.51969 2.04460 2.35555 2.45020 2.55142 2.96129 3.09906 3.22037 3.72920 3.86619 3.99687 4.24008 4.29662 4.40338 4.41753 4.49722 4.52610 4.60641 4.66709 4.68019 4.71245 4.78072 4.79487 4.84428 4.85529 4.96296 4.97819 5.07187 5.11952 5.20378 5.32007 5.33945 5.36050 5.41507 5.53616 5.59725 5.72570 5.87928 5.99025 6.07299 6.41360 6.53103 6.60648 6.70938 6.93727 7.35641 8.85942 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.002518 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.661313 B =11115.907362 C =11614.375838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.340 6.340 3 C 0.104 3.896 4 C -0.120 4.120 5 C -0.105 4.105 6 C -0.091 4.091 7 C -0.143 4.143 8 C 0.136 3.864 9 N -0.633 5.633 10 C 0.518 3.482 11 O -0.499 6.499 12 C 0.488 3.512 13 O -0.564 6.564 14 N -0.560 5.560 15 C 0.086 3.914 16 C 0.259 3.741 17 H 0.024 0.976 18 C -0.135 4.135 19 C -0.545 4.545 20 H 0.059 0.941 21 C 0.021 3.979 22 N -0.913 5.913 23 Si 0.964 3.036 24 H -0.277 1.277 25 H -0.281 1.281 26 H -0.265 1.265 27 C -0.132 4.132 28 C -0.112 4.112 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.153 0.847 36 H 0.137 0.863 37 H 0.426 0.574 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.025 0.975 42 H 0.048 0.952 43 H 0.075 0.925 44 H 0.267 0.733 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 -15.460 16.667 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.257 6.257 3 C 0.060 3.940 4 C -0.121 4.121 5 C -0.162 4.162 6 C -0.109 4.109 7 C -0.163 4.163 8 C 0.042 3.958 9 N -0.279 5.279 10 C 0.300 3.700 11 O -0.374 6.374 12 C 0.269 3.731 13 O -0.445 6.445 14 N -0.290 5.290 15 C -0.056 4.056 16 C 0.158 3.842 17 H 0.041 0.959 18 C -0.194 4.194 19 C -0.583 4.583 20 H 0.077 0.923 21 C -0.179 4.179 22 N -0.551 5.551 23 Si 0.789 3.211 24 H -0.203 1.203 25 H -0.206 1.206 26 H -0.189 1.189 27 C -0.135 4.135 28 C -0.169 4.169 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.134 0.866 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.170 0.830 36 H 0.155 0.845 37 H 0.266 0.734 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.044 0.956 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.983 -15.344 16.606 25.589 hybrid contribution 0.953 0.624 -0.791 1.386 sum -11.031 -14.720 15.815 24.258 Atomic orbital electron populations 1.23216 0.77410 1.04757 1.01226 1.85977 1.21316 1.24120 1.94322 1.18089 0.98415 0.86645 0.90887 1.20499 1.00709 0.94928 0.95997 1.20705 1.02612 1.00583 0.92275 1.21057 0.97790 0.94004 0.98099 1.21507 1.01719 1.01911 0.91192 1.17583 0.99628 0.93371 0.85218 1.43115 1.66520 1.06405 1.11828 1.20131 0.78263 0.82972 0.88599 1.90642 1.47508 1.62945 1.36272 1.20161 0.80674 0.83900 0.88316 1.90695 1.52984 1.63785 1.37019 1.48240 1.56858 1.05039 1.18911 1.22078 1.01056 0.95736 0.86707 1.18832 0.91783 0.91592 0.81972 0.95850 1.21918 0.96333 0.99004 1.02106 1.21474 1.08544 1.32837 0.95463 0.92273 1.25671 1.00754 0.96845 0.94672 1.69986 1.40412 1.42958 1.01738 0.85514 0.79030 0.78698 0.77827 1.20262 1.20622 1.18929 1.20025 1.01740 0.94465 0.97284 1.20703 1.03315 1.00492 0.92371 0.92774 0.93434 0.86577 0.90249 0.91009 0.90097 0.82957 0.84545 0.73435 0.92658 0.90729 0.88751 0.95621 0.93312 0.90665 0.92366 0.89969 0.89759 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.76 113.37 1.22 1.55 16 2 O -0.34 -6.33 8.68 -92.42 -0.80 -7.14 16 3 C 0.10 2.22 5.66 22.49 0.13 2.35 16 4 C -0.12 -2.35 5.90 -19.74 -0.12 -2.46 16 5 C -0.11 -1.40 9.79 71.24 0.70 -0.70 16 6 C -0.09 -1.90 9.69 22.23 0.22 -1.68 16 7 C -0.14 -3.77 8.72 22.42 0.20 -3.58 16 8 C 0.14 3.66 6.42 38.20 0.25 3.90 16 9 N -0.63 -18.45 4.97 -304.89 -1.52 -19.97 16 10 C 0.52 17.85 7.57 87.24 0.66 18.51 16 11 O -0.50 -17.12 10.38 -3.32 -0.03 -17.15 16 12 C 0.49 20.51 7.72 87.24 0.67 21.18 16 13 O -0.56 -26.50 15.83 -3.28 -0.05 -26.56 16 14 N -0.56 -24.61 2.75 -828.49 -2.28 -26.89 16 15 C 0.09 3.14 8.48 127.77 1.08 4.22 16 16 C 0.26 13.33 2.62 44.25 0.12 13.45 16 17 H 0.02 1.40 6.91 -2.39 -0.02 1.38 16 18 C -0.14 -6.42 8.96 71.98 0.64 -5.77 16 19 C -0.54 -29.43 8.37 25.60 0.21 -29.21 16 20 H 0.06 3.15 7.65 -2.91 -0.02 3.12 16 21 C 0.02 1.13 5.30 84.65 0.45 1.58 16 22 N -0.91 -51.30 11.32 21.45 0.24 -51.06 16 23 Si 0.96 42.59 29.54 68.60 2.03 44.62 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 27 C -0.13 -3.07 5.91 -19.64 -0.12 -3.19 16 28 C -0.11 -2.13 9.22 71.24 0.66 -1.48 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.57 7.23 -2.39 -0.02 0.55 16 31 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.97 7.53 -2.39 -0.02 0.95 16 34 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 35 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 36 H 0.14 3.99 5.73 -2.91 -0.02 3.97 16 37 H 0.43 11.57 6.85 -92.71 -0.64 10.94 16 38 H 0.05 1.99 8.13 -2.39 -0.02 1.97 16 39 H 0.07 2.65 6.44 -2.38 -0.02 2.63 16 40 H 0.09 3.13 5.83 -2.39 -0.01 3.11 16 41 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.05 2.12 6.67 -2.39 -0.02 2.10 16 43 H 0.07 3.93 6.07 -2.39 -0.01 3.91 16 44 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 45 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.08 1.37 6.30 -2.39 -0.02 1.35 16 47 H 0.06 1.25 6.98 -2.39 -0.02 1.23 16 Total: -1.00 -65.11 379.34 4.92 -60.19 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.37 Total: 25.28 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 6.97 Total: 18.67 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -3.55 Total: -97.91 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -0.89 Total: -50.84 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -65.11 4.92 -60.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190139481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.877 kcal (2) G-P(sol) polarization free energy of solvation -65.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds