Wall clock time and date at job start Tue Mar 31 2020 17:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38286 * 119.97081 * 2 1 4 4 C 1.38241 * 120.11126 * 180.02562 * 3 2 1 5 5 C 1.38171 * 120.05455 * 359.97438 * 4 3 2 6 6 C 1.38714 * 119.94311 * 0.02562 * 5 4 3 7 7 O 1.35902 * 120.05188 * 179.97438 * 6 5 4 8 8 C 1.42895 * 117.00511 * 5.41824 * 7 6 5 9 9 H 1.09006 * 109.47011 * 35.13014 * 8 7 6 10 10 C 1.52998 * 109.47491 * 275.13316 * 8 7 6 11 11 C 1.50698 * 109.47271 * 155.12541 * 8 7 6 12 12 O 1.21275 * 119.99889 * 5.27938 * 11 8 7 13 13 N 1.34777 * 120.00175 * 184.99957 * 11 8 7 14 14 N 1.40099 * 119.99972 * 180.02562 * 13 11 8 15 15 C 1.34776 * 119.99482 * 180.02562 * 14 13 11 16 16 O 1.21283 * 120.00488 * 0.02562 * 15 14 13 17 17 C 1.50708 * 119.99478 * 180.02562 * 15 14 13 18 18 C 1.53007 * 109.46788 * 179.97438 * 17 15 14 19 19 C 1.50698 * 109.46996 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00203 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00280 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99765 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00084 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47578 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47289 * 120.00258 * 23 21 19 26 26 H 1.48503 * 109.47055 * 239.99776 * 23 21 19 27 27 C 1.38126 * 119.97088 * 180.25491 * 2 1 3 28 28 C 1.50699 * 120.02857 * 0.02657 * 27 2 1 29 29 H 1.08996 * 109.46928 * 89.99884 * 1 2 3 30 30 H 1.08997 * 109.47053 * 209.99515 * 1 2 3 31 31 H 1.09002 * 109.47048 * 330.00163 * 1 2 3 32 32 H 1.08003 * 119.94694 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.97390 * 179.97438 * 4 3 2 34 34 H 1.08002 * 120.02774 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.47596 * 59.99372 * 10 8 7 36 36 H 1.08997 * 109.47599 * 180.02562 * 10 8 7 37 37 H 1.09006 * 109.46747 * 299.99860 * 10 8 7 38 38 H 0.97005 * 119.99633 * 0.02562 * 13 11 8 39 39 H 0.96996 * 120.00036 * 359.97438 * 14 13 11 40 40 H 1.08999 * 109.46950 * 299.99025 * 17 15 14 41 41 H 1.08997 * 109.47171 * 59.99808 * 17 15 14 42 42 H 1.09001 * 109.47317 * 300.00028 * 18 17 15 43 43 H 1.08997 * 109.47303 * 60.00034 * 18 17 15 44 44 H 0.96995 * 119.99769 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.46913 * 270.23234 * 28 27 2 46 46 H 1.09000 * 109.47437 * 30.22729 * 28 27 2 47 47 H 1.08999 * 109.47203 * 150.23383 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0071 -0.0005 6 6 3.5845 -1.1959 -0.0005 7 8 4.2658 -2.3718 -0.0011 8 6 5.6878 -2.2979 0.1186 9 1 5.9546 -1.4688 0.7741 10 6 6.3051 -2.0744 -1.2634 11 6 6.2107 -3.5861 0.7001 12 8 5.4548 -4.5143 0.8948 13 7 7.5192 -3.7086 0.9985 14 7 8.0054 -4.9065 1.5386 15 6 9.3139 -5.0287 1.8374 16 8 10.0704 -4.1017 1.6393 17 6 9.8369 -6.3175 2.4178 18 6 11.3422 -6.1928 2.6623 19 6 11.8651 -7.4812 3.2433 20 1 11.1914 -8.3066 3.4201 21 6 13.2039 -7.6067 3.5481 22 7 14.0245 -6.6018 3.3324 23 14 13.8522 -9.2040 4.2676 24 1 12.7347 -10.1712 4.4127 25 1 14.8842 -9.7714 3.3632 26 1 14.4530 -8.9390 5.5996 27 6 2.1971 -1.1965 -0.0053 28 6 1.4436 -2.5016 -0.0117 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 1.6565 2.1325 0.0004 33 1 4.1175 2.1382 -0.0010 34 1 5.3552 0.0102 -0.0014 35 1 5.9269 -1.1427 -1.6839 36 1 7.3898 -2.0185 -1.1722 37 1 6.0382 -2.9035 -1.9188 38 1 8.1245 -2.9674 0.8393 39 1 7.4001 -5.6474 1.6981 40 1 9.3311 -6.5227 3.3613 41 1 9.6489 -7.1331 1.7197 42 1 11.8478 -5.9876 1.7187 43 1 11.5306 -5.3771 3.3602 44 1 14.9663 -6.6903 3.5465 45 1 1.2579 -2.8190 1.0144 46 1 0.4931 -2.3699 -0.5289 47 1 2.0346 -3.2599 -0.5252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812447062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:38 Heat of formation + Delta-G solvation = -67.502453 kcal Electronic energy + Delta-G solvation = -27557.817498 eV Core-core repulsion = 23513.862549 eV Total energy + Delta-G solvation = -4043.954949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.13204 -40.14870 -38.98225 -37.87346 -35.30125 -33.79397 -33.57541 -33.06424 -31.66732 -31.10408 -30.02298 -27.79806 -26.67036 -25.93180 -24.95088 -22.50341 -21.93149 -21.75952 -20.93581 -19.72904 -18.46348 -17.88517 -17.43546 -16.74340 -16.20020 -16.13311 -16.04199 -15.47716 -15.32850 -14.83137 -14.77772 -14.48654 -14.43296 -14.09625 -13.55549 -13.52970 -13.33208 -13.07110 -12.91558 -12.82371 -12.65905 -12.53932 -12.27238 -12.22183 -12.00459 -11.62950 -11.38806 -11.27521 -11.20000 -11.07422 -10.98064 -10.64192 -10.25827 -10.07732 -9.83730 -9.45884 -9.15474 -8.96276 -8.46190 -8.40792 -8.32044 -6.02491 -4.07142 0.93604 1.07569 1.59425 2.13689 2.83549 2.98830 3.29884 3.35341 3.37451 3.40728 3.80646 4.21846 4.39138 4.40358 4.42701 4.45855 4.51501 4.64672 4.80277 4.84481 4.99376 5.11185 5.16226 5.21375 5.29949 5.31759 5.33191 5.41332 5.44340 5.49376 5.62004 5.63472 5.95372 6.00940 6.06779 6.07551 6.10792 6.24580 6.39860 6.57687 6.66419 6.79541 7.02679 7.58781 7.66919 7.74443 7.81089 7.98154 8.29630 8.54272 9.00673 9.57086 11.08438 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032983 B = 0.001695 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.715570 B =16511.212687 C =16980.511012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.051 4.051 3 C -0.155 4.155 4 C -0.082 4.082 5 C -0.214 4.214 6 C 0.132 3.868 7 O -0.280 6.280 8 C 0.079 3.921 9 H 0.103 0.897 10 C -0.179 4.179 11 C 0.515 3.485 12 O -0.519 6.519 13 N -0.518 5.518 14 N -0.534 5.534 15 C 0.514 3.486 16 O -0.533 6.533 17 C -0.119 4.119 18 C 0.037 3.963 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.059 3.941 22 N -0.889 5.889 23 Si 0.894 3.106 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 C -0.113 4.113 28 C -0.108 4.108 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.431 0.569 39 H 0.430 0.570 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.261 0.739 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.297 15.975 -9.347 32.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.052 4.052 3 C -0.173 4.173 4 C -0.100 4.100 5 C -0.233 4.233 6 C 0.087 3.913 7 O -0.192 6.192 8 C 0.018 3.982 9 H 0.121 0.879 10 C -0.237 4.237 11 C 0.299 3.701 12 O -0.393 6.393 13 N -0.265 5.265 14 N -0.286 5.286 15 C 0.303 3.697 16 O -0.406 6.406 17 C -0.160 4.160 18 C 0.000 4.000 19 C -0.567 4.567 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.528 5.528 23 Si 0.722 3.278 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.114 4.114 28 C -0.165 4.165 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.273 0.727 39 H 0.272 0.728 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -26.171 15.822 -9.348 31.979 hybrid contribution 0.747 -0.511 0.404 0.991 sum -25.425 15.311 -8.944 30.997 Atomic orbital electron populations 1.20841 0.90764 1.03118 1.02571 1.19614 0.96045 0.91763 0.97736 1.20938 0.94178 0.97461 1.04742 1.20902 0.94163 0.97366 0.97534 1.21285 1.00356 0.92201 1.09450 1.18816 0.91269 0.84417 0.96790 1.86177 1.17633 1.27848 1.87567 1.21963 0.81111 0.96102 0.99057 0.87896 1.22398 1.01828 1.04452 0.94989 1.20139 0.80932 0.89763 0.79285 1.90761 1.55871 1.40032 1.52641 1.44599 1.08204 1.10156 1.63587 1.45599 1.09813 1.07444 1.65747 1.22155 0.78653 0.92029 0.76905 1.90693 1.55777 1.41300 1.52839 1.21920 1.02396 0.90961 1.00737 1.18952 0.85406 0.97481 0.98204 1.21226 0.93672 0.99235 1.42556 0.92337 1.25018 0.97050 0.96559 0.95705 1.70001 1.04105 1.30788 1.47870 0.86505 0.78950 0.83547 0.78788 1.19684 1.20990 1.20997 1.19110 0.90133 0.96152 1.05958 1.20661 0.99430 0.93854 1.02546 0.90856 0.90987 0.91306 0.85934 0.85692 0.85177 0.90144 0.89843 0.90286 0.72748 0.72818 0.89385 0.89379 0.95573 0.95581 0.92935 0.91239 0.91544 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.18 36.01 0.33 -0.31 16 2 C -0.05 -0.42 5.88 -104.64 -0.62 -1.03 16 3 C -0.15 -1.16 9.70 -39.56 -0.38 -1.54 16 4 C -0.08 -0.61 10.04 -39.60 -0.40 -1.01 16 5 C -0.21 -1.80 8.24 -39.43 -0.32 -2.13 16 6 C 0.13 1.36 6.57 -39.22 -0.26 1.10 16 7 O -0.28 -3.21 8.39 -39.29 -0.33 -3.54 16 8 C 0.08 0.75 2.63 -27.89 -0.07 0.67 16 9 H 0.10 0.75 6.32 -51.93 -0.33 0.42 16 10 C -0.18 -1.31 9.12 37.16 0.34 -0.97 16 11 C 0.51 6.45 7.29 -10.99 -0.08 6.37 16 12 O -0.52 -8.33 16.35 -14.29 -0.23 -8.57 16 13 N -0.52 -6.53 6.22 31.22 0.19 -6.33 16 14 N -0.53 -7.75 6.26 31.22 0.20 -7.55 16 15 C 0.51 9.22 7.95 -10.98 -0.09 9.14 16 16 O -0.53 -11.37 15.82 5.56 0.09 -11.28 16 17 C -0.12 -2.26 5.64 -27.88 -0.16 -2.42 16 18 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 19 C -0.53 -14.53 9.11 -34.44 -0.31 -14.85 16 20 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 23 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C -0.11 -1.09 5.89 -104.48 -0.62 -1.71 16 28 C -0.11 -0.95 8.96 36.01 0.32 -0.62 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.37 6.72 -51.93 -0.35 0.02 16 31 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 32 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.13 0.85 5.43 -52.49 -0.28 0.56 16 35 H 0.08 0.49 6.90 -51.93 -0.36 0.13 16 36 H 0.08 0.50 7.92 -51.93 -0.41 0.09 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.43 4.82 7.78 -182.59 -1.42 3.40 16 39 H 0.43 5.66 8.00 -182.60 -1.46 4.19 16 40 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 43 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.45 6.72 -51.93 -0.35 0.10 16 47 H 0.07 0.74 7.53 -51.93 -0.39 0.35 16 LS Contribution 393.60 15.07 5.93 5.93 Total: -1.00 -35.50 393.60 -10.08 -45.59 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -9.12 Total: 2.40 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -2.53 Total: -6.91 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 1.13 Total: -39.89 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.48 Total: -23.38 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.50 -10.08 -45.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812447062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.914 kcal (2) G-P(sol) polarization free energy of solvation -35.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds