Wall clock time and date at job start Tue Mar 31 2020 18:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38756 * 120.05318 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94144 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.96880 * 179.97438 * 5 4 3 7 7 C 1.38280 * 120.05782 * 0.02562 * 5 4 3 8 8 C 1.38240 * 120.11179 * 0.02562 * 7 5 4 9 9 C 1.38170 * 120.05684 * 359.67992 * 8 7 5 10 10 C 1.50697 * 120.03087 * 180.29991 * 9 8 7 11 11 N 1.46496 * 109.47255 * 260.31679 * 10 9 8 12 12 C 1.34774 * 120.00611 * 179.97438 * 11 10 9 13 13 O 1.21591 * 119.99906 * 0.02562 * 12 11 10 14 14 N 1.34772 * 120.00462 * 179.97438 * 12 11 10 15 15 C 1.47021 * 125.64715 * 0.03384 * 14 12 11 16 16 C 1.54325 * 107.26958 * 181.01868 * 15 14 12 17 17 C 1.55149 * 102.94492 * 22.19247 * 16 15 14 18 18 O 1.42895 * 111.00415 * 82.57038 * 17 16 15 19 19 C 1.50697 * 111.00633 * 206.38831 * 17 16 15 20 20 H 1.08004 * 120.00041 * 359.97438 * 19 17 16 21 21 C 1.37879 * 120.00411 * 179.97438 * 19 17 16 22 22 N 1.31516 * 119.99569 * 359.97438 * 21 19 17 23 23 Si 1.86794 * 120.00264 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47106 * 60.00364 * 23 21 19 25 25 H 1.48508 * 109.47320 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47229 * 300.00107 * 23 21 19 27 27 C 1.47429 * 125.64873 * 179.71776 * 14 12 11 28 28 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 30 30 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 31 31 H 1.08002 * 120.02695 * 0.02562 * 4 3 2 32 32 H 1.09000 * 109.46883 * 90.00077 * 6 5 4 33 33 H 1.09000 * 109.47153 * 209.99760 * 6 5 4 34 34 H 1.09003 * 109.47559 * 329.99930 * 6 5 4 35 35 H 1.08005 * 119.94590 * 179.97438 * 7 5 4 36 36 H 1.08004 * 119.97290 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.47137 * 20.31924 * 10 9 8 38 38 H 1.08998 * 109.47322 * 140.32060 * 10 9 8 39 39 H 0.97008 * 119.99939 * 0.02562 * 11 10 9 40 40 H 1.08998 * 109.88509 * 300.43450 * 15 14 12 41 41 H 1.09006 * 109.88297 * 61.60518 * 15 14 12 42 42 H 1.09004 * 110.72105 * 140.56160 * 16 15 14 43 43 H 1.09006 * 110.71802 * 263.64972 * 16 15 14 44 44 H 0.96707 * 114.00186 * 180.02562 * 18 17 16 45 45 H 0.97001 * 119.99984 * 179.97438 * 22 21 19 46 46 H 1.08995 * 110.36767 * 274.74872 * 27 14 12 47 47 H 1.08998 * 110.36392 * 37.08141 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0000 6 6 1.1021 4.8698 0.0000 7 6 3.3020 3.6757 -0.0016 8 6 4.0560 2.5170 -0.0032 9 6 3.4312 1.2847 0.0035 10 6 4.2537 0.0220 0.0085 11 7 4.3240 -0.5205 -1.3504 12 6 5.0126 -1.6542 -1.5888 13 8 5.5753 -2.2271 -0.6757 14 7 5.0768 -2.1536 -2.8389 15 6 4.4461 -1.5657 -4.0298 16 6 4.7676 -2.4910 -5.2224 17 6 5.0844 -3.8457 -4.5357 18 8 3.8842 -4.5607 -4.2355 19 6 6.0081 -4.6793 -5.3859 20 1 6.3543 -4.3021 -6.3369 21 6 6.4112 -5.9237 -4.9499 22 7 5.9900 -6.3829 -3.7917 23 14 7.5556 -6.9573 -6.0041 24 1 8.8283 -6.2230 -6.2196 25 1 7.8359 -8.2433 -5.3163 26 1 6.9120 -7.2276 -7.3149 27 6 5.7965 -3.3762 -3.2399 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 0.2129 2.3203 0.0014 32 1 0.9051 5.1750 1.0277 33 1 1.6516 5.6583 -0.5142 34 1 0.1573 4.6911 -0.5134 35 1 3.7924 4.6380 -0.0024 36 1 5.1345 2.5751 -0.0049 37 1 5.2599 0.2453 0.3631 38 1 3.7902 -0.7109 0.6688 39 1 3.8754 -0.0633 -2.0790 40 1 3.3672 -1.5066 -3.8869 41 1 4.8531 -0.5711 -4.2121 42 1 3.9043 -2.5851 -5.8812 43 1 5.6332 -2.1231 -5.7735 44 1 4.0319 -5.4140 -3.8049 45 1 6.2733 -7.2585 -3.4851 46 1 6.8441 -3.1513 -3.4402 47 1 5.7125 -4.1374 -2.4643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591986846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:08 Heat of formation + Delta-G solvation = -113.321988 kcal Electronic energy + Delta-G solvation = -29072.861190 eV Core-core repulsion = 25026.919357 eV Total energy + Delta-G solvation = -4045.941833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.53013 -40.98735 -39.11204 -38.56952 -36.18286 -36.05815 -34.14241 -33.54762 -31.74386 -31.08787 -29.73551 -29.18791 -28.32824 -26.90722 -25.29498 -23.98913 -23.21013 -22.00686 -21.44200 -20.99490 -19.38517 -18.95009 -18.38862 -17.51289 -17.29928 -16.93690 -16.76322 -16.62948 -16.46674 -16.10125 -15.33340 -15.27947 -15.18537 -14.81632 -14.75174 -14.61897 -14.43451 -13.97603 -13.81243 -13.57020 -13.47047 -13.26773 -13.05245 -13.00140 -12.80845 -12.73450 -12.51963 -12.31606 -12.27541 -12.22903 -12.09766 -11.85912 -11.75315 -11.36595 -11.21679 -10.63295 -10.35122 -10.18163 -9.76070 -9.31368 -9.12794 -8.24106 -6.41537 0.19745 0.46471 1.44666 1.45131 1.53720 1.75564 2.16893 2.37382 2.39301 2.71964 3.01674 3.20775 3.61171 3.80986 3.82044 3.97006 4.12179 4.16647 4.19462 4.25963 4.32904 4.34388 4.36645 4.53019 4.60060 4.63476 4.70343 4.75694 4.76886 4.82201 4.86465 4.93032 5.05250 5.09535 5.24428 5.30020 5.33526 5.39387 5.45181 5.45547 5.51084 5.63618 5.77625 5.86891 6.03215 6.17821 6.44150 6.65639 7.06970 7.31017 7.40023 7.57655 8.81449 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023081 B = 0.002494 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.830983 B =11223.489143 C =11375.287575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.135 3.865 4 C -0.216 4.216 5 C -0.041 4.041 6 C -0.115 4.115 7 C -0.162 4.162 8 C -0.059 4.059 9 C -0.163 4.163 10 C 0.197 3.803 11 N -0.721 5.721 12 C 0.711 3.289 13 O -0.646 6.646 14 N -0.633 5.633 15 C 0.109 3.891 16 C -0.109 4.109 17 C 0.233 3.767 18 O -0.590 6.590 19 C -0.555 4.555 20 H 0.072 0.928 21 C 0.023 3.977 22 N -0.919 5.919 23 Si 0.968 3.032 24 H -0.269 1.269 25 H -0.287 1.287 26 H -0.268 1.268 27 C 0.125 3.875 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.404 0.596 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.377 0.623 45 H 0.270 0.730 46 H 0.044 0.956 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.469 23.630 5.602 26.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.089 3.911 4 C -0.235 4.235 5 C -0.041 4.041 6 C -0.172 4.172 7 C -0.180 4.180 8 C -0.078 4.078 9 C -0.164 4.164 10 C 0.074 3.926 11 N -0.377 5.377 12 C 0.413 3.587 13 O -0.529 6.529 14 N -0.369 5.369 15 C -0.013 4.013 16 C -0.147 4.147 17 C 0.192 3.808 18 O -0.399 6.399 19 C -0.593 4.593 20 H 0.090 0.910 21 C -0.177 4.177 22 N -0.559 5.559 23 Si 0.793 3.207 24 H -0.194 1.194 25 H -0.212 1.212 26 H -0.193 1.193 27 C 0.001 3.999 28 H 0.122 0.878 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.167 0.833 36 H 0.160 0.840 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.239 0.761 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.227 0.773 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.275 23.436 6.193 26.734 hybrid contribution 0.583 -1.538 -0.127 1.650 sum -10.692 21.897 6.066 25.112 Atomic orbital electron populations 1.23301 0.76626 1.05001 1.02500 1.86165 1.23346 1.27266 1.88221 1.19095 0.91776 0.84957 0.95233 1.21324 1.00852 0.91265 1.10049 1.20148 0.94389 0.95312 0.94268 1.20898 0.99465 0.93325 1.03481 1.21234 0.93338 0.98899 1.04575 1.21127 1.00872 0.90454 0.95305 1.19160 0.90756 0.94974 1.11503 1.19680 0.98650 0.91877 0.82392 1.44972 1.56031 1.25378 1.11289 1.15742 0.79985 0.81248 0.81772 1.90832 1.54171 1.63482 1.44420 1.47824 1.54831 1.28146 1.06099 1.22076 0.97481 0.97299 0.84451 1.22598 1.02715 0.93075 0.96328 1.19884 0.82566 0.89369 0.88953 1.86047 1.33841 1.37190 1.82859 1.21807 1.29451 1.02252 1.05825 0.90953 1.25887 0.97078 0.98887 0.95897 1.69698 1.45898 1.19753 1.20556 0.85457 0.79063 0.77475 0.78727 1.19438 1.21211 1.19264 1.22762 0.94535 0.83868 0.98696 0.87790 0.91306 0.91116 0.83554 0.89818 0.90006 0.90631 0.83337 0.84011 0.91330 0.93303 0.76067 0.91568 0.89373 0.89691 0.89012 0.77279 0.92026 0.93808 0.94523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.34 -8.44 9.73 -92.43 -0.90 -9.34 16 3 C 0.14 3.08 6.66 22.51 0.15 3.23 16 4 C -0.22 -3.66 8.69 22.37 0.19 -3.47 16 5 C -0.04 -0.58 5.88 -19.88 -0.12 -0.70 16 6 C -0.12 -0.91 10.01 71.24 0.71 -0.20 16 7 C -0.16 -2.40 9.70 22.28 0.22 -2.19 16 8 C -0.06 -1.10 9.67 22.25 0.22 -0.89 16 9 C -0.16 -3.87 5.26 -19.77 -0.10 -3.97 16 10 C 0.20 6.02 5.46 85.63 0.47 6.48 16 11 N -0.72 -24.29 5.51 -482.32 -2.66 -26.95 16 12 C 0.71 31.54 8.49 179.06 1.52 33.06 16 13 O -0.65 -34.51 16.60 -4.00 -0.07 -34.58 16 14 N -0.63 -27.81 3.32 -829.30 -2.76 -30.57 16 15 C 0.11 3.79 6.15 86.73 0.53 4.32 16 16 C -0.11 -4.25 6.12 31.78 0.19 -4.06 16 17 C 0.23 11.64 0.89 -10.07 -0.01 11.63 16 18 O -0.59 -31.75 13.19 -148.98 -1.97 -33.71 16 19 C -0.56 -29.30 8.25 25.60 0.21 -29.09 16 20 H 0.07 3.64 7.77 -2.91 -0.02 3.61 16 21 C 0.02 1.22 5.29 84.65 0.45 1.67 16 22 N -0.92 -51.54 10.72 21.45 0.23 -51.31 16 23 Si 0.97 42.33 29.54 68.60 2.03 44.35 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 27 C 0.13 6.47 5.64 86.93 0.49 6.96 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 30 H 0.07 0.84 7.66 -2.38 -0.02 0.83 16 31 H 0.15 1.82 6.30 -2.91 -0.02 1.80 16 32 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 34 H 0.07 0.49 8.08 -2.39 -0.02 0.47 16 35 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.14 2.25 8.04 -2.91 -0.02 2.23 16 37 H 0.07 2.06 8.01 -2.39 -0.02 2.05 16 38 H 0.05 1.72 7.85 -2.39 -0.02 1.70 16 39 H 0.40 11.67 7.45 -92.70 -0.69 10.98 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 42 H 0.08 3.09 8.14 -2.38 -0.02 3.07 16 43 H 0.09 3.26 8.02 -2.38 -0.02 3.24 16 44 H 0.38 21.45 6.94 -74.05 -0.51 20.93 16 45 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.04 2.31 8.04 -2.39 -0.02 2.29 16 47 H 0.04 2.18 7.64 -2.39 -0.02 2.16 16 Total: -1.00 -72.52 386.52 -0.06 -72.58 By element: Atomic # 1 Polarization: 45.50 SS G_CDS: -0.21 Total: 45.29 kcal Atomic # 6 Polarization: 17.99 SS G_CDS: 6.24 Total: 24.23 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -5.18 Total: -108.83 kcal Atomic # 8 Polarization: -74.70 SS G_CDS: -2.93 Total: -77.63 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -72.52 -0.06 -72.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591986846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.739 kcal (2) G-P(sol) polarization free energy of solvation -72.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds