Wall clock time and date at job start Tue Mar 31 2020 18:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35958 * 116.99929 * 2 1 4 4 C 1.38551 * 120.08726 * 359.97438 * 3 2 1 5 5 C 1.38237 * 120.01467 * 180.23821 * 4 3 2 6 6 C 1.38305 * 120.20053 * 359.48339 * 5 4 3 7 7 C 1.50698 * 119.91402 * 180.25904 * 6 5 4 8 8 C 1.38162 * 120.16822 * 0.51598 * 6 5 4 9 9 C 1.38794 * 119.98111 * 359.74473 * 8 6 5 10 10 N 1.39888 * 120.09855 * 179.97438 * 9 8 6 11 11 C 1.34773 * 119.99915 * 325.34208 * 10 9 8 12 12 O 1.21393 * 120.00203 * 4.46269 * 11 10 9 13 13 C 1.49334 * 120.00176 * 184.46925 * 11 10 9 14 14 O 1.21357 * 119.99757 * 359.97438 * 13 11 10 15 15 N 1.34773 * 120.00176 * 179.97438 * 13 11 10 16 16 C 1.46502 * 119.99911 * 179.97438 * 15 13 11 17 17 C 1.53007 * 109.46859 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.46950 * 299.99800 * 17 16 15 19 19 C 1.53002 * 109.47185 * 60.00123 * 17 16 15 20 20 C 1.50704 * 109.46671 * 179.97438 * 17 16 15 21 21 H 1.07993 * 120.00278 * 0.02562 * 20 17 16 22 22 C 1.37882 * 119.99471 * 179.97438 * 20 17 16 23 23 N 1.31510 * 120.00046 * 0.02562 * 22 20 17 24 24 Si 1.86797 * 119.99581 * 180.02562 * 22 20 17 25 25 H 1.48502 * 109.47130 * 90.00613 * 24 22 20 26 26 H 1.48508 * 109.47147 * 210.00591 * 24 22 20 27 27 H 1.48505 * 109.47425 * 330.00470 * 24 22 20 28 28 H 1.08996 * 109.47740 * 300.00662 * 1 2 3 29 29 H 1.09005 * 109.46661 * 60.00613 * 1 2 3 30 30 H 1.09005 * 109.47096 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.98968 * 359.95543 * 4 3 2 32 32 H 1.08005 * 119.89889 * 179.72705 * 5 4 3 33 33 H 1.09002 * 109.47042 * 270.25250 * 7 6 5 34 34 H 1.08995 * 109.47075 * 30.25842 * 7 6 5 35 35 H 1.08998 * 109.46978 * 150.25905 * 7 6 5 36 36 H 1.08003 * 120.01160 * 179.76327 * 8 6 5 37 37 H 0.96998 * 119.99632 * 145.34052 * 10 9 8 38 38 H 0.97002 * 120.00221 * 359.97438 * 15 13 11 39 39 H 1.09000 * 109.47215 * 299.99920 * 16 15 13 40 40 H 1.09000 * 109.46931 * 60.00383 * 16 15 13 41 41 H 1.09006 * 109.47305 * 60.00726 * 18 17 16 42 42 H 1.09005 * 109.47169 * 180.02562 * 18 17 16 43 43 H 1.09000 * 109.47904 * 300.00116 * 18 17 16 44 44 H 1.09000 * 109.47085 * 59.99807 * 19 17 16 45 45 H 1.08993 * 109.46807 * 179.97438 * 19 17 16 46 46 H 1.09002 * 109.46959 * 300.00088 * 19 17 16 47 47 H 0.97004 * 119.99656 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2934 2.3745 -0.0005 5 6 1.9225 3.6054 -0.0055 6 6 3.3035 3.6810 0.0008 7 6 3.9826 5.0263 0.0012 8 6 4.0620 2.5262 0.0014 9 6 3.4379 1.2864 0.0010 10 7 4.2035 0.1157 0.0010 11 6 5.3761 0.0773 -0.6624 12 8 5.8072 1.0810 -1.1917 13 6 6.1450 -1.2002 -0.7464 14 8 5.7142 -2.2036 -0.2170 15 7 7.3172 -1.2387 -1.4102 16 6 8.0718 -2.4918 -1.4922 17 6 9.3541 -2.2634 -2.2951 18 6 8.9953 -1.7909 -3.7054 19 6 10.2070 -1.1988 -1.6021 20 6 10.1305 -3.5523 -2.3788 21 1 9.7476 -4.4450 -1.9070 22 6 11.3294 -3.5919 -3.0588 23 7 11.7954 -2.5048 -3.6337 24 14 12.2914 -5.1896 -3.1632 25 1 11.8672 -5.9450 -4.3693 26 1 13.7429 -4.8885 -3.2528 27 1 12.0292 -6.0056 -1.9504 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2149 2.3194 -0.0017 32 1 1.3338 4.5109 -0.0104 33 1 4.1471 5.3505 -1.0263 34 1 3.3515 5.7516 0.5146 35 1 4.9404 4.9495 0.5157 36 1 5.1402 2.5881 0.0025 37 1 3.8905 -0.6685 0.4785 38 1 7.6614 -0.4367 -1.8338 39 1 8.3269 -2.8286 -0.4874 40 1 7.4643 -3.2500 -1.9863 41 1 8.4339 -0.8585 -3.6444 42 1 9.9088 -1.6286 -4.2776 43 1 8.3877 -2.5493 -4.1992 44 1 10.4625 -1.5355 -0.5973 45 1 11.1206 -1.0365 -2.1738 46 1 9.6455 -0.2665 -1.5411 47 1 12.6390 -2.5326 -4.1118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411633499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:14 Heat of formation + Delta-G solvation = -102.088076 kcal Electronic energy + Delta-G solvation = -28576.353688 eV Core-core repulsion = 24530.898993 eV Total energy + Delta-G solvation = -4045.454694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.26316 -41.08994 -39.82061 -38.52508 -38.23482 -36.34120 -35.00688 -32.78365 -32.69262 -31.17353 -28.77203 -28.01009 -27.59685 -27.25567 -26.81882 -25.45611 -23.41936 -22.24560 -21.44667 -20.73523 -19.94402 -19.03007 -18.23788 -17.89215 -17.47425 -17.33264 -16.78689 -16.68444 -16.61943 -16.11987 -15.58090 -15.39046 -15.27027 -14.95888 -14.78419 -14.70385 -14.52714 -14.32963 -14.06329 -13.37650 -13.26016 -13.21819 -13.12336 -12.87296 -12.73487 -12.70927 -12.59410 -12.48935 -12.28641 -12.14088 -12.07518 -11.86756 -11.51923 -11.43414 -11.30440 -10.78575 -10.66713 -10.41945 -10.17883 -9.62073 -8.85134 -8.01994 -6.18487 -0.09765 0.35181 0.51937 1.21060 1.44346 1.47303 1.55433 2.02399 2.25853 2.44426 2.60186 2.70946 3.22024 3.32514 3.81306 3.92697 4.09646 4.26404 4.32293 4.37935 4.42553 4.43077 4.45563 4.66402 4.67335 4.75863 4.81164 4.88313 4.90293 4.98395 5.02808 5.04335 5.16152 5.16856 5.17905 5.23901 5.32354 5.46481 5.62796 5.63842 5.67216 5.80124 5.84022 6.10427 6.17612 6.28046 6.35309 6.40550 6.64187 6.82908 6.88969 7.49545 8.97390 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.002336 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.700570 B =11981.570669 C =12942.642621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.096 3.904 4 C -0.184 4.184 5 C -0.085 4.085 6 C -0.113 4.113 7 C -0.108 4.108 8 C -0.101 4.101 9 C 0.085 3.915 10 N -0.626 5.626 11 C 0.513 3.487 12 O -0.519 6.519 13 C 0.503 3.497 14 O -0.547 6.547 15 N -0.677 5.677 16 C 0.142 3.858 17 C 0.051 3.949 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.526 4.526 21 H 0.052 0.948 22 C 0.026 3.974 23 N -0.901 5.901 24 Si 0.949 3.051 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.273 1.273 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.130 0.870 37 H 0.427 0.573 38 H 0.414 0.586 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.029 0.971 42 H 0.064 0.936 43 H 0.023 0.977 44 H 0.024 0.976 45 H 0.064 0.936 46 H 0.030 0.970 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.378 13.760 8.056 28.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.049 3.951 4 C -0.203 4.203 5 C -0.104 4.104 6 C -0.114 4.114 7 C -0.165 4.165 8 C -0.121 4.121 9 C -0.009 4.009 10 N -0.273 5.273 11 C 0.295 3.705 12 O -0.395 6.395 13 C 0.283 3.717 14 O -0.426 6.426 15 N -0.329 5.329 16 C 0.020 3.980 17 C 0.051 3.949 18 C -0.183 4.183 19 C -0.182 4.182 20 C -0.565 4.565 21 H 0.070 0.930 22 C -0.173 4.173 23 N -0.540 5.540 24 Si 0.775 3.225 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.198 1.198 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.132 0.868 31 H 0.181 0.819 32 H 0.177 0.823 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.148 0.852 37 H 0.266 0.734 38 H 0.252 0.748 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.043 0.957 45 H 0.083 0.917 46 H 0.049 0.951 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.086 13.561 7.922 27.922 hybrid contribution 0.762 -1.133 -0.217 1.383 sum -22.323 12.428 7.705 26.686 Atomic orbital electron populations 1.23374 0.75891 1.05568 1.02643 1.86045 1.23935 1.26292 1.88879 1.18922 0.89847 0.86259 1.00114 1.21406 1.01313 0.90857 1.06716 1.21251 0.93461 0.98261 0.97399 1.20051 0.94255 0.95479 1.01606 1.20769 1.00548 0.92228 1.02918 1.21108 1.00907 0.90250 0.99869 1.17328 0.87727 0.86467 1.09392 1.42845 1.19351 1.15274 1.49813 1.20176 0.82381 0.88809 0.79123 1.90742 1.68029 1.35259 1.45451 1.19993 0.82686 0.88502 0.80506 1.90732 1.69004 1.35964 1.46892 1.46044 1.19906 1.15213 1.51737 1.21605 0.92725 0.83533 1.00181 1.18376 0.89688 0.95038 0.91837 1.21720 1.00416 0.97068 0.99064 1.21715 1.01561 0.96317 0.98656 1.21241 1.05569 0.95516 1.34154 0.93006 1.25496 0.98046 0.98822 0.94968 1.69924 1.20609 1.28202 1.35247 0.85706 0.77839 0.80624 0.78308 1.20529 1.21055 1.19766 0.90878 0.91469 0.86820 0.81908 0.82256 0.90851 0.89293 0.91930 0.85222 0.73394 0.74765 0.92481 0.92622 0.95188 0.91702 0.95782 0.95670 0.91730 0.95119 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.76 10.05 -93.07 -0.94 -7.70 16 3 C 0.10 2.04 6.70 22.62 0.15 2.19 16 4 C -0.18 -2.80 9.04 22.34 0.20 -2.60 16 5 C -0.09 -1.24 9.69 22.29 0.22 -1.02 16 6 C -0.11 -2.14 5.88 -19.87 -0.12 -2.25 16 7 C -0.11 -1.51 10.01 71.24 0.71 -0.80 16 8 C -0.10 -2.54 8.35 22.38 0.19 -2.36 16 9 C 0.08 2.19 6.32 38.26 0.24 2.44 16 10 N -0.63 -17.58 5.17 -304.48 -1.58 -19.15 16 11 C 0.51 16.57 7.73 87.23 0.67 17.25 16 12 O -0.52 -17.98 13.89 -3.38 -0.05 -18.03 16 13 C 0.50 18.00 7.88 87.23 0.69 18.68 16 14 O -0.55 -21.39 16.48 -3.27 -0.05 -21.44 16 15 N -0.68 -25.13 4.95 -464.52 -2.30 -27.43 16 16 C 0.14 5.97 4.50 86.38 0.39 6.36 16 17 C 0.05 2.39 0.50 -52.93 -0.03 2.36 16 18 C -0.12 -5.73 8.08 71.98 0.58 -5.15 16 19 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 20 C -0.53 -27.50 8.01 25.60 0.21 -27.30 16 21 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 22 C 0.03 1.39 5.15 84.66 0.44 1.82 16 23 N -0.90 -48.49 9.35 21.45 0.20 -48.29 16 24 Si 0.95 42.40 29.54 68.60 2.03 44.43 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 28 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 29 H 0.07 0.53 7.66 -2.38 -0.02 0.51 16 30 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.16 1.39 6.30 -2.91 -0.02 1.37 16 32 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 0.81 8.09 -2.39 -0.02 0.79 16 35 H 0.06 0.93 8.08 -2.39 -0.02 0.91 16 36 H 0.13 3.66 6.20 -2.91 -0.02 3.65 16 37 H 0.43 11.25 8.04 -92.71 -0.75 10.51 16 38 H 0.41 14.90 5.63 -92.71 -0.52 14.37 16 39 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.06 2.40 8.14 -2.39 -0.02 2.39 16 41 H 0.03 1.21 6.86 -2.38 -0.02 1.19 16 42 H 0.06 3.30 6.07 -2.38 -0.01 3.28 16 43 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 46 H 0.03 1.22 6.86 -2.39 -0.02 1.21 16 47 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 Total: -1.00 -63.02 382.98 3.30 -59.72 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: -0.25 Total: 32.05 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 6.24 Total: 5.83 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -3.67 Total: -94.87 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -1.04 Total: -47.17 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -63.02 3.30 -59.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411633499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.366 kcal (2) G-P(sol) polarization free energy of solvation -63.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds