Wall clock time and date at job start Tue Mar 31 2020 18:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38169 * 120.02780 * 2 1 4 4 C 1.38246 * 120.05871 * 180.02562 * 3 2 1 5 5 C 1.38291 * 120.10790 * 0.02680 * 4 3 2 6 6 C 1.38120 * 120.05661 * 359.67650 * 5 4 3 7 7 C 1.38708 * 120.02901 * 180.02562 * 2 1 3 8 8 O 1.35902 * 120.05787 * 359.97438 * 7 2 1 9 9 C 1.42900 * 116.99996 * 180.02562 * 8 7 2 10 10 C 1.52998 * 109.46823 * 179.97438 * 9 8 7 11 11 N 1.46506 * 109.47237 * 64.99704 * 10 9 8 12 12 C 1.34773 * 119.99969 * 179.72043 * 11 10 9 13 13 O 1.21586 * 120.00012 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99940 * 180.02562 * 12 11 10 15 15 C 1.47026 * 125.64818 * 359.69197 * 14 12 11 16 16 C 1.54337 * 107.26814 * 178.85011 * 15 14 12 17 17 C 1.55161 * 103.01905 * 338.14586 * 16 15 14 18 18 O 1.42906 * 110.99902 * 277.23139 * 17 16 15 19 19 C 1.50694 * 111.03748 * 153.39636 * 17 16 15 20 20 H 1.07997 * 120.00515 * 6.32721 * 19 17 16 21 21 C 1.37879 * 119.99779 * 186.33165 * 19 17 16 22 22 N 1.31515 * 120.00364 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 119.99945 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47294 * 59.99390 * 23 21 19 25 25 H 1.48498 * 109.47420 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46970 * 299.99394 * 23 21 19 27 27 C 1.47427 * 125.65172 * 180.02562 * 14 12 11 28 28 H 1.09001 * 109.46735 * 269.97529 * 1 2 3 29 29 H 1.08999 * 109.47169 * 29.97834 * 1 2 3 30 30 H 1.08996 * 109.46797 * 149.97810 * 1 2 3 31 31 H 1.08005 * 119.96882 * 0.02562 * 3 2 1 32 32 H 1.07994 * 119.94646 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.96826 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.03225 * 180.32803 * 6 5 4 35 35 H 1.09000 * 109.47099 * 59.99559 * 9 8 7 36 36 H 1.08995 * 109.46772 * 299.98978 * 9 8 7 37 37 H 1.09001 * 109.47671 * 305.00044 * 10 9 8 38 38 H 1.08998 * 109.47454 * 185.00041 * 10 9 8 39 39 H 0.97005 * 119.99811 * 0.02562 * 11 10 9 40 40 H 1.08997 * 109.88129 * 298.39773 * 15 14 12 41 41 H 1.08998 * 109.88047 * 59.55987 * 15 14 12 42 42 H 1.08991 * 110.85215 * 219.67560 * 16 15 14 43 43 H 1.08997 * 110.51370 * 96.44701 * 16 15 14 44 44 H 0.96706 * 113.99182 * 173.65088 * 18 17 16 45 45 H 0.96997 * 120.00236 * 180.02562 * 22 21 19 46 46 H 1.09004 * 110.36238 * 322.92266 * 27 14 12 47 47 H 1.08994 * 110.37047 * 85.13508 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1970 -0.0005 5 6 4.2752 0.0010 -0.0016 6 6 3.5887 -1.1975 0.0046 7 6 2.2012 -1.2009 -0.0005 8 8 1.5234 -2.3789 -0.0005 9 6 2.3035 -3.5762 -0.0005 10 6 1.3733 -4.7909 0.0001 11 7 0.6124 -4.8240 -1.2514 12 6 -0.2718 -5.8159 -1.4764 13 8 -0.4384 -6.6830 -0.6406 14 7 -0.9714 -5.8466 -2.6279 15 6 -0.8738 -4.8630 -3.7164 16 6 -1.8334 -5.3209 -4.8351 17 6 -2.0043 -6.8366 -4.5504 18 8 -0.9220 -7.5870 -5.1050 19 6 -3.3273 -7.3385 -5.0685 20 1 -3.9618 -6.6866 -5.6506 21 6 -3.7279 -8.6301 -4.7995 22 7 -2.9551 -9.4242 -4.0910 23 14 -5.3682 -9.2522 -5.4412 24 1 -5.3815 -9.1739 -6.9241 25 1 -5.5625 -10.6624 -5.0186 26 1 -6.4645 -8.4148 -4.8914 27 6 -1.9664 -6.8682 -3.0019 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6583 2.1316 0.0004 32 1 4.1195 2.1330 -0.0010 33 1 5.3552 0.0042 -0.0025 34 1 4.1314 -2.1312 0.0091 35 1 2.9325 -3.6000 0.8894 36 1 2.9322 -3.6001 -0.8906 37 1 0.6847 -4.7208 0.8421 38 1 1.9652 -5.7018 0.0897 39 1 0.7483 -4.1344 -1.9200 40 1 -1.1675 -3.8781 -3.3534 41 1 0.1472 -4.8309 -4.0965 42 1 -1.3888 -5.1607 -5.8172 43 1 -2.7892 -4.8033 -4.7541 44 1 -0.9333 -8.5252 -4.8707 45 1 -3.2367 -10.3329 -3.9021 46 1 -1.6517 -7.8508 -2.6502 47 1 -2.9436 -6.6142 -2.5914 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591923594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:58 Heat of formation + Delta-G solvation = -91.413855 kcal Electronic energy + Delta-G solvation = -28685.679257 eV Core-core repulsion = 24640.687432 eV Total energy + Delta-G solvation = -4044.991825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.54607 -39.58688 -37.93666 -37.26391 -34.52129 -34.18705 -33.03639 -32.20399 -30.74693 -30.09555 -29.09190 -27.66790 -26.95378 -25.13771 -23.79336 -22.53306 -21.90411 -21.42769 -19.65715 -19.53328 -18.39839 -17.60250 -17.01464 -16.48520 -16.21361 -15.95690 -15.39149 -15.28058 -14.92273 -14.72378 -14.44902 -14.11384 -13.99646 -13.59333 -13.42049 -13.29789 -13.00283 -12.77935 -12.61851 -12.49017 -12.30681 -12.09064 -11.87986 -11.62869 -11.56986 -11.40271 -11.25654 -11.02760 -10.99895 -10.80126 -10.58184 -10.47295 -10.17398 -9.60924 -9.33714 -9.11768 -8.84258 -8.66766 -8.37817 -8.33476 -7.65799 -6.24804 -4.34651 1.03068 1.16701 2.87667 3.13467 3.24658 3.29859 3.31748 3.47326 3.77606 4.27743 4.43093 4.47357 4.49887 4.66031 4.77776 4.81848 4.92272 5.01515 5.02173 5.09753 5.28250 5.41923 5.44111 5.51880 5.57677 5.60629 5.68339 5.71272 5.81230 6.00145 6.04202 6.05795 6.13795 6.17987 6.25847 6.51632 6.53828 6.72465 6.73650 6.91775 6.99092 7.14735 7.26231 7.35407 7.66719 7.76994 8.06308 8.55769 8.69453 9.15201 9.32572 9.40764 10.82176 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.002274 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.041429 B =12312.692757 C =12741.069385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.116 4.116 3 C -0.085 4.085 4 C -0.157 4.157 5 C -0.087 4.087 6 C -0.207 4.207 7 C 0.130 3.870 8 O -0.306 6.306 9 C 0.048 3.952 10 C 0.145 3.855 11 N -0.749 5.749 12 C 0.717 3.283 13 O -0.598 6.598 14 N -0.627 5.627 15 C 0.106 3.894 16 C -0.116 4.116 17 C 0.248 3.752 18 O -0.583 6.583 19 C -0.538 4.538 20 H 0.066 0.934 21 C 0.071 3.929 22 N -0.892 5.892 23 Si 0.904 3.096 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.275 1.275 27 C 0.114 3.886 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.395 0.605 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.381 0.619 45 H 0.270 0.730 46 H 0.085 0.915 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.688 18.795 7.903 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.116 4.116 3 C -0.103 4.103 4 C -0.176 4.176 5 C -0.106 4.106 6 C -0.225 4.225 7 C 0.085 3.915 8 O -0.220 6.220 9 C -0.028 4.028 10 C 0.020 3.980 11 N -0.407 5.407 12 C 0.419 3.581 13 O -0.477 6.477 14 N -0.364 5.364 15 C -0.018 4.018 16 C -0.154 4.154 17 C 0.208 3.792 18 O -0.391 6.391 19 C -0.576 4.576 20 H 0.084 0.916 21 C -0.132 4.132 22 N -0.530 5.530 23 Si 0.731 3.269 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.008 4.008 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.229 0.771 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.231 0.769 45 H 0.080 0.920 46 H 0.103 0.897 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.552 18.486 8.434 23.883 hybrid contribution -0.568 -0.617 -0.321 0.898 sum 11.983 17.869 8.113 22.994 Atomic orbital electron populations 1.20631 0.90333 1.03028 1.02393 1.19332 0.96708 0.90353 1.05248 1.20907 0.94139 0.96814 0.98439 1.21036 0.94240 0.98068 1.04207 1.20923 0.99750 0.91911 0.97972 1.21269 0.92976 0.99548 1.08745 1.18859 0.90366 0.85770 0.96514 1.86148 1.35502 1.12013 1.88306 1.23166 0.94401 0.82785 1.02425 1.21131 0.94182 0.95073 0.87612 1.45026 1.44853 1.29887 1.20979 1.15486 0.78938 0.81875 0.81826 1.90886 1.70758 1.40246 1.45846 1.47921 1.43014 1.29604 1.15873 1.21923 0.99840 0.91311 0.88719 1.22589 0.98222 0.97740 0.96811 1.19631 0.86039 0.86605 0.86941 1.86103 1.50657 1.25617 1.76759 1.21411 1.03199 0.98074 1.34953 0.91604 1.25083 0.97645 0.96652 0.93860 1.69711 1.37537 1.07875 1.37903 0.86465 0.83289 0.77816 0.79335 1.20033 1.21112 1.20028 1.23132 0.88610 0.90624 0.98435 0.91385 0.91708 0.90836 0.85489 0.86032 0.85939 0.85441 0.90326 0.91205 0.90674 0.89574 0.77061 0.93100 0.92793 0.90810 0.90439 0.76941 0.91956 0.89658 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.79 36.01 0.35 -0.63 16 2 C -0.12 -1.16 5.89 -104.47 -0.62 -1.77 16 3 C -0.08 -0.72 9.70 -39.60 -0.38 -1.10 16 4 C -0.16 -1.24 10.04 -39.56 -0.40 -1.63 16 5 C -0.09 -0.70 10.04 -39.60 -0.40 -1.10 16 6 C -0.21 -1.85 9.04 -39.43 -0.36 -2.21 16 7 C 0.13 1.37 6.66 -39.21 -0.26 1.11 16 8 O -0.31 -3.39 9.13 -19.43 -0.18 -3.57 16 9 C 0.05 0.43 4.87 37.16 0.18 0.62 16 10 C 0.14 1.77 6.06 -4.04 -0.02 1.75 16 11 N -0.75 -11.42 5.46 -65.22 -0.36 -11.78 16 12 C 0.72 14.76 8.49 -86.92 -0.74 14.02 16 13 O -0.60 -14.59 16.60 5.29 0.09 -14.50 16 14 N -0.63 -13.20 3.33 -176.22 -0.59 -13.78 16 15 C 0.11 1.87 6.15 -3.05 -0.02 1.85 16 16 C -0.12 -2.30 6.13 -24.89 -0.15 -2.45 16 17 C 0.25 6.02 0.87 -89.62 -0.08 5.94 16 18 O -0.58 -14.86 13.16 -35.23 -0.46 -15.32 16 19 C -0.54 -14.01 8.27 -34.44 -0.28 -14.29 16 20 H 0.07 1.67 7.79 -52.49 -0.41 1.26 16 21 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 22 N -0.89 -23.94 10.69 55.43 0.59 -23.35 16 23 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C 0.11 2.78 5.38 -2.52 -0.01 2.77 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.07 0.77 7.53 -51.93 -0.39 0.38 16 31 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 32 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 35 H 0.08 0.55 7.65 -51.93 -0.40 0.16 16 36 H 0.07 0.56 7.67 -51.93 -0.40 0.17 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.40 5.32 7.46 -40.82 -0.30 5.02 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 44 H 0.38 9.98 7.56 45.56 0.34 10.33 16 45 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.09 2.35 7.33 -51.93 -0.38 1.97 16 47 H 0.06 1.44 8.03 -51.93 -0.42 1.03 16 LS Contribution 386.68 15.07 5.83 5.83 Total: -1.00 -31.44 386.68 -9.84 -41.28 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -6.46 Total: 15.17 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -3.28 Total: 4.63 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.35 Total: -48.91 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.55 Total: -33.39 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.44 -9.84 -41.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591923594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.137 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds