Wall clock time and date at job start Tue Mar 31 2020 18:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 117.00189 * 2 1 4 4 C 1.38753 * 120.05351 * 359.97438 * 3 2 1 5 5 C 1.38127 * 119.94475 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.97413 * 179.97438 * 5 4 3 7 7 C 1.38292 * 120.05220 * 0.02562 * 5 4 3 8 8 C 1.38243 * 120.11200 * 359.70203 * 7 5 4 9 9 C 1.38170 * 120.05476 * 0.55146 * 8 7 5 10 10 C 1.50703 * 120.02679 * 179.74760 * 9 8 7 11 11 N 1.46505 * 109.47064 * 259.72348 * 10 9 8 12 12 C 1.34771 * 119.99622 * 179.97438 * 11 10 9 13 13 O 1.21348 * 120.00744 * 0.02562 * 12 11 10 14 14 C 1.49457 * 119.99493 * 180.02562 * 12 11 10 15 15 O 1.21347 * 120.00233 * 0.02562 * 14 12 11 16 16 N 1.34780 * 119.99667 * 179.97438 * 14 12 11 17 17 C 1.46505 * 119.99795 * 179.97438 * 16 14 12 18 18 C 1.53005 * 109.46784 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.46632 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.47170 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99528 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00568 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99342 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00473 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46966 * 59.99663 * 24 22 20 26 26 H 1.48492 * 109.47227 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46926 * 300.00250 * 24 22 20 28 28 H 1.08998 * 109.47334 * 300.00838 * 1 2 3 29 29 H 1.09003 * 109.46771 * 60.00196 * 1 2 3 30 30 H 1.09003 * 109.47374 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.03245 * 359.97438 * 4 3 2 32 32 H 1.09001 * 109.46885 * 89.99909 * 6 5 4 33 33 H 1.08999 * 109.46496 * 209.99830 * 6 5 4 34 34 H 1.08998 * 109.47165 * 329.99811 * 6 5 4 35 35 H 1.08000 * 119.93938 * 180.02562 * 7 5 4 36 36 H 1.07999 * 119.97412 * 180.27497 * 8 7 5 37 37 H 1.09002 * 109.47152 * 139.72431 * 10 9 8 38 38 H 1.09001 * 109.46980 * 19.72531 * 10 9 8 39 39 H 0.96996 * 119.99606 * 0.02562 * 11 10 9 40 40 H 0.96995 * 120.00011 * 0.02562 * 16 14 12 41 41 H 1.09001 * 109.46919 * 300.00467 * 17 16 14 42 42 H 1.08992 * 109.47069 * 60.00263 * 17 16 14 43 43 H 1.08992 * 109.46876 * 299.99831 * 18 17 16 44 44 H 1.08992 * 109.47199 * 60.00552 * 18 17 16 45 45 H 1.09001 * 109.46741 * 299.99831 * 19 18 17 46 46 H 1.09002 * 109.47398 * 59.99728 * 19 18 17 47 47 H 0.97008 * 119.99500 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 1.1020 4.8699 -0.0022 7 6 3.3020 3.6758 -0.0016 8 6 4.0560 2.5171 0.0046 9 6 3.4311 1.2848 -0.0001 10 6 4.2537 0.0221 0.0009 11 7 4.3193 -0.5192 -1.3589 12 6 5.0072 -1.6526 -1.6005 13 8 5.5718 -2.2252 -0.6918 14 6 5.0745 -2.2044 -2.9879 15 8 4.5103 -1.6316 -3.8968 16 7 5.7629 -3.3377 -3.2297 17 6 5.8284 -3.8789 -4.5895 18 6 6.6642 -5.1605 -4.5885 19 6 6.7332 -5.7254 -6.0087 20 6 7.5557 -6.9881 -6.0078 21 1 7.9866 -7.3511 -5.0863 22 6 7.7583 -7.6799 -7.1830 23 7 7.2332 -7.2380 -8.3049 24 14 8.7786 -9.2446 -7.1819 25 1 8.1508 -10.2442 -6.2809 26 1 8.8455 -9.7929 -8.5603 27 1 10.1511 -8.9402 -6.7036 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2128 2.3204 -0.0014 32 1 0.9041 5.1755 1.0252 33 1 1.6520 5.6581 -0.5163 34 1 0.1577 4.6910 -0.5164 35 1 3.7923 4.6381 -0.0016 36 1 5.1344 2.5751 0.0087 37 1 3.7924 -0.7116 0.6621 38 1 5.2612 0.2451 0.3522 39 1 3.8682 -0.0613 -2.0854 40 1 6.2142 -3.7953 -2.5032 41 1 4.8210 -4.1026 -4.9404 42 1 6.2889 -3.1450 -5.2508 43 1 7.6715 -4.9371 -4.2374 44 1 6.2033 -5.8943 -3.9273 45 1 5.7258 -5.9487 -6.3602 46 1 7.1942 -4.9914 -6.6697 47 1 7.3760 -7.7245 -9.1319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286741871.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:09 Heat of formation + Delta-G solvation = -103.033330 kcal Electronic energy + Delta-G solvation = -27168.107431 eV Core-core repulsion = 23122.611748 eV Total energy + Delta-G solvation = -4045.495684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.94302 -40.34156 -38.44819 -38.04456 -35.90238 -35.27640 -33.36328 -32.89072 -31.21009 -30.60165 -29.10905 -27.96519 -27.14028 -25.47004 -23.89610 -22.72464 -22.35972 -21.43904 -20.73255 -20.10284 -18.53709 -17.85436 -16.93710 -16.82694 -16.35034 -16.17408 -16.01537 -15.90237 -15.33988 -14.84607 -14.77319 -14.74633 -14.42848 -14.34671 -14.13342 -13.71548 -13.65779 -13.19886 -12.98941 -12.64129 -12.56340 -12.30320 -12.28176 -11.86895 -11.83169 -11.75461 -11.62019 -11.39587 -11.28135 -10.87612 -10.73072 -10.61690 -9.87202 -9.77540 -9.41117 -9.36110 -9.21325 -9.11324 -8.92508 -8.58927 -8.35879 -6.00861 -4.03851 0.71754 0.97954 1.51260 2.47471 2.83029 3.24363 3.31639 3.33931 3.38342 3.40796 3.85437 4.13301 4.30045 4.43683 4.45678 4.57984 4.61318 4.70360 4.73759 4.77378 5.07138 5.09195 5.10946 5.14639 5.21623 5.27262 5.34994 5.44501 5.63368 5.64288 5.72850 5.79967 5.97177 6.06651 6.11348 6.11594 6.31593 6.32641 6.57379 6.73667 6.90799 6.97962 7.02856 7.48364 7.63577 7.75695 7.81055 7.97535 8.12437 8.38946 9.02406 9.60336 11.10338 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026747 B = 0.001628 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.610213 B =17190.129210 C =17279.396057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.152 3.848 4 C -0.213 4.213 5 C -0.038 4.038 6 C -0.118 4.118 7 C -0.161 4.161 8 C -0.055 4.055 9 C -0.151 4.151 10 C 0.172 3.828 11 N -0.695 5.695 12 C 0.509 3.491 13 O -0.523 6.523 14 C 0.501 3.499 15 O -0.527 6.527 16 N -0.692 5.692 17 C 0.114 3.886 18 C -0.123 4.123 19 C 0.024 3.976 20 C -0.523 4.523 21 H 0.056 0.944 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.894 3.106 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.130 0.870 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.413 0.587 40 H 0.411 0.589 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.210 24.995 20.656 35.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.106 3.894 4 C -0.232 4.232 5 C -0.038 4.038 6 C -0.175 4.175 7 C -0.179 4.179 8 C -0.073 4.073 9 C -0.152 4.152 10 C 0.049 3.951 11 N -0.348 5.348 12 C 0.289 3.711 13 O -0.399 6.399 14 C 0.280 3.720 15 O -0.404 6.404 16 N -0.344 5.344 17 C -0.008 4.008 18 C -0.161 4.161 19 C -0.013 4.013 20 C -0.562 4.562 21 H 0.074 0.926 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.722 3.278 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.148 0.852 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.144 0.856 36 H 0.151 0.849 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.249 0.751 40 H 0.247 0.753 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.142 24.725 20.456 35.068 hybrid contribution 0.215 -0.714 -0.093 0.752 sum -13.926 24.011 20.363 34.426 Atomic orbital electron populations 1.23112 0.78050 1.04366 1.01339 1.86150 1.21599 1.26378 1.88010 1.18866 0.91625 0.84477 0.94478 1.21117 1.00087 0.91688 1.10287 1.19786 0.94055 0.94589 0.95366 1.20854 0.99485 0.94524 1.02627 1.20959 0.93118 0.98569 1.05274 1.20964 1.00168 0.90732 0.95475 1.19159 0.90539 0.95402 1.10141 1.20061 0.99331 0.92106 0.83585 1.45793 1.52403 1.25370 1.11272 1.20313 0.79709 0.81514 0.89531 1.90755 1.44444 1.58871 1.45781 1.20028 0.80780 0.82459 0.88687 1.90754 1.44846 1.59224 1.45555 1.46062 1.50855 1.24495 1.12972 1.21834 1.01689 0.96775 0.80521 1.21926 0.98126 0.93526 1.02497 1.19030 0.97563 0.95699 0.89034 1.21172 1.32256 1.08604 0.94142 0.92613 1.25023 0.95949 0.97820 0.95630 1.69960 1.44758 1.39689 0.98896 0.86627 0.80758 0.83445 0.76986 1.20234 1.21288 1.20235 0.92594 0.92440 0.87936 0.85227 0.90762 0.91063 0.91382 0.85565 0.84869 0.89863 0.90159 0.75131 0.75317 0.91153 0.91126 0.92425 0.92426 0.96203 0.96195 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -2.83 9.73 -19.43 -0.19 -3.02 16 3 C 0.15 1.34 6.66 -39.22 -0.26 1.08 16 4 C -0.21 -1.55 8.69 -39.43 -0.34 -1.89 16 5 C -0.04 -0.25 5.88 -104.64 -0.62 -0.86 16 6 C -0.12 -0.50 10.01 36.01 0.36 -0.14 16 7 C -0.16 -1.07 9.70 -39.56 -0.38 -1.45 16 8 C -0.05 -0.40 9.67 -39.60 -0.38 -0.78 16 9 C -0.15 -1.32 5.26 -104.47 -0.55 -1.87 16 10 C 0.17 1.69 5.47 -5.19 -0.03 1.66 16 11 N -0.69 -8.03 5.54 -61.90 -0.34 -8.37 16 12 C 0.51 7.16 7.89 -11.58 -0.09 7.07 16 13 O -0.52 -8.23 16.48 5.50 0.09 -8.14 16 14 C 0.50 7.88 7.89 -11.58 -0.09 7.79 16 15 O -0.53 -9.37 16.48 5.50 0.09 -9.28 16 16 N -0.69 -10.81 5.55 -60.72 -0.34 -11.15 16 17 C 0.11 2.01 5.67 -4.04 -0.02 1.99 16 18 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 19 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 20 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 21 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 24 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.16 16 29 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.13 0.71 6.30 -52.49 -0.33 0.38 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 34 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 35 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.13 0.75 8.03 -52.49 -0.42 0.33 16 37 H 0.08 0.89 7.86 -51.93 -0.41 0.48 16 38 H 0.08 0.73 8.00 -51.93 -0.42 0.31 16 39 H 0.41 4.63 7.94 -40.82 -0.32 4.31 16 40 H 0.41 5.87 7.94 -40.82 -0.32 5.55 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -33.55 402.13 -8.23 -41.78 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.21 Total: 3.43 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.11 Total: -1.83 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.06 Total: -45.59 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.01 Total: -20.44 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.55 -8.23 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286741871.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.255 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds