Wall clock time and date at job start Tue Mar 31 2020 18:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38756 * 120.05318 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94144 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.96880 * 179.97438 * 5 4 3 7 7 C 1.38280 * 120.05782 * 0.02562 * 5 4 3 8 8 C 1.38240 * 120.11179 * 0.02562 * 7 5 4 9 9 C 1.38170 * 120.05684 * 359.67992 * 8 7 5 10 10 C 1.50697 * 120.03087 * 180.29991 * 9 8 7 11 11 N 1.46496 * 109.47255 * 260.31679 * 10 9 8 12 12 C 1.34774 * 120.00611 * 179.97438 * 11 10 9 13 13 O 1.21591 * 119.99906 * 0.02562 * 12 11 10 14 14 N 1.34772 * 120.00462 * 179.97438 * 12 11 10 15 15 C 1.47021 * 125.64715 * 0.03384 * 14 12 11 16 16 C 1.54325 * 107.26958 * 181.01868 * 15 14 12 17 17 C 1.55149 * 102.94492 * 22.19247 * 16 15 14 18 18 O 1.42895 * 111.00415 * 82.57038 * 17 16 15 19 19 C 1.50697 * 111.00633 * 206.38831 * 17 16 15 20 20 H 1.08004 * 120.00041 * 359.97438 * 19 17 16 21 21 C 1.37879 * 120.00411 * 179.97438 * 19 17 16 22 22 N 1.31516 * 119.99569 * 359.97438 * 21 19 17 23 23 Si 1.86794 * 120.00264 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47106 * 60.00364 * 23 21 19 25 25 H 1.48508 * 109.47320 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47229 * 300.00107 * 23 21 19 27 27 C 1.47429 * 125.64873 * 179.71776 * 14 12 11 28 28 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 30 30 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 31 31 H 1.08002 * 120.02695 * 0.02562 * 4 3 2 32 32 H 1.09000 * 109.46883 * 90.00077 * 6 5 4 33 33 H 1.09000 * 109.47153 * 209.99760 * 6 5 4 34 34 H 1.09003 * 109.47559 * 329.99930 * 6 5 4 35 35 H 1.08005 * 119.94590 * 179.97438 * 7 5 4 36 36 H 1.08004 * 119.97290 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.47137 * 20.31924 * 10 9 8 38 38 H 1.08998 * 109.47322 * 140.32060 * 10 9 8 39 39 H 0.97008 * 119.99939 * 0.02562 * 11 10 9 40 40 H 1.08998 * 109.88509 * 300.43450 * 15 14 12 41 41 H 1.09006 * 109.88297 * 61.60518 * 15 14 12 42 42 H 1.09004 * 110.72105 * 140.56160 * 16 15 14 43 43 H 1.09006 * 110.71802 * 263.64972 * 16 15 14 44 44 H 0.96707 * 114.00186 * 180.02562 * 18 17 16 45 45 H 0.97001 * 119.99984 * 179.97438 * 22 21 19 46 46 H 1.08995 * 110.36767 * 274.74872 * 27 14 12 47 47 H 1.08998 * 110.36392 * 37.08141 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0000 6 6 1.1021 4.8698 0.0000 7 6 3.3020 3.6757 -0.0016 8 6 4.0560 2.5170 -0.0032 9 6 3.4312 1.2847 0.0035 10 6 4.2537 0.0220 0.0085 11 7 4.3240 -0.5205 -1.3504 12 6 5.0126 -1.6542 -1.5888 13 8 5.5753 -2.2271 -0.6757 14 7 5.0768 -2.1536 -2.8389 15 6 4.4461 -1.5657 -4.0298 16 6 4.7676 -2.4910 -5.2224 17 6 5.0844 -3.8457 -4.5357 18 8 3.8842 -4.5607 -4.2355 19 6 6.0081 -4.6793 -5.3859 20 1 6.3543 -4.3021 -6.3369 21 6 6.4112 -5.9237 -4.9499 22 7 5.9900 -6.3829 -3.7917 23 14 7.5556 -6.9573 -6.0041 24 1 8.8283 -6.2230 -6.2196 25 1 7.8359 -8.2433 -5.3163 26 1 6.9120 -7.2276 -7.3149 27 6 5.7965 -3.3762 -3.2399 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 0.2129 2.3203 0.0014 32 1 0.9051 5.1750 1.0277 33 1 1.6516 5.6583 -0.5142 34 1 0.1573 4.6911 -0.5134 35 1 3.7924 4.6380 -0.0024 36 1 5.1345 2.5751 -0.0049 37 1 5.2599 0.2453 0.3631 38 1 3.7902 -0.7109 0.6688 39 1 3.8754 -0.0633 -2.0790 40 1 3.3672 -1.5066 -3.8869 41 1 4.8531 -0.5711 -4.2121 42 1 3.9043 -2.5851 -5.8812 43 1 5.6332 -2.1231 -5.7735 44 1 4.0319 -5.4140 -3.8049 45 1 6.2733 -7.2585 -3.4851 46 1 6.8441 -3.1513 -3.4402 47 1 5.7125 -4.1374 -2.4643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591986846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:09 Heat of formation + Delta-G solvation = -90.693158 kcal Electronic energy + Delta-G solvation = -29071.879930 eV Core-core repulsion = 25026.919357 eV Total energy + Delta-G solvation = -4044.960574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.59729 -39.41511 -37.84351 -37.27908 -34.90829 -34.15440 -32.50068 -32.09255 -30.37529 -30.05074 -28.54328 -27.78990 -27.40724 -25.23538 -24.08600 -22.47769 -22.37807 -21.18266 -19.57338 -19.38010 -17.89427 -17.44517 -17.01666 -16.59901 -16.04632 -15.77152 -15.31025 -15.14037 -14.92415 -14.53264 -14.33701 -14.15401 -14.01271 -13.81229 -13.60468 -12.99833 -12.90097 -12.77198 -12.69818 -12.38021 -12.26824 -12.08375 -11.93063 -11.59040 -11.55945 -11.34615 -11.16485 -11.00036 -10.97493 -10.74173 -10.52474 -10.45998 -10.12567 -9.57338 -9.34147 -9.00885 -8.67708 -8.62411 -8.35107 -8.28532 -7.56903 -6.23867 -4.33475 0.97919 1.20949 3.09523 3.19245 3.25675 3.30735 3.32531 3.63302 3.89190 4.29435 4.39200 4.53946 4.67466 4.71110 4.82185 4.91778 4.94632 5.00877 5.03146 5.23777 5.30106 5.32871 5.39575 5.45782 5.49585 5.60458 5.72998 5.73984 5.86524 5.98850 6.05127 6.11227 6.20311 6.26378 6.34383 6.56290 6.58146 6.77444 6.90225 6.94905 7.06653 7.19160 7.31009 7.39557 7.76037 7.80007 8.06599 8.64445 8.72234 9.26827 9.36130 9.52704 10.83298 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023081 B = 0.002494 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.830983 B =11223.489143 C =11375.287575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.304 6.304 3 C 0.150 3.850 4 C -0.214 4.214 5 C -0.044 4.044 6 C -0.116 4.116 7 C -0.162 4.162 8 C -0.058 4.058 9 C -0.142 4.142 10 C 0.193 3.807 11 N -0.743 5.743 12 C 0.717 3.283 13 O -0.599 6.599 14 N -0.628 5.628 15 C 0.107 3.893 16 C -0.116 4.116 17 C 0.250 3.750 18 O -0.584 6.584 19 C -0.538 4.538 20 H 0.066 0.934 21 C 0.070 3.930 22 N -0.894 5.894 23 Si 0.905 3.095 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C 0.112 3.888 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.392 0.608 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.386 0.614 45 H 0.271 0.729 46 H 0.056 0.944 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 20.523 6.813 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.217 6.217 3 C 0.104 3.896 4 C -0.233 4.233 5 C -0.044 4.044 6 C -0.173 4.173 7 C -0.181 4.181 8 C -0.076 4.076 9 C -0.143 4.143 10 C 0.069 3.931 11 N -0.400 5.400 12 C 0.419 3.581 13 O -0.479 6.479 14 N -0.364 5.364 15 C -0.016 4.016 16 C -0.154 4.154 17 C 0.209 3.791 18 O -0.394 6.394 19 C -0.576 4.576 20 H 0.084 0.916 21 C -0.133 4.133 22 N -0.533 5.533 23 Si 0.732 3.268 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.010 4.010 28 H 0.120 0.880 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.142 0.858 36 H 0.150 0.850 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.225 0.775 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.238 0.762 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.281 20.259 7.431 23.903 hybrid contribution 0.356 -0.649 -0.556 0.926 sum -9.925 19.610 6.875 23.029 Atomic orbital electron populations 1.23089 0.78377 1.04281 1.01054 1.86214 1.21281 1.26255 1.87909 1.18905 0.91730 0.84428 0.94558 1.21089 0.99922 0.91721 1.10539 1.19726 0.94022 0.94481 0.96166 1.20825 0.99392 0.94589 1.02464 1.20918 0.93095 0.98433 1.05607 1.20965 1.00124 0.90760 0.95773 1.19330 0.90631 0.95777 1.08598 1.19704 0.98271 0.91018 0.84109 1.45094 1.57730 1.27199 1.09951 1.15503 0.79800 0.80383 0.82376 1.90874 1.52131 1.61862 1.42986 1.47864 1.54809 1.28841 1.04912 1.21894 0.96736 0.96236 0.86782 1.22593 1.01503 0.95655 0.95665 1.19617 0.83014 0.87612 0.88883 1.86057 1.32813 1.37566 1.82969 1.21461 1.29054 1.01682 1.05414 0.91571 1.25087 0.95675 0.97626 0.94879 1.69569 1.44944 1.19596 1.19197 0.86448 0.80869 0.79231 0.80249 1.20025 1.21090 1.20040 1.23171 0.94658 0.83456 0.99702 0.88000 0.92638 0.92778 0.85416 0.90940 0.91236 0.91529 0.85807 0.85010 0.91260 0.90861 0.77471 0.92778 0.93332 0.90886 0.90553 0.76217 0.91836 0.92572 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -3.82 9.73 -19.43 -0.19 -4.01 16 3 C 0.15 1.77 6.66 -39.22 -0.26 1.51 16 4 C -0.21 -2.06 8.69 -39.43 -0.34 -2.40 16 5 C -0.04 -0.38 5.88 -104.65 -0.62 -0.99 16 6 C -0.12 -0.68 10.01 36.01 0.36 -0.32 16 7 C -0.16 -1.44 9.70 -39.57 -0.38 -1.82 16 8 C -0.06 -0.59 9.67 -39.61 -0.38 -0.97 16 9 C -0.14 -1.73 5.26 -104.48 -0.55 -2.28 16 10 C 0.19 2.86 5.46 -5.20 -0.03 2.84 16 11 N -0.74 -12.50 5.51 -66.42 -0.37 -12.87 16 12 C 0.72 15.56 8.49 -86.92 -0.74 14.82 16 13 O -0.60 -15.26 16.60 5.29 0.09 -15.18 16 14 N -0.63 -13.69 3.32 -176.09 -0.59 -14.28 16 15 C 0.11 1.97 6.15 -3.06 -0.02 1.95 16 16 C -0.12 -2.36 6.12 -24.90 -0.15 -2.51 16 17 C 0.25 6.19 0.89 -89.51 -0.08 6.11 16 18 O -0.58 -15.38 13.19 -35.23 -0.46 -15.85 16 19 C -0.54 -14.15 8.25 -34.44 -0.28 -14.43 16 20 H 0.07 1.69 7.77 -52.48 -0.41 1.28 16 21 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 22 N -0.89 -24.27 10.72 55.43 0.59 -23.68 16 23 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.11 2.81 5.64 -2.41 -0.01 2.79 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 31 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 34 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.13 1.15 8.04 -52.48 -0.42 0.73 16 37 H 0.07 1.01 8.01 -51.93 -0.42 0.59 16 38 H 0.07 1.21 7.85 -51.93 -0.41 0.80 16 39 H 0.39 5.90 7.45 -40.82 -0.30 5.59 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.08 1.45 8.02 -51.93 -0.42 1.03 16 44 H 0.39 10.54 6.94 45.56 0.32 10.85 16 45 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.06 1.43 8.04 -51.93 -0.42 1.01 16 47 H 0.08 2.27 7.64 -51.93 -0.40 1.87 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -32.14 386.52 -9.22 -41.36 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -6.51 Total: 15.88 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -2.59 Total: 7.27 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.36 Total: -50.83 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.57 Total: -35.04 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.14 -9.22 -41.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591986846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.332 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds