Wall clock time and date at job start Tue Mar 31 2020 18:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34704 * 117.00330 * 2 1 4 4 O 1.21469 * 119.99921 * 359.97438 * 3 2 1 5 5 C 1.47740 * 120.00268 * 180.02562 * 3 2 1 6 6 C 1.39667 * 120.11468 * 359.97438 * 5 3 2 7 7 C 1.37967 * 119.99255 * 179.97438 * 6 5 3 8 8 C 1.38261 * 120.22677 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.88308 * 179.97438 * 8 7 6 10 10 C 1.38960 * 120.23408 * 359.97438 * 8 7 6 11 11 N 1.39951 * 119.99696 * 179.97438 * 10 8 7 12 12 C 1.34782 * 119.99959 * 214.84320 * 11 10 8 13 13 O 1.21285 * 119.99713 * 356.12284 * 12 11 10 14 14 C 1.50706 * 119.99951 * 176.13214 * 12 11 10 15 15 H 1.09005 * 109.47097 * 59.99811 * 14 12 11 16 16 C 1.52997 * 109.47034 * 299.99355 * 14 12 11 17 17 N 1.46899 * 109.46583 * 179.97438 * 14 12 11 18 18 C 1.46907 * 110.99640 * 209.27595 * 17 14 12 19 19 H 1.08994 * 109.47290 * 329.46517 * 18 17 14 20 20 C 1.53003 * 109.46955 * 209.46493 * 18 17 14 21 21 C 1.50697 * 109.47069 * 89.46632 * 18 17 14 22 22 H 1.08003 * 120.00098 * 359.97438 * 21 18 17 23 23 C 1.37881 * 120.00070 * 179.97438 * 21 18 17 24 24 N 1.31510 * 119.99869 * 359.97438 * 23 21 18 25 25 Si 1.86795 * 120.00115 * 179.97438 * 23 21 18 26 26 H 1.48503 * 109.47075 * 89.99871 * 25 23 21 27 27 H 1.48496 * 109.47206 * 210.00028 * 25 23 21 28 28 H 1.48507 * 109.47319 * 330.00297 * 25 23 21 29 29 C 1.38618 * 120.00401 * 0.23092 * 10 8 7 30 30 H 1.08998 * 109.46567 * 60.00105 * 1 2 3 31 31 H 1.09002 * 109.47336 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46969 * 300.00608 * 1 2 3 33 33 H 1.08003 * 120.00644 * 359.95586 * 6 5 3 34 34 H 1.08000 * 119.88526 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.47555 * 270.01901 * 9 8 7 36 36 H 1.09003 * 109.47320 * 30.02276 * 9 8 7 37 37 H 1.09002 * 109.47065 * 150.02208 * 9 8 7 38 38 H 0.97006 * 120.00455 * 35.10728 * 11 10 8 39 39 H 1.09002 * 109.46880 * 55.03010 * 16 14 12 40 40 H 1.09001 * 109.46829 * 175.03062 * 16 14 12 41 41 H 1.08995 * 109.47129 * 295.03158 * 16 14 12 42 42 H 1.00900 * 111.00215 * 333.22735 * 17 14 12 43 43 H 1.08997 * 109.47103 * 304.85948 * 20 18 17 44 44 H 1.09001 * 109.46623 * 64.85827 * 20 18 17 45 45 H 1.08994 * 109.46748 * 184.85690 * 20 18 17 46 46 H 0.96997 * 120.00050 * 179.97438 * 24 23 21 47 47 H 1.08000 * 120.11296 * 179.74286 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2189 -0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.3020 0.1077 -0.0006 7 6 5.6796 0.1828 -0.0016 8 6 6.3096 1.4135 -0.0022 9 6 7.8148 1.4866 -0.0028 10 6 5.5597 2.5834 -0.0022 11 7 6.2025 3.8266 -0.0022 12 6 5.6611 4.8652 0.6647 13 8 4.5826 4.7424 1.2058 14 6 6.3957 6.1791 0.7378 15 1 6.5509 6.5651 -0.2697 16 6 7.7500 5.9689 1.4178 17 7 5.6018 7.1413 1.5135 18 6 5.8595 8.5171 1.0675 19 1 6.8829 8.5945 0.7006 20 6 5.6644 9.4788 2.2414 21 6 4.9009 8.8742 -0.0391 22 1 4.1733 8.1514 -0.3775 23 6 4.9526 10.1238 -0.6196 24 7 5.8383 11.0042 -0.2071 25 14 3.7649 10.5663 -1.9917 26 1 2.5350 11.1608 -1.4092 27 1 4.4054 11.5479 -2.9035 28 1 3.4098 9.3417 -2.7532 29 6 4.1750 2.5192 0.0032 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 3.8137 -0.8557 0.0006 34 1 6.2680 -0.7229 -0.0012 35 1 8.1782 1.5041 1.0248 36 1 8.2207 0.6153 -0.5169 37 1 8.1344 2.3932 -0.5166 38 1 7.0357 3.9418 -0.4853 39 1 8.3035 5.1906 0.8924 40 1 8.3177 6.8991 1.3919 41 1 7.5937 5.6674 2.4535 42 1 4.6180 6.9229 1.4625 43 1 4.6690 9.3400 2.6632 44 1 6.4145 9.2758 3.0057 45 1 5.7708 10.5055 1.8914 46 1 5.8750 11.8832 -0.6157 47 1 3.5905 3.4273 0.0074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:01 Heat of formation + Delta-G solvation = -92.970631 kcal Electronic energy + Delta-G solvation = -28808.500129 eV Core-core repulsion = 24763.440796 eV Total energy + Delta-G solvation = -4045.059332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.99177 -40.25065 -38.69213 -36.55575 -35.94511 -34.91296 -33.05625 -32.93541 -30.84032 -29.60466 -28.73509 -27.21955 -26.97772 -25.05254 -24.27388 -23.14666 -22.34317 -20.83248 -20.18156 -19.72249 -18.49268 -17.48123 -17.03539 -16.49055 -16.33771 -16.25151 -15.49121 -15.44536 -14.97354 -14.74707 -14.55509 -14.03237 -13.90409 -13.70735 -13.50579 -13.46934 -13.01482 -12.81205 -12.50644 -12.32968 -12.22504 -12.00308 -11.96683 -11.91695 -11.59681 -11.28185 -11.21463 -10.97865 -10.97800 -10.80590 -10.68523 -10.42736 -10.26740 -10.13372 -10.02296 -9.40661 -9.10695 -9.03545 -8.41882 -8.26778 -7.39358 -6.02672 -4.15313 0.49210 1.14798 2.33304 2.46503 2.79811 3.05828 3.27563 3.34390 3.38503 3.60683 4.39116 4.44388 4.52765 4.70728 4.80813 4.87769 4.91078 4.98405 5.08033 5.13837 5.17588 5.26331 5.29737 5.32935 5.39643 5.57776 5.66026 5.73629 5.77917 5.94780 6.00900 6.12216 6.15853 6.22786 6.27894 6.30400 6.54702 6.78902 6.86329 7.16698 7.26732 7.32630 7.47766 7.62391 7.73477 8.07403 8.11087 8.22091 8.28324 8.62515 8.97340 9.53155 10.98266 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.003115 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.048940 B = 8986.038442 C =10571.769457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.507 3.493 4 O -0.495 6.495 5 C -0.116 4.116 6 C -0.079 4.079 7 C -0.117 4.117 8 C -0.079 4.079 9 C -0.116 4.116 10 C 0.143 3.857 11 N -0.676 5.676 12 C 0.514 3.486 13 O -0.508 6.508 14 C 0.074 3.926 15 H 0.079 0.921 16 C -0.132 4.132 17 N -0.675 5.675 18 C 0.209 3.791 19 H 0.033 0.967 20 C -0.125 4.125 21 C -0.547 4.547 22 H 0.054 0.946 23 C 0.069 3.931 24 N -0.886 5.886 25 Si 0.889 3.111 26 H -0.279 1.279 27 H -0.286 1.286 28 H -0.275 1.275 29 C -0.054 4.054 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.411 0.589 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.347 0.653 43 H 0.025 0.975 44 H 0.013 0.987 45 H 0.084 0.916 46 H 0.262 0.738 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.497 -24.585 -1.223 24.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.351 3.649 4 O -0.382 6.382 5 C -0.117 4.117 6 C -0.098 4.098 7 C -0.136 4.136 8 C -0.082 4.082 9 C -0.172 4.172 10 C 0.048 3.952 11 N -0.324 5.324 12 C 0.303 3.697 13 O -0.380 6.380 14 C -0.040 4.040 15 H 0.097 0.903 16 C -0.190 4.190 17 N -0.310 5.310 18 C 0.101 3.899 19 H 0.051 0.949 20 C -0.183 4.183 21 C -0.587 4.587 22 H 0.072 0.928 23 C -0.134 4.134 24 N -0.524 5.524 25 Si 0.717 3.283 26 H -0.205 1.205 27 H -0.212 1.212 28 H -0.200 1.200 29 C -0.075 4.075 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.083 0.917 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.249 0.751 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.167 0.833 43 H 0.044 0.956 44 H 0.032 0.968 45 H 0.102 0.898 46 H 0.072 0.928 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.008 -24.046 -0.312 24.132 hybrid contribution -1.041 0.489 -1.907 2.227 sum 0.967 -23.557 -2.219 23.681 Atomic orbital electron populations 1.23280 0.75991 1.03618 1.02838 1.86514 1.23539 1.32724 1.84655 1.21194 0.89142 0.81461 0.73077 1.90894 1.66631 1.35907 1.44818 1.18879 0.88968 0.94471 1.09426 1.21354 0.93760 0.97728 0.96981 1.20796 0.94083 0.96772 1.01941 1.20009 0.96424 0.91907 0.99865 1.20792 0.90409 1.02972 1.03061 1.17404 0.91037 0.85187 1.01523 1.43692 1.27448 1.08478 1.52774 1.21534 0.86071 0.85780 0.76340 1.90688 1.20745 1.82358 1.44238 1.21425 0.94826 0.88651 0.99060 0.90324 1.21756 0.94524 1.01780 1.00929 1.61043 1.12497 1.03224 1.54234 1.19237 0.96301 0.82257 0.92095 0.94914 1.21675 0.97523 1.02729 0.96404 1.21883 1.18465 0.99384 1.18923 0.92776 1.24912 0.95372 0.96300 0.96818 1.69875 1.34713 1.06015 1.41784 0.86643 0.81347 0.78276 0.82047 1.20510 1.21152 1.20040 1.21467 0.93320 0.98170 0.94521 0.91788 0.88008 0.91726 0.84487 0.84800 0.90309 0.90784 0.91532 0.75100 0.93373 0.91126 0.91877 0.83272 0.95590 0.96801 0.89765 0.92840 0.82523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.07 9.81 -40.50 -0.40 -4.47 16 3 C 0.51 7.30 7.90 34.61 0.27 7.57 16 4 O -0.49 -8.82 16.13 -19.24 -0.31 -9.13 16 5 C -0.12 -1.56 5.87 -105.01 -0.62 -2.17 16 6 C -0.08 -0.80 9.61 -39.15 -0.38 -1.17 16 7 C -0.12 -1.02 9.67 -39.67 -0.38 -1.41 16 8 C -0.08 -0.78 5.90 -104.35 -0.62 -1.40 16 9 C -0.12 -0.78 9.76 36.00 0.35 -0.43 16 10 C 0.14 1.88 6.28 -83.74 -0.53 1.35 16 11 N -0.68 -8.76 4.84 -9.89 -0.05 -8.81 16 12 C 0.51 8.78 7.03 -10.98 -0.08 8.70 16 13 O -0.51 -10.47 12.99 5.55 0.07 -10.40 16 14 C 0.07 1.33 2.82 -68.86 -0.19 1.13 16 15 H 0.08 1.47 7.72 -51.93 -0.40 1.07 16 16 C -0.13 -1.90 9.40 37.16 0.35 -1.55 16 17 N -0.68 -14.81 6.00 -102.16 -0.61 -15.42 16 18 C 0.21 5.20 2.39 -68.86 -0.16 5.03 16 19 H 0.03 0.86 7.47 -51.93 -0.39 0.47 16 20 C -0.12 -3.11 9.36 37.16 0.35 -2.76 16 21 C -0.55 -14.97 8.50 -34.44 -0.29 -15.26 16 22 H 0.05 1.51 7.67 -52.48 -0.40 1.11 16 23 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 24 N -0.89 -24.91 11.29 55.43 0.63 -24.29 16 25 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 C -0.05 -0.84 8.24 -38.97 -0.32 -1.16 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.14 1.08 7.61 -52.48 -0.40 0.68 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.36 8.08 -51.93 -0.42 -0.05 16 37 H 0.07 0.40 6.50 -51.93 -0.34 0.06 16 38 H 0.41 4.00 6.69 -40.82 -0.27 3.72 16 39 H 0.05 0.51 7.52 -51.93 -0.39 0.12 16 40 H 0.07 1.08 7.87 -51.93 -0.41 0.67 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.35 8.20 6.88 -39.29 -0.27 7.93 16 43 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.08 2.26 5.95 -51.93 -0.31 1.95 16 46 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.16 2.94 5.80 -52.49 -0.30 2.63 16 LS Contribution 389.61 15.07 5.87 5.87 Total: -1.00 -33.21 389.61 -7.91 -41.12 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -6.82 Total: 9.45 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.27 Total: -0.36 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.03 Total: -48.52 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.64 Total: -24.00 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.21 -7.91 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.851 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds