Wall clock time and date at job start Tue Mar 31 2020 18:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42912 * 1 3 3 C 1.35969 * 116.99924 * 2 1 4 4 C 1.38552 * 120.08141 * 359.71685 * 3 2 1 5 5 C 1.38253 * 120.01109 * 179.74838 * 4 3 2 6 6 C 1.38276 * 120.17799 * 0.55661 * 5 4 3 7 7 C 1.50704 * 119.91289 * 179.72142 * 6 5 4 8 8 C 1.38190 * 120.16558 * 359.69659 * 6 5 4 9 9 C 1.38726 * 119.98655 * 0.02971 * 8 6 5 10 10 N 1.40116 * 120.09112 * 180.02562 * 9 8 6 11 11 C 1.34781 * 119.99936 * 325.35946 * 10 9 8 12 12 O 1.21292 * 119.99797 * 4.45623 * 11 10 9 13 13 C 1.50695 * 119.99955 * 184.45341 * 11 10 9 14 14 N 1.46904 * 109.47205 * 179.97438 * 13 11 10 15 15 C 1.47448 * 110.99694 * 69.87453 * 14 13 11 16 16 C 1.54320 * 107.23441 * 123.25812 * 15 14 13 17 17 C 1.55145 * 103.01447 * 22.28166 * 16 15 14 18 18 O 1.42901 * 110.98950 * 82.48152 * 17 16 15 19 19 C 1.50701 * 110.98830 * 206.25148 * 17 16 15 20 20 H 1.08009 * 119.99533 * 118.55149 * 19 17 16 21 21 C 1.37878 * 120.00545 * 298.54859 * 19 17 16 22 22 N 1.31516 * 119.99540 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 120.00188 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46957 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46727 * 120.00515 * 23 21 19 26 26 H 1.48499 * 109.47086 * 240.00360 * 23 21 19 27 27 C 1.47840 * 111.00188 * 190.71348 * 14 13 11 28 28 H 1.09002 * 109.46700 * 60.00486 * 1 2 3 29 29 H 1.08992 * 109.46900 * 300.00388 * 1 2 3 30 30 H 1.09001 * 109.46706 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.99751 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.90427 * 180.25702 * 5 4 3 33 33 H 1.08997 * 109.47095 * 269.97364 * 7 6 5 34 34 H 1.08994 * 109.47258 * 29.98106 * 7 6 5 35 35 H 1.08999 * 109.46529 * 149.97658 * 7 6 5 36 36 H 1.08004 * 120.00525 * 180.02562 * 8 6 5 37 37 H 0.96999 * 120.00237 * 145.36596 * 10 9 8 38 38 H 1.08999 * 109.47571 * 300.00075 * 13 11 10 39 39 H 1.09003 * 109.47374 * 60.00390 * 13 11 10 40 40 H 1.09001 * 109.88723 * 242.66483 * 15 14 13 41 41 H 1.09003 * 109.89000 * 3.85633 * 15 14 13 42 42 H 1.08994 * 110.70725 * 140.66401 * 16 15 14 43 43 H 1.09006 * 110.70624 * 263.90726 * 16 15 14 44 44 H 0.96697 * 114.00400 * 61.44484 * 18 17 16 45 45 H 0.96998 * 119.99709 * 179.97438 * 22 21 19 46 46 H 1.08997 * 110.37709 * 332.47325 * 27 14 13 47 47 H 1.09005 * 110.36859 * 94.80711 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2934 2.3746 -0.0059 5 6 1.9225 3.6056 -0.0007 6 6 3.3033 3.6807 -0.0011 7 6 3.9828 5.0258 -0.0017 8 6 4.0615 2.5253 -0.0005 9 6 3.4373 1.2864 0.0000 10 7 4.2040 0.1136 0.0012 11 6 5.3769 0.0745 -0.6617 12 8 5.8080 1.0770 -1.1911 13 6 6.1527 -1.2147 -0.7449 14 7 7.3846 -0.9960 -1.5148 15 6 8.3354 -0.1563 -0.7631 16 6 9.6504 -0.9542 -0.6381 17 6 9.5594 -1.9639 -1.8125 18 8 9.9772 -1.3614 -3.0391 19 6 10.3648 -3.2040 -1.5218 20 1 9.8750 -4.1649 -1.4647 21 6 11.7269 -3.1120 -1.3289 22 7 12.3232 -1.9418 -1.3981 23 14 12.7251 -4.6491 -0.9679 24 1 11.8245 -5.8296 -0.9428 25 1 13.7515 -4.8324 -2.0253 26 1 13.3929 -4.5073 0.3509 27 6 8.0432 -2.2799 -1.8367 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2148 2.3195 -0.0101 32 1 1.3339 4.5111 -0.0011 33 1 4.1468 5.3496 -1.0295 34 1 3.3524 5.7516 0.5118 35 1 4.9410 4.9489 0.5123 36 1 5.1398 2.5869 -0.0004 37 1 3.8905 -0.6703 0.4789 38 1 6.4069 -1.5514 0.2601 39 1 5.5455 -1.9729 -1.2394 40 1 8.5157 0.7735 -1.3026 41 1 7.9366 0.0589 0.2283 42 1 10.5123 -0.2982 -0.7598 43 1 9.6945 -1.4773 0.3172 44 1 10.8956 -1.0587 -3.0359 45 1 13.2814 -1.8770 -1.2621 46 1 7.7999 -3.0303 -1.0846 47 1 7.7427 -2.6227 -2.8269 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:15 Heat of formation + Delta-G solvation = -81.903561 kcal Electronic energy + Delta-G solvation = -28901.759453 eV Core-core repulsion = 24857.180025 eV Total energy + Delta-G solvation = -4044.579428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.87690 -39.49603 -38.11856 -37.55299 -34.92714 -34.45390 -32.10992 -31.89883 -30.84035 -29.57363 -28.13598 -28.07715 -26.47527 -26.01363 -24.21709 -22.87590 -21.43843 -20.60407 -19.82304 -19.55330 -18.44615 -17.28793 -16.92939 -16.78719 -16.21804 -15.83412 -15.51837 -14.99328 -14.86176 -14.51874 -14.39124 -14.18641 -14.00062 -13.79562 -13.73675 -13.63647 -12.68621 -12.51520 -12.43556 -12.29176 -12.18205 -12.11939 -11.74834 -11.65681 -11.42002 -11.24199 -11.20772 -11.08790 -11.04327 -10.74231 -10.39199 -10.30948 -10.25459 -9.83198 -9.53141 -9.17493 -8.62874 -8.58754 -8.03825 -7.88494 -7.58898 -6.19408 -4.27916 1.14848 1.24113 2.75069 2.91731 3.09154 3.21502 3.30368 3.33997 3.63114 4.29926 4.57341 4.64345 4.69223 4.76551 4.84228 4.86505 5.02698 5.09055 5.14996 5.21253 5.24036 5.43770 5.52136 5.53783 5.55204 5.73525 5.78390 5.82326 5.94728 6.00037 6.08030 6.11556 6.20276 6.36163 6.52466 6.55701 6.69904 6.70005 6.92660 7.11325 7.17753 7.37680 7.43268 7.52346 7.64283 7.72277 7.84191 8.17599 8.31726 8.74553 9.40901 9.56211 10.87506 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021779 B = 0.002420 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.329037 B =11568.796911 C =12449.880303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.091 3.909 4 C -0.188 4.188 5 C -0.102 4.102 6 C -0.103 4.103 7 C -0.109 4.109 8 C -0.087 4.087 9 C 0.132 3.868 10 N -0.674 5.674 11 C 0.514 3.486 12 O -0.497 6.497 13 C 0.034 3.966 14 N -0.510 5.510 15 C 0.054 3.946 16 C -0.146 4.146 17 C 0.252 3.748 18 O -0.578 6.578 19 C -0.535 4.535 20 H 0.061 0.939 21 C 0.071 3.929 22 N -0.893 5.893 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.284 1.284 27 C 0.059 3.941 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.148 0.852 37 H 0.411 0.589 38 H 0.063 0.937 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.030 0.970 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.377 0.623 45 H 0.266 0.734 46 H 0.048 0.952 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.480 7.832 6.764 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.232 6.232 3 C 0.044 3.956 4 C -0.208 4.208 5 C -0.121 4.121 6 C -0.104 4.104 7 C -0.165 4.165 8 C -0.107 4.107 9 C 0.037 3.963 10 N -0.321 5.321 11 C 0.301 3.699 12 O -0.368 6.368 13 C -0.098 4.098 14 N -0.234 5.234 15 C -0.073 4.073 16 C -0.186 4.186 17 C 0.212 3.788 18 O -0.385 6.385 19 C -0.574 4.574 20 H 0.080 0.920 21 C -0.132 4.132 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.210 1.210 27 C -0.068 4.068 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.166 0.834 37 H 0.247 0.753 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.226 0.774 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.609 8.507 5.725 24.825 hybrid contribution 0.806 -1.404 1.457 2.179 sum -21.802 7.103 7.183 24.029 Atomic orbital electron populations 1.23025 0.78352 1.03871 1.01233 1.86024 1.21359 1.26545 1.89282 1.18762 0.90526 0.84906 1.01386 1.20985 0.99647 0.91811 1.08313 1.20771 0.93904 0.96893 1.00523 1.19757 0.93357 0.95443 1.01852 1.20720 1.00385 0.92987 1.02458 1.21135 1.01484 0.89347 0.98755 1.17073 0.86639 0.87433 1.05187 1.43466 1.21602 1.13860 1.53145 1.21034 0.80217 0.91604 0.77026 1.90686 1.67019 1.35514 1.43619 1.22119 0.94801 0.93949 0.98895 1.63391 1.03516 1.15433 1.41071 1.22802 0.92715 0.97375 0.94437 1.23306 0.95665 0.99084 1.00506 1.19512 0.88107 0.89773 0.81422 1.86153 1.33671 1.81209 1.37490 1.21568 0.92864 0.93940 1.49021 0.92050 1.25010 0.97801 0.96364 0.93986 1.69757 1.10606 1.23113 1.49755 0.86426 0.79986 0.83026 0.77863 1.19706 1.20798 1.20963 1.23045 0.95327 0.88472 0.99936 0.92705 0.92773 0.88268 0.85306 0.85879 0.91139 0.91769 0.91446 0.83412 0.75318 0.91937 0.88127 0.91051 0.95126 0.90331 0.92711 0.77397 0.92434 0.93338 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.28 10.05 -19.64 -0.20 -3.48 16 3 C 0.09 1.06 6.70 -39.07 -0.26 0.80 16 4 C -0.19 -1.85 9.04 -39.46 -0.36 -2.21 16 5 C -0.10 -1.01 9.69 -39.56 -0.38 -1.39 16 6 C -0.10 -1.18 5.88 -104.62 -0.62 -1.80 16 7 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 8 C -0.09 -1.20 8.35 -39.42 -0.33 -1.53 16 9 C 0.13 1.77 6.32 -83.50 -0.53 1.24 16 10 N -0.67 -8.72 5.19 -9.75 -0.05 -8.77 16 11 C 0.51 8.18 7.32 -10.99 -0.08 8.10 16 12 O -0.50 -9.64 12.96 5.55 0.07 -9.56 16 13 C 0.03 0.54 5.03 -4.98 -0.03 0.51 16 14 N -0.51 -10.33 4.85 -232.69 -1.13 -11.46 16 15 C 0.05 1.14 5.65 -2.83 -0.02 1.12 16 16 C -0.15 -3.45 5.37 -24.90 -0.13 -3.58 16 17 C 0.25 6.34 0.87 -89.63 -0.08 6.26 16 18 O -0.58 -15.52 13.16 -35.23 -0.46 -15.98 16 19 C -0.54 -14.29 8.27 -34.44 -0.28 -14.58 16 20 H 0.06 1.62 7.79 -52.48 -0.41 1.21 16 21 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 22 N -0.89 -23.97 10.75 55.43 0.60 -23.38 16 23 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.06 1.28 5.86 -2.31 -0.01 1.27 16 28 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 29 H 0.05 0.27 7.67 -51.93 -0.40 -0.13 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.15 2.28 6.20 -52.48 -0.33 1.96 16 37 H 0.41 4.20 8.57 -40.82 -0.35 3.85 16 38 H 0.06 0.88 7.96 -51.93 -0.41 0.46 16 39 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 40 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 41 H 0.03 0.59 7.31 -51.93 -0.38 0.21 16 42 H 0.08 1.97 7.54 -51.93 -0.39 1.58 16 43 H 0.05 1.29 8.03 -51.93 -0.42 0.88 16 44 H 0.38 10.16 7.56 45.56 0.34 10.50 16 45 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 46 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 47 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -31.67 380.73 -8.68 -40.35 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -6.37 Total: 14.45 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -1.85 Total: -3.47 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: -0.58 Total: -43.61 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.59 Total: -29.02 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.67 -8.68 -40.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.555 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds