Wall clock time and date at job start Tue Mar 31 2020 18:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38223 * 119.95278 * 2 1 4 4 C 1.38110 * 120.12964 * 179.76412 * 3 2 1 5 5 C 1.38985 * 120.03252 * 0.47302 * 4 3 2 6 6 N 1.39720 * 120.04520 * 179.79360 * 5 4 3 7 7 C 1.34781 * 119.99525 * 321.64162 * 6 5 4 8 8 O 1.21372 * 120.00200 * 4.72059 * 7 6 5 9 9 C 1.49359 * 119.99555 * 184.71900 * 7 6 5 10 10 O 1.21358 * 120.00019 * 0.02562 * 9 7 6 11 11 N 1.34773 * 119.99820 * 180.02562 * 9 7 6 12 12 C 1.46496 * 120.00169 * 180.02562 * 11 9 7 13 13 H 1.09004 * 109.46858 * 325.00039 * 12 11 9 14 14 C 1.52995 * 109.47270 * 85.00038 * 12 11 9 15 15 C 1.50707 * 109.47275 * 205.00191 * 12 11 9 16 16 H 1.07997 * 119.99577 * 354.34892 * 15 12 11 17 17 C 1.37875 * 119.99719 * 174.35252 * 15 12 11 18 18 N 1.31521 * 119.99753 * 161.57870 * 17 15 12 19 19 Si 1.86803 * 120.00401 * 341.85273 * 17 15 12 20 20 H 1.48498 * 109.46962 * 269.72761 * 19 17 15 21 21 H 1.48495 * 109.46906 * 29.72830 * 19 17 15 22 22 H 1.48497 * 109.46979 * 149.72590 * 19 17 15 23 23 C 1.38814 * 119.90726 * 359.50524 * 5 4 3 24 24 C 1.38616 * 119.86730 * 0.25775 * 23 5 4 25 25 O 1.35893 * 120.01620 * 180.02562 * 24 23 5 26 26 C 1.42901 * 117.00042 * 0.93449 * 25 24 23 27 27 C 1.53005 * 109.47215 * 154.97085 * 26 25 24 28 28 C 1.53003 * 109.47067 * 274.96971 * 26 25 24 29 29 H 1.08998 * 109.46732 * 270.02377 * 1 2 3 30 30 H 1.09000 * 109.46663 * 30.01908 * 1 2 3 31 31 H 1.09001 * 109.46985 * 150.01999 * 1 2 3 32 32 H 1.08001 * 119.93778 * 0.02562 * 3 2 1 33 33 H 1.07997 * 119.98049 * 180.25876 * 4 3 2 34 34 H 0.96998 * 120.00510 * 141.65557 * 6 5 4 35 35 H 0.97001 * 119.99930 * 0.02562 * 11 9 7 36 36 H 1.08999 * 109.47501 * 54.23394 * 14 12 11 37 37 H 1.09005 * 109.47208 * 174.23342 * 14 12 11 38 38 H 1.09005 * 109.47067 * 294.22885 * 14 12 11 39 39 H 0.96995 * 119.99859 * 355.20360 * 18 17 15 40 40 H 1.07995 * 120.06976 * 180.23516 * 23 5 4 41 41 H 1.08997 * 109.47335 * 34.96972 * 26 25 24 42 42 H 1.09002 * 109.46597 * 59.99658 * 27 26 25 43 43 H 1.08993 * 109.47214 * 179.97438 * 27 26 25 44 44 H 1.09002 * 109.46927 * 300.00436 * 27 26 25 45 45 H 1.08999 * 109.46872 * 180.02562 * 28 26 25 46 46 H 1.08997 * 109.47044 * 300.00179 * 28 26 25 47 47 H 1.09002 * 109.46890 * 60.00310 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1976 0.0000 4 6 3.5783 1.2019 0.0049 5 6 4.2776 0.0008 -0.0001 6 7 5.6748 0.0048 0.0006 7 6 6.3463 0.9253 -0.7195 8 8 5.7402 1.8026 -1.2993 9 6 7.8363 0.8656 -0.8040 10 8 8.4423 -0.0118 -0.2246 11 7 8.5078 1.7863 -1.5236 12 6 9.9692 1.7275 -1.6069 13 1 10.3732 1.3727 -0.6587 14 6 10.3781 0.7682 -2.7264 15 6 10.5114 3.1027 -1.9007 16 1 9.8333 3.9182 -2.1043 17 6 11.8730 3.3194 -1.9096 18 7 12.3654 4.3842 -2.5041 19 14 13.0189 2.0968 -1.0840 20 1 13.2223 2.4886 0.3338 21 1 12.4190 0.7396 -1.1414 22 1 14.3262 2.0904 -1.7883 23 6 3.5860 -1.2028 0.0004 24 6 2.1999 -1.2024 0.0005 25 8 1.5198 -2.3789 0.0014 26 6 2.2973 -3.5777 0.0232 27 6 1.4697 -4.7114 0.6321 28 6 2.6999 -3.9505 -1.4051 29 1 -0.3633 0.0004 1.0277 30 1 -0.3632 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6554 2.1319 0.0004 33 1 4.1150 2.1390 0.0091 34 1 6.1616 -0.6548 0.5190 35 1 8.0235 2.4879 -1.9863 36 1 9.8908 1.0649 -3.6552 37 1 11.4598 0.8019 -2.8568 38 1 10.0750 -0.2456 -2.4649 39 1 11.7788 4.9802 -2.9955 40 1 4.1268 -2.1376 0.0004 41 1 3.1931 -3.4190 0.6235 42 1 0.5738 -4.8701 0.0318 43 1 2.0625 -5.6259 0.6483 44 1 1.1828 -4.4458 1.6496 45 1 3.2925 -4.8651 -1.3885 46 1 1.8040 -4.1092 -2.0053 47 1 3.2895 -3.1428 -1.8388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280358769.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:40 Heat of formation + Delta-G solvation = -110.225975 kcal Electronic energy + Delta-G solvation = -28371.817661 eV Core-core repulsion = 24326.010081 eV Total energy + Delta-G solvation = -4045.807580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.25077 -41.28480 -40.01455 -38.63412 -37.19700 -36.26487 -34.52319 -34.01771 -32.60093 -31.73090 -31.03120 -28.21902 -27.89809 -26.95086 -25.68445 -24.56640 -23.17977 -22.03774 -21.87254 -21.31009 -20.37931 -19.57985 -19.03236 -17.87133 -17.41104 -17.06391 -16.82094 -16.73482 -16.48895 -16.22349 -15.61894 -15.41677 -15.08333 -14.92412 -14.73165 -14.62665 -14.56693 -14.29006 -14.00276 -13.60420 -13.50324 -13.38900 -13.32894 -13.23234 -13.11398 -12.95116 -12.82735 -12.49181 -12.42618 -12.26993 -12.11779 -11.89620 -11.60228 -11.57672 -11.20341 -11.17526 -10.77782 -10.54948 -10.17769 -9.63306 -8.95287 -8.84166 -6.48596 -0.14033 0.35263 0.49182 1.21054 1.50306 1.51647 1.72182 2.02114 2.18861 2.44330 2.58449 2.66859 2.97441 3.33941 3.73632 3.79929 3.92133 4.00047 4.06974 4.18796 4.20769 4.35879 4.42010 4.47875 4.64656 4.68061 4.68805 4.72332 4.80990 4.87399 4.88204 4.91629 4.97644 5.00093 5.05735 5.20321 5.26430 5.27598 5.32098 5.35174 5.40111 5.50403 5.52647 5.74476 5.90628 5.97250 6.35124 6.43064 6.46080 6.64524 6.90751 7.27427 8.54843 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020452 B = 0.002344 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.716422 B =11942.875493 C =12873.066270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.135 4.135 3 C -0.066 4.066 4 C -0.166 4.166 5 C 0.158 3.842 6 N -0.635 5.635 7 C 0.517 3.483 8 O -0.517 6.517 9 C 0.501 3.499 10 O -0.548 6.548 11 N -0.669 5.669 12 C 0.242 3.758 13 H 0.041 0.959 14 C -0.150 4.150 15 C -0.622 4.622 16 H 0.037 0.963 17 C -0.003 4.003 18 N -0.923 5.923 19 Si 1.075 2.925 20 H -0.274 1.274 21 H -0.244 1.244 22 H -0.279 1.279 23 C -0.224 4.224 24 C 0.142 3.858 25 O -0.310 6.310 26 C 0.065 3.935 27 C -0.144 4.144 28 C -0.178 4.178 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.154 0.846 33 H 0.122 0.878 34 H 0.430 0.570 35 H 0.409 0.591 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.259 0.741 40 H 0.150 0.850 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.560 -17.898 6.792 31.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.136 4.136 3 C -0.084 4.084 4 C -0.186 4.186 5 C 0.064 3.936 6 N -0.282 5.282 7 C 0.299 3.701 8 O -0.392 6.392 9 C 0.280 3.720 10 O -0.427 6.427 11 N -0.318 5.318 12 C 0.139 3.861 13 H 0.059 0.941 14 C -0.208 4.208 15 C -0.660 4.660 16 H 0.055 0.945 17 C -0.204 4.204 18 N -0.556 5.556 19 Si 0.895 3.105 20 H -0.199 1.199 21 H -0.168 1.168 22 H -0.205 1.205 23 C -0.245 4.245 24 C 0.096 3.904 25 O -0.224 6.224 26 C 0.010 3.990 27 C -0.201 4.201 28 C -0.236 4.236 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.172 0.828 33 H 0.140 0.860 34 H 0.270 0.730 35 H 0.245 0.755 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.167 0.833 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.114 0.886 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -23.111 -18.195 7.110 30.261 hybrid contribution -0.985 1.058 -0.703 1.607 sum -24.095 -17.137 6.407 30.254 Atomic orbital electron populations 1.20603 0.88710 1.03255 1.02938 1.19618 0.97952 0.89961 1.06089 1.21001 0.92599 0.98173 0.96641 1.21187 0.95134 0.97223 1.05093 1.17555 0.81386 0.94248 1.00401 1.43011 1.05078 1.33383 1.46758 1.20241 0.88345 0.82192 0.79313 1.90759 1.69583 1.34277 1.44595 1.20018 0.87887 0.83179 0.80868 1.90704 1.69827 1.35842 1.46377 1.46101 1.09134 1.28683 1.47890 1.19071 0.75668 0.95579 0.95822 0.94103 1.22325 1.01344 0.97968 0.99208 1.22184 0.94249 0.94763 1.54777 0.94476 1.26969 0.98469 1.00196 0.94742 1.70931 1.38714 1.15440 1.30557 0.83696 0.74708 0.75557 0.76490 1.19943 1.16793 1.20460 1.21070 0.93648 0.97773 1.11968 1.18581 0.89413 0.86476 0.95919 1.86132 1.36066 1.12207 1.88038 1.22740 0.95411 0.83130 0.97743 1.21860 1.00799 0.96230 1.01199 1.22365 1.02545 1.02708 0.95959 0.90510 0.90374 0.91486 0.82817 0.85982 0.73001 0.75545 0.93111 0.92242 0.93404 0.93182 0.83257 0.90325 0.91444 0.88646 0.91672 0.89172 0.91473 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 9.79 71.24 0.70 -0.72 16 2 C -0.13 -2.65 5.90 -19.74 -0.12 -2.77 16 3 C -0.07 -1.36 9.69 22.24 0.22 -1.15 16 4 C -0.17 -4.27 8.67 22.42 0.19 -4.08 16 5 C 0.16 3.95 6.23 38.20 0.24 4.19 16 6 N -0.63 -16.61 5.31 -304.88 -1.62 -18.23 16 7 C 0.52 16.83 7.71 87.24 0.67 17.50 16 8 O -0.52 -18.58 14.12 -3.31 -0.05 -18.63 16 9 C 0.50 18.70 7.85 87.24 0.68 19.38 16 10 O -0.55 -21.70 16.14 -3.27 -0.05 -21.75 16 11 N -0.67 -27.55 5.06 -447.53 -2.27 -29.82 16 12 C 0.24 11.25 2.11 44.25 0.09 11.34 16 13 H 0.04 1.98 6.09 -2.39 -0.01 1.96 16 14 C -0.15 -6.34 8.84 71.98 0.64 -5.70 16 15 C -0.62 -33.66 9.00 25.60 0.23 -33.43 16 16 H 0.04 2.17 7.96 -2.91 -0.02 2.15 16 17 C 0.00 -0.14 5.29 84.65 0.45 0.31 16 18 N -0.92 -55.25 13.70 21.45 0.29 -54.95 16 19 Si 1.07 48.15 26.24 68.60 1.80 49.95 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 21 H -0.24 -9.89 5.72 99.48 0.57 -9.33 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 C -0.22 -4.69 8.25 22.50 0.19 -4.51 16 24 C 0.14 2.91 6.57 22.49 0.15 3.06 16 25 O -0.31 -5.59 8.84 -92.34 -0.82 -6.40 16 26 C 0.07 0.85 2.85 30.60 0.09 0.93 16 27 C -0.14 -1.26 9.56 71.98 0.69 -0.58 16 28 C -0.18 -2.23 9.24 71.98 0.66 -1.56 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 31 H 0.07 1.00 7.53 -2.39 -0.02 0.98 16 32 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 33 H 0.12 3.52 6.47 -2.91 -0.02 3.50 16 34 H 0.43 9.60 8.30 -92.71 -0.77 8.83 16 35 H 0.41 16.45 7.99 -92.71 -0.74 15.71 16 36 H 0.05 2.07 8.14 -2.39 -0.02 2.06 16 37 H 0.06 2.51 5.37 -2.38 -0.01 2.49 16 38 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.26 15.66 8.73 -92.71 -0.81 14.85 16 40 H 0.15 2.55 5.59 -2.91 -0.02 2.53 16 41 H 0.08 0.95 6.07 -2.39 -0.01 0.94 16 42 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.05 0.76 7.25 -2.39 -0.02 0.74 16 Total: -1.00 -66.07 385.49 2.39 -63.68 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -0.67 Total: 33.93 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 5.77 Total: 2.22 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -3.59 Total: -103.00 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -0.92 Total: -46.78 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 1.80 Total: 49.95 kcal Total: -66.07 2.39 -63.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280358769.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.547 kcal (2) G-P(sol) polarization free energy of solvation -66.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds