Wall clock time and date at job start Tue Mar 31 2020 18:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35958 * 116.99929 * 2 1 4 4 C 1.38551 * 120.08726 * 359.97438 * 3 2 1 5 5 C 1.38237 * 120.01467 * 180.23821 * 4 3 2 6 6 C 1.38305 * 120.20053 * 359.48339 * 5 4 3 7 7 C 1.50698 * 119.91402 * 180.25904 * 6 5 4 8 8 C 1.38162 * 120.16822 * 0.51598 * 6 5 4 9 9 C 1.38794 * 119.98111 * 359.74473 * 8 6 5 10 10 N 1.39888 * 120.09855 * 179.97438 * 9 8 6 11 11 C 1.34773 * 119.99915 * 325.34208 * 10 9 8 12 12 O 1.21393 * 120.00203 * 4.46269 * 11 10 9 13 13 C 1.49334 * 120.00176 * 184.46925 * 11 10 9 14 14 O 1.21357 * 119.99757 * 359.97438 * 13 11 10 15 15 N 1.34773 * 120.00176 * 179.97438 * 13 11 10 16 16 C 1.46502 * 119.99911 * 179.97438 * 15 13 11 17 17 C 1.53007 * 109.46859 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.46950 * 299.99800 * 17 16 15 19 19 C 1.53002 * 109.47185 * 60.00123 * 17 16 15 20 20 C 1.50704 * 109.46671 * 179.97438 * 17 16 15 21 21 H 1.07993 * 120.00278 * 0.02562 * 20 17 16 22 22 C 1.37882 * 119.99471 * 179.97438 * 20 17 16 23 23 N 1.31510 * 120.00046 * 0.02562 * 22 20 17 24 24 Si 1.86797 * 119.99581 * 180.02562 * 22 20 17 25 25 H 1.48502 * 109.47130 * 90.00613 * 24 22 20 26 26 H 1.48508 * 109.47147 * 210.00591 * 24 22 20 27 27 H 1.48505 * 109.47425 * 330.00470 * 24 22 20 28 28 H 1.08996 * 109.47740 * 300.00662 * 1 2 3 29 29 H 1.09005 * 109.46661 * 60.00613 * 1 2 3 30 30 H 1.09005 * 109.47096 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.98968 * 359.95543 * 4 3 2 32 32 H 1.08005 * 119.89889 * 179.72705 * 5 4 3 33 33 H 1.09002 * 109.47042 * 270.25250 * 7 6 5 34 34 H 1.08995 * 109.47075 * 30.25842 * 7 6 5 35 35 H 1.08998 * 109.46978 * 150.25905 * 7 6 5 36 36 H 1.08003 * 120.01160 * 179.76327 * 8 6 5 37 37 H 0.96998 * 119.99632 * 145.34052 * 10 9 8 38 38 H 0.97002 * 120.00221 * 359.97438 * 15 13 11 39 39 H 1.09000 * 109.47215 * 299.99920 * 16 15 13 40 40 H 1.09000 * 109.46931 * 60.00383 * 16 15 13 41 41 H 1.09006 * 109.47305 * 60.00726 * 18 17 16 42 42 H 1.09005 * 109.47169 * 180.02562 * 18 17 16 43 43 H 1.09000 * 109.47904 * 300.00116 * 18 17 16 44 44 H 1.09000 * 109.47085 * 59.99807 * 19 17 16 45 45 H 1.08993 * 109.46807 * 179.97438 * 19 17 16 46 46 H 1.09002 * 109.46959 * 300.00088 * 19 17 16 47 47 H 0.97004 * 119.99656 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2934 2.3745 -0.0005 5 6 1.9225 3.6054 -0.0055 6 6 3.3035 3.6810 0.0008 7 6 3.9826 5.0263 0.0012 8 6 4.0620 2.5262 0.0014 9 6 3.4379 1.2864 0.0010 10 7 4.2035 0.1157 0.0010 11 6 5.3761 0.0773 -0.6624 12 8 5.8072 1.0810 -1.1917 13 6 6.1450 -1.2002 -0.7464 14 8 5.7142 -2.2036 -0.2170 15 7 7.3172 -1.2387 -1.4102 16 6 8.0718 -2.4918 -1.4922 17 6 9.3541 -2.2634 -2.2951 18 6 8.9953 -1.7909 -3.7054 19 6 10.2070 -1.1988 -1.6021 20 6 10.1305 -3.5523 -2.3788 21 1 9.7476 -4.4450 -1.9070 22 6 11.3294 -3.5919 -3.0588 23 7 11.7954 -2.5048 -3.6337 24 14 12.2914 -5.1896 -3.1632 25 1 11.8672 -5.9450 -4.3693 26 1 13.7429 -4.8885 -3.2528 27 1 12.0292 -6.0056 -1.9504 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2149 2.3194 -0.0017 32 1 1.3338 4.5109 -0.0104 33 1 4.1471 5.3505 -1.0263 34 1 3.3515 5.7516 0.5146 35 1 4.9404 4.9495 0.5157 36 1 5.1402 2.5881 0.0025 37 1 3.8905 -0.6685 0.4785 38 1 7.6614 -0.4367 -1.8338 39 1 8.3269 -2.8286 -0.4874 40 1 7.4643 -3.2500 -1.9863 41 1 8.4339 -0.8585 -3.6444 42 1 9.9088 -1.6286 -4.2776 43 1 8.3877 -2.5493 -4.1992 44 1 10.4625 -1.5355 -0.5973 45 1 11.1206 -1.0365 -2.1738 46 1 9.6455 -0.2665 -1.5411 47 1 12.6390 -2.5326 -4.1118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411633499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:15 Heat of formation + Delta-G solvation = -84.063040 kcal Electronic energy + Delta-G solvation = -28575.572064 eV Core-core repulsion = 24530.898993 eV Total energy + Delta-G solvation = -4044.673070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.17024 -40.01160 -38.55267 -37.69517 -36.51391 -35.20953 -33.32053 -31.98343 -30.91021 -30.26370 -28.18403 -26.50366 -26.12051 -25.72898 -25.32018 -24.11655 -22.40479 -21.36804 -20.14904 -19.07381 -18.67493 -18.07990 -17.10025 -16.61877 -16.28068 -15.95993 -15.71942 -15.48587 -14.89323 -14.64489 -14.63589 -14.36716 -14.30552 -13.85324 -13.75929 -13.56358 -12.94513 -12.80445 -12.64202 -12.49713 -12.23458 -12.21958 -11.85284 -11.66699 -11.40989 -11.26958 -11.18986 -11.13090 -10.88644 -10.70838 -10.50656 -10.40697 -10.20300 -9.66101 -9.56400 -9.25883 -8.81189 -8.77558 -8.63006 -8.37913 -8.01426 -6.03195 -4.13971 0.91102 1.13957 1.67956 2.46285 2.94183 3.27963 3.32374 3.35140 3.38570 3.56781 3.83548 4.38497 4.50403 4.60370 4.68971 4.77353 4.83170 4.90237 5.06492 5.13046 5.17966 5.23556 5.42030 5.46193 5.62399 5.71622 5.86320 5.97608 6.09736 6.18118 6.22446 6.39892 6.45919 6.56806 6.60294 6.80374 6.84257 6.92332 6.99587 6.99689 7.11630 7.32483 7.54408 7.62804 7.69105 7.90338 7.99557 8.11172 8.28901 8.39040 8.86272 9.51989 10.98251 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.002336 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.700570 B =11981.570669 C =12942.642621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.101 3.899 4 C -0.188 4.188 5 C -0.095 4.095 6 C -0.105 4.105 7 C -0.109 4.109 8 C -0.084 4.084 9 C 0.120 3.880 10 N -0.639 5.639 11 C 0.508 3.492 12 O -0.504 6.504 13 C 0.499 3.501 14 O -0.530 6.530 15 N -0.678 5.678 16 C 0.128 3.872 17 C 0.056 3.944 18 C -0.134 4.134 19 C -0.134 4.134 20 C -0.507 4.507 21 H 0.058 0.942 22 C 0.067 3.933 23 N -0.884 5.884 24 Si 0.894 3.106 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.149 0.851 37 H 0.425 0.575 38 H 0.411 0.589 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.008 0.992 42 H 0.087 0.913 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.087 0.913 46 H 0.008 0.992 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.973 12.504 7.587 25.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.053 3.947 4 C -0.208 4.208 5 C -0.114 4.114 6 C -0.105 4.105 7 C -0.166 4.166 8 C -0.104 4.104 9 C 0.025 3.975 10 N -0.286 5.286 11 C 0.291 3.709 12 O -0.378 6.378 13 C 0.278 3.722 14 O -0.408 6.408 15 N -0.330 5.330 16 C 0.006 3.994 17 C 0.056 3.944 18 C -0.192 4.192 19 C -0.192 4.192 20 C -0.546 4.546 21 H 0.077 0.923 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.722 3.278 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.167 0.833 37 H 0.264 0.736 38 H 0.249 0.751 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.027 0.973 42 H 0.106 0.894 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.106 0.894 46 H 0.027 0.973 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.642 12.292 7.438 25.150 hybrid contribution 0.162 -0.792 -0.109 0.816 sum -20.480 11.500 7.329 24.604 Atomic orbital electron populations 1.23063 0.78088 1.04127 1.01273 1.86070 1.21595 1.26290 1.88965 1.18784 0.90350 0.85143 1.00374 1.21011 0.99826 0.91675 1.08256 1.20823 0.93910 0.96980 0.99663 1.19744 0.93365 0.95396 1.02044 1.20723 1.00429 0.92903 1.02503 1.21122 1.01458 0.89278 0.98556 1.17062 0.86754 0.86926 1.06719 1.42970 1.20148 1.14628 1.50859 1.20660 0.81771 0.89951 0.78529 1.90745 1.67462 1.35255 1.44347 1.19708 0.83111 0.87931 0.81457 1.90747 1.68670 1.35049 1.46364 1.46214 1.19595 1.15951 1.51200 1.21978 0.93569 0.82751 1.01110 1.18382 0.88891 0.95875 0.91298 1.21864 1.01435 0.96216 0.99672 1.21861 1.02407 0.95408 0.99488 1.20949 1.04938 0.94614 1.34097 0.92328 1.24883 0.97211 0.96337 0.95061 1.69807 1.20486 1.26986 1.34991 0.86554 0.79062 0.83654 0.78487 1.20704 1.21254 1.19895 0.92623 0.92615 0.88076 0.85020 0.85649 0.91091 0.91651 0.91395 0.83346 0.73649 0.75128 0.91867 0.91905 0.97266 0.89407 0.95328 0.95306 0.89413 0.97264 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.39 10.05 -19.61 -0.20 -3.58 16 3 C 0.10 1.15 6.70 -39.04 -0.26 0.88 16 4 C -0.19 -1.72 9.04 -39.47 -0.36 -2.08 16 5 C -0.10 -0.84 9.69 -39.56 -0.38 -1.23 16 6 C -0.10 -1.07 5.88 -104.63 -0.62 -1.69 16 7 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 8 C -0.08 -1.06 8.35 -39.40 -0.33 -1.39 16 9 C 0.12 1.57 6.32 -83.55 -0.53 1.04 16 10 N -0.64 -8.87 5.17 -10.19 -0.05 -8.92 16 11 C 0.51 8.11 7.73 -11.64 -0.09 8.02 16 12 O -0.50 -8.61 13.89 5.46 0.08 -8.54 16 13 C 0.50 8.88 7.88 -11.64 -0.09 8.79 16 14 O -0.53 -10.31 16.48 5.49 0.09 -10.22 16 15 N -0.68 -12.58 4.95 -60.77 -0.30 -12.89 16 16 C 0.13 2.66 4.50 -4.04 -0.02 2.65 16 17 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 18 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 19 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 20 C -0.51 -13.14 8.01 -34.44 -0.28 -13.41 16 21 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 22 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 23 N -0.88 -23.56 9.35 55.43 0.52 -23.04 16 24 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 28 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 29 H 0.06 0.30 7.66 -51.93 -0.40 -0.09 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.13 0.85 6.30 -52.49 -0.33 0.52 16 32 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.15 2.02 6.20 -52.48 -0.33 1.69 16 37 H 0.43 5.52 8.04 -40.82 -0.33 5.19 16 38 H 0.41 7.46 5.63 -40.82 -0.23 7.23 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 42 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 46 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 47 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -29.18 382.98 -6.98 -36.15 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.69 Total: 10.08 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.17 Total: -0.38 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.16 Total: -44.85 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.03 Total: -22.34 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.18 -6.98 -36.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411633499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.909 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds