Wall clock time and date at job start Tue Mar 31 2020 18:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34704 * 117.00330 * 2 1 4 4 O 1.21469 * 119.99921 * 359.97438 * 3 2 1 5 5 C 1.47740 * 120.00268 * 180.02562 * 3 2 1 6 6 C 1.39667 * 120.11468 * 359.97438 * 5 3 2 7 7 C 1.37967 * 119.99255 * 179.97438 * 6 5 3 8 8 C 1.38261 * 120.22677 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.88308 * 179.97438 * 8 7 6 10 10 C 1.38960 * 120.23408 * 359.97438 * 8 7 6 11 11 N 1.39951 * 119.99696 * 179.97438 * 10 8 7 12 12 C 1.34782 * 119.99959 * 214.84320 * 11 10 8 13 13 O 1.21285 * 119.99713 * 356.12284 * 12 11 10 14 14 C 1.50706 * 119.99951 * 176.13214 * 12 11 10 15 15 H 1.09005 * 109.47097 * 59.99811 * 14 12 11 16 16 C 1.52997 * 109.47034 * 299.99355 * 14 12 11 17 17 N 1.46899 * 109.46583 * 179.97438 * 14 12 11 18 18 C 1.46907 * 110.99640 * 209.27595 * 17 14 12 19 19 H 1.08994 * 109.47290 * 329.46517 * 18 17 14 20 20 C 1.53003 * 109.46955 * 209.46493 * 18 17 14 21 21 C 1.50697 * 109.47069 * 89.46632 * 18 17 14 22 22 H 1.08003 * 120.00098 * 359.97438 * 21 18 17 23 23 C 1.37881 * 120.00070 * 179.97438 * 21 18 17 24 24 N 1.31510 * 119.99869 * 359.97438 * 23 21 18 25 25 Si 1.86795 * 120.00115 * 179.97438 * 23 21 18 26 26 H 1.48503 * 109.47075 * 89.99871 * 25 23 21 27 27 H 1.48496 * 109.47206 * 210.00028 * 25 23 21 28 28 H 1.48507 * 109.47319 * 330.00297 * 25 23 21 29 29 C 1.38618 * 120.00401 * 0.23092 * 10 8 7 30 30 H 1.08998 * 109.46567 * 60.00105 * 1 2 3 31 31 H 1.09002 * 109.47336 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46969 * 300.00608 * 1 2 3 33 33 H 1.08003 * 120.00644 * 359.95586 * 6 5 3 34 34 H 1.08000 * 119.88526 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.47555 * 270.01901 * 9 8 7 36 36 H 1.09003 * 109.47320 * 30.02276 * 9 8 7 37 37 H 1.09002 * 109.47065 * 150.02208 * 9 8 7 38 38 H 0.97006 * 120.00455 * 35.10728 * 11 10 8 39 39 H 1.09002 * 109.46880 * 55.03010 * 16 14 12 40 40 H 1.09001 * 109.46829 * 175.03062 * 16 14 12 41 41 H 1.08995 * 109.47129 * 295.03158 * 16 14 12 42 42 H 1.00900 * 111.00215 * 333.22735 * 17 14 12 43 43 H 1.08997 * 109.47103 * 304.85948 * 20 18 17 44 44 H 1.09001 * 109.46623 * 64.85827 * 20 18 17 45 45 H 1.08994 * 109.46748 * 184.85690 * 20 18 17 46 46 H 0.96997 * 120.00050 * 179.97438 * 24 23 21 47 47 H 1.08000 * 120.11296 * 179.74286 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2189 -0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.3020 0.1077 -0.0006 7 6 5.6796 0.1828 -0.0016 8 6 6.3096 1.4135 -0.0022 9 6 7.8148 1.4866 -0.0028 10 6 5.5597 2.5834 -0.0022 11 7 6.2025 3.8266 -0.0022 12 6 5.6611 4.8652 0.6647 13 8 4.5826 4.7424 1.2058 14 6 6.3957 6.1791 0.7378 15 1 6.5509 6.5651 -0.2697 16 6 7.7500 5.9689 1.4178 17 7 5.6018 7.1413 1.5135 18 6 5.8595 8.5171 1.0675 19 1 6.8829 8.5945 0.7006 20 6 5.6644 9.4788 2.2414 21 6 4.9009 8.8742 -0.0391 22 1 4.1733 8.1514 -0.3775 23 6 4.9526 10.1238 -0.6196 24 7 5.8383 11.0042 -0.2071 25 14 3.7649 10.5663 -1.9917 26 1 2.5350 11.1608 -1.4092 27 1 4.4054 11.5479 -2.9035 28 1 3.4098 9.3417 -2.7532 29 6 4.1750 2.5192 0.0032 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 3.8137 -0.8557 0.0006 34 1 6.2680 -0.7229 -0.0012 35 1 8.1782 1.5041 1.0248 36 1 8.2207 0.6153 -0.5169 37 1 8.1344 2.3932 -0.5166 38 1 7.0357 3.9418 -0.4853 39 1 8.3035 5.1906 0.8924 40 1 8.3177 6.8991 1.3919 41 1 7.5937 5.6674 2.4535 42 1 4.6180 6.9229 1.4625 43 1 4.6690 9.3400 2.6632 44 1 6.4145 9.2758 3.0057 45 1 5.7708 10.5055 1.8914 46 1 5.8750 11.8832 -0.6157 47 1 3.5905 3.4273 0.0074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602864606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:00 Heat of formation + Delta-G solvation = -115.241595 kcal Electronic energy + Delta-G solvation = -28809.465870 eV Core-core repulsion = 24763.440796 eV Total energy + Delta-G solvation = -4046.025074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.07280 -41.39234 -39.78636 -37.68054 -37.59828 -36.08098 -34.89406 -33.81090 -32.50892 -30.74634 -29.51071 -28.85210 -27.74771 -27.19241 -25.50781 -24.07399 -23.43189 -21.98158 -21.79182 -21.11217 -19.56472 -18.96244 -18.36422 -17.85216 -17.48319 -17.42227 -16.77892 -16.65373 -16.39465 -16.13312 -15.88846 -15.18296 -14.85346 -14.77974 -14.70840 -14.55606 -14.36336 -14.13120 -13.71149 -13.49048 -13.32005 -13.11680 -13.05875 -13.02111 -12.97831 -12.83393 -12.70222 -12.51219 -12.41472 -12.26262 -12.06599 -11.96529 -11.90606 -11.79844 -11.50835 -11.16730 -10.78388 -10.54591 -9.91315 -9.27671 -9.21032 -8.13241 -6.34191 -0.44376 0.20681 1.28604 1.33249 1.36099 1.44726 1.52310 1.55553 1.92909 2.35761 2.68615 3.08069 3.54901 3.56222 3.62819 3.80252 3.89529 4.09655 4.20097 4.23244 4.26687 4.26950 4.36756 4.39879 4.63872 4.72832 4.75770 4.81186 4.85407 4.87287 4.96790 5.03947 5.14331 5.21248 5.22765 5.24180 5.25666 5.33487 5.35951 5.40197 5.42658 5.60798 5.85363 6.00945 6.08766 6.20160 6.34204 6.58165 6.67851 6.88836 7.02090 7.37333 8.84972 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.003115 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.048940 B = 8986.038442 C =10571.769457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.506 3.494 4 O -0.546 6.546 5 C -0.140 4.140 6 C -0.062 4.062 7 C -0.106 4.106 8 C -0.061 4.061 9 C -0.119 4.119 10 C 0.119 3.881 11 N -0.655 5.655 12 C 0.516 3.484 13 O -0.552 6.552 14 C 0.070 3.930 15 H 0.069 0.931 16 C -0.122 4.122 17 N -0.676 5.676 18 C 0.217 3.783 19 H 0.020 0.980 20 C -0.117 4.117 21 C -0.565 4.565 22 H 0.038 0.962 23 C 0.028 3.972 24 N -0.905 5.905 25 Si 0.947 3.053 26 H -0.278 1.278 27 H -0.273 1.273 28 H -0.279 1.279 29 C -0.085 4.085 30 H 0.059 0.941 31 H 0.144 0.856 32 H 0.057 0.943 33 H 0.165 0.835 34 H 0.182 0.818 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.428 0.572 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.333 0.667 43 H 0.018 0.982 44 H 0.030 0.970 45 H 0.064 0.936 46 H 0.265 0.735 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.698 -28.089 -1.977 28.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.353 3.647 4 O -0.437 6.437 5 C -0.142 4.142 6 C -0.080 4.080 7 C -0.124 4.124 8 C -0.064 4.064 9 C -0.175 4.175 10 C 0.024 3.976 11 N -0.304 5.304 12 C 0.304 3.696 13 O -0.428 6.428 14 C -0.043 4.043 15 H 0.087 0.913 16 C -0.180 4.180 17 N -0.309 5.309 18 C 0.108 3.892 19 H 0.038 0.962 20 C -0.175 4.175 21 C -0.604 4.604 22 H 0.057 0.943 23 C -0.173 4.173 24 N -0.543 5.543 25 Si 0.773 3.227 26 H -0.204 1.204 27 H -0.198 1.198 28 H -0.204 1.204 29 C -0.106 4.106 30 H 0.078 0.922 31 H 0.162 0.838 32 H 0.076 0.924 33 H 0.183 0.817 34 H 0.199 0.801 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.269 0.731 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.152 0.848 43 H 0.038 0.962 44 H 0.049 0.951 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.263 -27.604 -1.091 27.952 hybrid contribution -1.720 1.417 -1.684 2.793 sum 2.543 -26.187 -2.776 26.456 Atomic orbital electron populations 1.23620 0.74346 1.06189 1.02345 1.86502 1.25125 1.30873 1.83881 1.21561 0.89789 0.81544 0.71807 1.90864 1.67746 1.37645 1.47491 1.18953 0.88665 0.95130 1.11415 1.21717 0.94486 0.97299 0.94547 1.21358 0.93634 0.97926 0.99457 1.20440 0.98224 0.90797 0.96897 1.20961 0.87543 1.04845 1.04141 1.17570 0.90426 0.86030 1.03534 1.43340 1.27559 1.07822 1.51632 1.21319 0.85388 0.86358 0.76506 1.90690 1.22476 1.83076 1.46549 1.21554 0.95950 0.88324 0.98490 0.91298 1.21719 0.92454 1.02907 1.00942 1.61006 1.12007 1.02806 1.55097 1.19025 0.94840 0.83935 0.91384 0.96206 1.21551 0.97649 1.01557 0.96780 1.22083 1.18805 0.99483 1.20021 0.94336 1.25554 0.96779 0.96185 0.98757 1.69959 1.35568 1.06267 1.42549 0.85746 0.79454 0.77907 0.79636 1.20414 1.19843 1.20370 1.21219 0.94490 0.97411 0.97463 0.92229 0.83765 0.92449 0.81702 0.80102 0.89376 0.87841 0.90815 0.73120 0.88816 0.91971 0.92230 0.84848 0.96241 0.95078 0.91777 0.92516 0.87304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.35 -7.75 9.81 -56.13 -0.55 -8.30 16 3 C 0.51 15.30 7.90 70.33 0.56 15.85 16 4 O -0.55 -21.29 16.13 19.94 0.32 -20.97 16 5 C -0.14 -3.83 5.87 -20.11 -0.12 -3.94 16 6 C -0.06 -1.07 9.61 22.55 0.22 -0.85 16 7 C -0.11 -1.35 9.67 22.21 0.21 -1.13 16 8 C -0.06 -0.99 5.90 -19.69 -0.12 -1.11 16 9 C -0.12 -1.00 9.76 71.24 0.70 -0.30 16 10 C 0.12 3.04 6.28 38.11 0.24 3.28 16 11 N -0.66 -16.71 4.84 -303.60 -1.47 -18.18 16 12 C 0.52 18.28 7.03 87.66 0.62 18.89 16 13 O -0.55 -24.51 12.99 -3.05 -0.04 -24.55 16 14 C 0.07 2.57 2.82 44.17 0.12 2.70 16 15 H 0.07 2.66 7.72 -2.38 -0.02 2.64 16 16 C -0.12 -3.39 9.40 71.98 0.68 -2.72 16 17 N -0.68 -30.91 6.00 -477.14 -2.86 -33.77 16 18 C 0.22 11.15 2.39 44.17 0.11 11.25 16 19 H 0.02 1.07 7.47 -2.39 -0.02 1.06 16 20 C -0.12 -5.97 9.36 71.98 0.67 -5.29 16 21 C -0.56 -31.97 8.50 25.60 0.22 -31.75 16 22 H 0.04 2.25 7.67 -2.91 -0.02 2.23 16 23 C 0.03 1.57 5.29 84.66 0.45 2.02 16 24 N -0.90 -51.55 11.29 21.45 0.24 -51.31 16 25 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 26 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 27 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 28 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 29 C -0.09 -2.78 8.24 22.67 0.19 -2.59 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.17 1.91 7.61 -2.91 -0.02 1.88 16 34 H 0.18 0.72 8.06 -2.91 -0.02 0.69 16 35 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.10 0.35 8.08 -2.39 -0.02 0.33 16 37 H 0.07 0.54 6.50 -2.39 -0.02 0.53 16 38 H 0.43 7.51 6.69 -92.70 -0.62 6.89 16 39 H 0.09 1.71 7.52 -2.39 -0.02 1.69 16 40 H 0.06 1.85 7.87 -2.39 -0.02 1.83 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.33 16.77 6.88 -89.69 -0.62 16.15 16 43 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.06 3.52 5.95 -2.39 -0.01 3.51 16 46 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 47 H 0.11 4.61 5.80 -2.91 -0.02 4.59 16 Total: -1.00 -78.82 389.61 3.37 -75.45 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: -0.23 Total: 28.87 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 5.93 Total: 5.96 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -4.09 Total: -103.26 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -0.27 Total: -53.82 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -78.82 3.37 -75.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.796 kcal (2) G-P(sol) polarization free energy of solvation -78.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds