Wall clock time and date at job start Tue Mar 31 2020 18:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38223 * 119.95278 * 2 1 4 4 C 1.38110 * 120.12964 * 179.76412 * 3 2 1 5 5 C 1.38985 * 120.03252 * 0.47302 * 4 3 2 6 6 N 1.39720 * 120.04520 * 179.79360 * 5 4 3 7 7 C 1.34781 * 119.99525 * 321.64162 * 6 5 4 8 8 O 1.21372 * 120.00200 * 4.72059 * 7 6 5 9 9 C 1.49359 * 119.99555 * 184.71900 * 7 6 5 10 10 O 1.21358 * 120.00019 * 0.02562 * 9 7 6 11 11 N 1.34773 * 119.99820 * 180.02562 * 9 7 6 12 12 C 1.46496 * 120.00169 * 180.02562 * 11 9 7 13 13 H 1.09004 * 109.46858 * 325.00039 * 12 11 9 14 14 C 1.52995 * 109.47270 * 85.00038 * 12 11 9 15 15 C 1.50707 * 109.47275 * 205.00191 * 12 11 9 16 16 H 1.07997 * 119.99577 * 354.34892 * 15 12 11 17 17 C 1.37875 * 119.99719 * 174.35252 * 15 12 11 18 18 N 1.31521 * 119.99753 * 161.57870 * 17 15 12 19 19 Si 1.86803 * 120.00401 * 341.85273 * 17 15 12 20 20 H 1.48498 * 109.46962 * 269.72761 * 19 17 15 21 21 H 1.48495 * 109.46906 * 29.72830 * 19 17 15 22 22 H 1.48497 * 109.46979 * 149.72590 * 19 17 15 23 23 C 1.38814 * 119.90726 * 359.50524 * 5 4 3 24 24 C 1.38616 * 119.86730 * 0.25775 * 23 5 4 25 25 O 1.35893 * 120.01620 * 180.02562 * 24 23 5 26 26 C 1.42901 * 117.00042 * 0.93449 * 25 24 23 27 27 C 1.53005 * 109.47215 * 154.97085 * 26 25 24 28 28 C 1.53003 * 109.47067 * 274.96971 * 26 25 24 29 29 H 1.08998 * 109.46732 * 270.02377 * 1 2 3 30 30 H 1.09000 * 109.46663 * 30.01908 * 1 2 3 31 31 H 1.09001 * 109.46985 * 150.01999 * 1 2 3 32 32 H 1.08001 * 119.93778 * 0.02562 * 3 2 1 33 33 H 1.07997 * 119.98049 * 180.25876 * 4 3 2 34 34 H 0.96998 * 120.00510 * 141.65557 * 6 5 4 35 35 H 0.97001 * 119.99930 * 0.02562 * 11 9 7 36 36 H 1.08999 * 109.47501 * 54.23394 * 14 12 11 37 37 H 1.09005 * 109.47208 * 174.23342 * 14 12 11 38 38 H 1.09005 * 109.47067 * 294.22885 * 14 12 11 39 39 H 0.96995 * 119.99859 * 355.20360 * 18 17 15 40 40 H 1.07995 * 120.06976 * 180.23516 * 23 5 4 41 41 H 1.08997 * 109.47335 * 34.96972 * 26 25 24 42 42 H 1.09002 * 109.46597 * 59.99658 * 27 26 25 43 43 H 1.08993 * 109.47214 * 179.97438 * 27 26 25 44 44 H 1.09002 * 109.46927 * 300.00436 * 27 26 25 45 45 H 1.08999 * 109.46872 * 180.02562 * 28 26 25 46 46 H 1.08997 * 109.47044 * 300.00179 * 28 26 25 47 47 H 1.09002 * 109.46890 * 60.00310 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1976 0.0000 4 6 3.5783 1.2019 0.0049 5 6 4.2776 0.0008 -0.0001 6 7 5.6748 0.0048 0.0006 7 6 6.3463 0.9253 -0.7195 8 8 5.7402 1.8026 -1.2993 9 6 7.8363 0.8656 -0.8040 10 8 8.4423 -0.0118 -0.2246 11 7 8.5078 1.7863 -1.5236 12 6 9.9692 1.7275 -1.6069 13 1 10.3732 1.3727 -0.6587 14 6 10.3781 0.7682 -2.7264 15 6 10.5114 3.1027 -1.9007 16 1 9.8333 3.9182 -2.1043 17 6 11.8730 3.3194 -1.9096 18 7 12.3654 4.3842 -2.5041 19 14 13.0189 2.0968 -1.0840 20 1 13.2223 2.4886 0.3338 21 1 12.4190 0.7396 -1.1414 22 1 14.3262 2.0904 -1.7883 23 6 3.5860 -1.2028 0.0004 24 6 2.1999 -1.2024 0.0005 25 8 1.5198 -2.3789 0.0014 26 6 2.2973 -3.5777 0.0232 27 6 1.4697 -4.7114 0.6321 28 6 2.6999 -3.9505 -1.4051 29 1 -0.3633 0.0004 1.0277 30 1 -0.3632 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6554 2.1319 0.0004 33 1 4.1150 2.1390 0.0091 34 1 6.1616 -0.6548 0.5190 35 1 8.0235 2.4879 -1.9863 36 1 9.8908 1.0649 -3.6552 37 1 11.4598 0.8019 -2.8568 38 1 10.0750 -0.2456 -2.4649 39 1 11.7788 4.9802 -2.9955 40 1 4.1268 -2.1376 0.0004 41 1 3.1931 -3.4190 0.6235 42 1 0.5738 -4.8701 0.0318 43 1 2.0625 -5.6259 0.6483 44 1 1.1828 -4.4458 1.6496 45 1 3.2925 -4.8651 -1.3885 46 1 1.8040 -4.1092 -2.0053 47 1 3.2895 -3.1428 -1.8388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280358769.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:41 Heat of formation + Delta-G solvation = -89.760213 kcal Electronic energy + Delta-G solvation = -28370.930199 eV Core-core repulsion = 24326.010081 eV Total energy + Delta-G solvation = -4044.920118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.10845 -40.24137 -38.67461 -37.63042 -35.65569 -34.95183 -33.37118 -32.53217 -31.70573 -30.19693 -29.91070 -27.67903 -26.92739 -25.05985 -24.35234 -23.75047 -21.97104 -21.16994 -20.59286 -19.76484 -18.94577 -18.44048 -17.34044 -16.55380 -16.32949 -15.97831 -15.84013 -15.56266 -15.32742 -15.08763 -14.54671 -14.03028 -13.97085 -13.80917 -13.60158 -13.33224 -13.27453 -12.84848 -12.80520 -12.75363 -12.61143 -12.49173 -12.29097 -12.10602 -11.94193 -11.78400 -11.55793 -11.47042 -11.32352 -11.14973 -10.95318 -10.62613 -10.26468 -10.16947 -9.80197 -9.31350 -9.17842 -8.73778 -8.47873 -8.40162 -8.03869 -6.65228 -4.29524 0.92663 1.26143 1.73939 2.51584 2.88580 3.35459 3.39431 3.41187 3.53667 3.62327 3.92935 4.35353 4.37728 4.48497 4.54427 4.70009 4.75262 4.86696 4.97337 5.01945 5.08980 5.13119 5.20423 5.30842 5.32134 5.35144 5.46082 5.49298 5.54498 5.67088 5.77573 5.80927 6.00407 6.12952 6.25460 6.27392 6.36202 6.39249 6.52342 6.63386 6.76919 6.91680 7.11738 7.17901 7.18718 7.47624 7.75007 8.15326 8.22474 8.43908 8.72825 9.38799 10.74478 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020452 B = 0.002344 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.716422 B =11942.875493 C =12873.066270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.133 4.133 3 C -0.065 4.065 4 C -0.149 4.149 5 C 0.180 3.820 6 N -0.653 5.653 7 C 0.509 3.491 8 O -0.500 6.500 9 C 0.496 3.504 10 O -0.537 6.537 11 N -0.661 5.661 12 C 0.240 3.760 13 H 0.048 0.952 14 C -0.154 4.154 15 C -0.623 4.623 16 H 0.065 0.935 17 C 0.043 3.957 18 N -0.892 5.892 19 Si 1.038 2.962 20 H -0.282 1.282 21 H -0.269 1.269 22 H -0.282 1.282 23 C -0.230 4.230 24 C 0.148 3.852 25 O -0.305 6.305 26 C 0.074 3.926 27 C -0.147 4.147 28 C -0.181 4.181 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.422 0.578 35 H 0.407 0.593 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.031 0.969 39 H 0.272 0.728 40 H 0.134 0.866 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.089 -15.334 5.921 28.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.134 4.134 3 C -0.084 4.084 4 C -0.169 4.169 5 C 0.086 3.914 6 N -0.300 5.300 7 C 0.292 3.708 8 O -0.373 6.373 9 C 0.274 3.726 10 O -0.416 6.416 11 N -0.310 5.310 12 C 0.137 3.863 13 H 0.066 0.934 14 C -0.213 4.213 15 C -0.661 4.661 16 H 0.083 0.917 17 C -0.164 4.164 18 N -0.524 5.524 19 Si 0.864 3.136 20 H -0.209 1.209 21 H -0.194 1.194 22 H -0.208 1.208 23 C -0.251 4.251 24 C 0.102 3.898 25 O -0.219 6.219 26 C 0.018 3.982 27 C -0.205 4.205 28 C -0.238 4.238 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.260 0.740 35 H 0.242 0.758 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.152 0.848 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.588 -15.596 6.220 27.349 hybrid contribution -1.258 0.294 -0.458 1.370 sum -22.846 -15.302 5.762 28.094 Atomic orbital electron populations 1.20561 0.90500 1.02617 1.02059 1.19258 0.96553 0.90193 1.07445 1.20777 0.93334 0.96957 0.97308 1.21176 0.94120 0.97771 1.03879 1.17426 0.82040 0.93490 0.98485 1.43201 1.04593 1.34348 1.47867 1.20846 0.89703 0.81564 0.78694 1.90755 1.69768 1.33342 1.43399 1.19721 0.86723 0.84109 0.81997 1.90720 1.69093 1.35554 1.46211 1.46262 1.10045 1.27763 1.46912 1.19301 0.74041 0.97310 0.95645 0.93396 1.22419 1.01401 0.97661 0.99814 1.22044 0.94472 0.93731 1.55849 0.91670 1.25688 0.96438 0.99438 0.94856 1.70819 1.38734 1.14190 1.28655 0.84155 0.76124 0.76266 0.77011 1.20866 1.19416 1.20811 1.20964 0.93386 0.97845 1.12866 1.18416 0.89399 0.85725 0.96293 1.86118 1.35543 1.11960 1.88305 1.22471 0.94933 0.83501 0.97301 1.21846 1.00759 0.96369 1.01487 1.22374 1.02571 1.02529 0.96328 0.91611 0.91770 0.91350 0.84914 0.84333 0.73991 0.75810 0.93430 0.92105 0.95002 0.91816 0.84806 0.90750 0.91471 0.90486 0.91635 0.90927 0.91409 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 9.79 36.01 0.35 -0.49 16 2 C -0.13 -1.43 5.90 -104.43 -0.62 -2.04 16 3 C -0.07 -0.72 9.69 -39.63 -0.38 -1.10 16 4 C -0.15 -1.95 8.67 -39.35 -0.34 -2.29 16 5 C 0.18 2.33 6.23 -83.77 -0.52 1.81 16 6 N -0.65 -8.82 5.31 -10.31 -0.05 -8.88 16 7 C 0.51 8.40 7.71 -11.63 -0.09 8.31 16 8 O -0.50 -8.94 14.12 5.48 0.08 -8.86 16 9 C 0.50 9.44 7.85 -11.63 -0.09 9.34 16 10 O -0.54 -11.00 16.14 5.49 0.09 -10.91 16 11 N -0.66 -13.67 5.06 -55.39 -0.28 -13.95 16 12 C 0.24 5.64 2.11 -69.08 -0.15 5.49 16 13 H 0.05 1.19 6.09 -51.93 -0.32 0.87 16 14 C -0.15 -3.38 8.84 37.16 0.33 -3.05 16 15 C -0.62 -16.64 9.00 -34.44 -0.31 -16.95 16 16 H 0.07 1.84 7.96 -52.49 -0.42 1.42 16 17 C 0.04 1.19 5.29 -17.82 -0.09 1.10 16 18 N -0.89 -26.17 13.70 55.43 0.76 -25.41 16 19 Si 1.04 24.24 26.24 -169.99 -4.46 19.78 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.27 -5.88 5.72 56.52 0.32 -5.56 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.23 -2.57 8.25 -39.23 -0.32 -2.90 16 24 C 0.15 1.63 6.57 -39.24 -0.26 1.37 16 25 O -0.31 -3.04 8.84 -19.40 -0.17 -3.21 16 26 C 0.07 0.56 2.85 -26.73 -0.08 0.48 16 27 C -0.15 -0.83 9.56 37.16 0.36 -0.47 16 28 C -0.18 -1.30 9.24 37.16 0.34 -0.96 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.07 0.58 7.53 -51.93 -0.39 0.19 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.14 1.97 6.47 -52.49 -0.34 1.63 16 34 H 0.42 4.98 8.30 -40.82 -0.34 4.64 16 35 H 0.41 8.06 7.99 -40.82 -0.33 7.73 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.34 5.37 -51.93 -0.28 1.06 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.27 7.91 8.73 -40.82 -0.36 7.56 16 40 H 0.13 1.27 5.59 -52.49 -0.29 0.97 16 41 H 0.07 0.53 6.07 -51.93 -0.32 0.22 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.56 7.25 -51.93 -0.38 0.18 16 LS Contribution 385.49 15.07 5.81 5.81 Total: -1.00 -30.82 385.49 -6.95 -37.77 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.85 Total: 10.19 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -1.87 Total: -2.34 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.42 Total: -48.23 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.01 Total: -22.98 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -4.46 Total: 19.78 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.82 -6.95 -37.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280358769.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.986 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds