Wall clock time and date at job start Tue Mar 31 2020 18:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38119 * 120.03220 * 2 1 4 4 C 1.38284 * 120.06646 * 179.72408 * 3 2 1 5 5 C 1.38289 * 120.14265 * 0.28265 * 4 3 2 6 6 C 1.38108 * 120.07116 * 359.94929 * 5 4 3 7 7 C 1.50695 * 120.03771 * 180.02562 * 6 5 4 8 8 C 1.38870 * 120.03915 * 180.21231 * 2 1 3 9 9 N 1.39929 * 120.07080 * 359.97438 * 8 2 1 10 10 C 1.34783 * 119.99556 * 53.67267 * 9 8 2 11 11 O 1.21287 * 120.00222 * 4.13964 * 10 9 8 12 12 C 1.50701 * 119.99460 * 184.13259 * 10 9 8 13 13 C 1.53006 * 109.46780 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46834 * 180.02562 * 13 12 10 15 15 N 1.46505 * 109.46787 * 179.97438 * 14 13 12 16 16 C 1.36940 * 120.00092 * 87.94840 * 15 14 13 17 17 H 1.08000 * 119.99960 * 9.61476 * 16 15 14 18 18 C 1.38809 * 119.99833 * 189.61688 * 16 15 14 19 19 N 1.31618 * 120.00124 * 26.00336 * 18 16 15 20 20 Si 1.86797 * 119.99859 * 206.00169 * 18 16 15 21 21 H 1.48503 * 109.47300 * 59.99935 * 20 18 16 22 22 H 1.48500 * 109.47464 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47088 * 300.00102 * 20 18 16 24 24 C 1.46499 * 120.00050 * 267.94470 * 15 14 13 25 25 C 1.50706 * 109.47005 * 89.99980 * 24 15 14 26 26 O 1.20826 * 119.99796 * 0.02562 * 25 24 15 27 27 O 1.34226 * 119.99674 * 180.02562 * 25 24 15 28 28 H 1.08999 * 109.47044 * 83.21337 * 1 2 3 29 29 H 1.09005 * 109.46681 * 203.21282 * 1 2 3 30 30 H 1.08994 * 109.47094 * 323.21391 * 1 2 3 31 31 H 1.07992 * 119.96804 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.92872 * 180.25536 * 4 3 2 33 33 H 1.07996 * 119.96500 * 179.97438 * 5 4 3 34 34 H 1.08991 * 109.47587 * 89.99979 * 7 6 5 35 35 H 1.09007 * 109.47298 * 210.00690 * 7 6 5 36 36 H 1.09002 * 109.47108 * 329.99993 * 7 6 5 37 37 H 0.96991 * 120.00045 * 233.68143 * 9 8 2 38 38 H 1.08995 * 109.47633 * 299.99799 * 12 10 9 39 39 H 1.09000 * 109.47130 * 60.00560 * 12 10 9 40 40 H 1.08993 * 109.46988 * 299.99792 * 13 12 10 41 41 H 1.09000 * 109.47165 * 60.00174 * 13 12 10 42 42 H 1.08993 * 109.47065 * 299.99624 * 14 13 12 43 43 H 1.09000 * 109.47201 * 60.00076 * 14 13 12 44 44 H 0.97003 * 120.00024 * 180.02562 * 19 18 16 45 45 H 1.08993 * 109.47353 * 210.00301 * 24 15 14 46 46 H 1.09003 * 109.47166 * 330.00576 * 24 15 14 47 47 H 0.96708 * 116.99701 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1958 0.0000 4 6 3.5811 1.1966 0.0058 5 6 4.2762 0.0011 0.0056 6 6 3.5909 -1.1979 0.0008 7 6 4.3492 -2.5002 0.0013 8 6 2.2022 -1.2022 -0.0045 9 7 1.5049 -2.4153 -0.0084 10 6 0.5692 -2.6516 -0.9493 11 8 0.3841 -1.8456 -1.8365 12 6 -0.2469 -3.9176 -0.8990 13 6 -1.2280 -3.9388 -2.0729 14 6 -2.0570 -5.2237 -2.0215 15 7 -2.9968 -5.2438 -3.1452 16 6 -2.6110 -5.7650 -4.3514 17 1 -1.6763 -6.2995 -4.4345 18 6 -3.4214 -5.6062 -5.4671 19 7 -4.2494 -4.5857 -5.5393 20 14 -3.3366 -6.8409 -6.8663 21 1 -3.6877 -8.1910 -6.3570 22 1 -4.2941 -6.4487 -7.9314 23 1 -1.9600 -6.8644 -7.4230 24 6 -4.3494 -4.7062 -2.9785 25 6 -4.3540 -3.2403 -3.3282 26 8 -3.3324 -2.7002 -3.6810 27 8 -5.4931 -2.5348 -3.2478 28 1 -0.3633 0.1214 -1.0205 29 1 -0.3633 -0.9445 0.4051 30 1 -0.3633 0.8230 0.6154 31 1 1.6583 2.1310 0.0004 32 1 4.1194 2.1329 0.0099 33 1 5.3562 0.0051 0.0097 34 1 4.5281 -2.8161 1.0289 35 1 3.7649 -3.2611 -0.5163 36 1 5.3031 -2.3654 -0.5087 37 1 1.6948 -3.0860 0.6660 38 1 0.4161 -4.7802 -0.9646 39 1 -0.8011 -3.9556 0.0388 40 1 -1.8911 -3.0762 -2.0078 41 1 -0.6735 -3.9009 -3.0106 42 1 -1.3942 -6.0865 -2.0864 43 1 -2.6115 -5.2611 -1.0839 44 1 -4.8160 -4.4750 -6.3188 45 1 -5.0358 -5.2389 -3.6366 46 1 -4.6661 -4.8337 -1.9433 47 1 -5.4466 -1.5978 -3.4826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832965062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:27 Heat of formation + Delta-G solvation = -82.313293 kcal Electronic energy + Delta-G solvation = -29251.087794 eV Core-core repulsion = 25206.490599 eV Total energy + Delta-G solvation = -4044.597195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.72400 -38.69998 -38.49137 -36.02344 -34.73426 -34.27452 -33.63099 -33.06248 -31.13193 -30.49657 -27.86959 -27.13521 -26.73134 -25.97519 -23.32289 -21.93068 -21.11374 -20.73469 -19.96677 -19.78235 -17.63660 -16.97511 -16.73040 -16.46809 -16.09694 -15.39748 -15.16576 -15.00093 -14.92885 -14.20730 -14.05194 -14.02056 -13.68742 -13.60387 -13.23056 -13.16718 -13.05499 -12.86699 -12.70580 -12.13974 -11.95411 -11.67780 -11.52264 -11.43374 -11.32571 -11.24965 -11.13767 -10.97887 -10.72944 -10.59628 -10.28718 -10.00692 -9.94702 -9.83851 -9.62781 -9.58002 -8.96879 -8.64179 -8.47631 -8.29566 -7.08469 -5.90247 -3.15884 1.19265 1.28303 2.80736 3.15444 3.39530 3.45691 3.46804 3.64073 4.05107 4.40561 4.64769 4.66192 4.70675 4.87931 4.92891 5.12237 5.23237 5.27006 5.31810 5.36843 5.40297 5.43729 5.48076 5.60858 5.67576 5.69253 5.78642 5.96270 6.04333 6.09138 6.27063 6.30466 6.33127 6.34939 6.44048 6.46316 6.50160 6.55729 6.98538 6.99503 7.01593 7.07980 7.39242 7.44384 7.73542 8.01256 8.20171 8.36349 9.05737 9.57461 9.77802 10.16720 11.21657 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016486 B = 0.002824 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.016899 B = 9911.407917 C =10671.581276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.070 4.070 3 C -0.115 4.115 4 C -0.123 4.123 5 C -0.118 4.118 6 C -0.098 4.098 7 C -0.113 4.113 8 C 0.144 3.856 9 N -0.687 5.687 10 C 0.507 3.493 11 O -0.503 6.503 12 C -0.137 4.137 13 C -0.122 4.122 14 C 0.147 3.853 15 N -0.568 5.568 16 C -0.253 4.253 17 H 0.081 0.919 18 C 0.000 4.000 19 N -0.901 5.901 20 Si 0.907 3.093 21 H -0.283 1.283 22 H -0.292 1.292 23 H -0.284 1.284 24 C 0.190 3.810 25 C 0.473 3.527 26 O -0.505 6.505 27 O -0.548 6.548 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.405 0.595 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.041 0.959 44 H 0.257 0.743 45 H 0.108 0.892 46 H 0.051 0.949 47 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.505 5.323 16.621 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.072 4.072 3 C -0.134 4.134 4 C -0.141 4.141 5 C -0.136 4.136 6 C -0.100 4.100 7 C -0.170 4.170 8 C 0.050 3.950 9 N -0.336 5.336 10 C 0.296 3.704 11 O -0.375 6.375 12 C -0.178 4.178 13 C -0.163 4.163 14 C 0.020 3.980 15 N -0.288 5.288 16 C -0.382 4.382 17 H 0.099 0.901 18 C -0.198 4.198 19 N -0.546 5.546 20 Si 0.737 3.263 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.210 1.210 24 C 0.061 3.939 25 C 0.312 3.688 26 O -0.390 6.390 27 O -0.358 6.358 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.241 0.759 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.126 0.874 46 H 0.069 0.931 47 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 11.478 5.583 15.797 20.309 hybrid contribution 0.341 0.116 -0.898 0.967 sum 11.819 5.699 14.899 19.853 Atomic orbital electron populations 1.20855 0.90720 1.01753 1.03329 1.19924 0.96524 0.91992 0.98807 1.20888 0.94166 0.97159 1.01190 1.21074 0.94175 0.97923 1.00970 1.20823 0.99508 0.91541 1.01764 1.19866 0.92179 0.96065 1.01931 1.20723 0.99889 0.94285 1.02072 1.17314 0.89824 0.85715 1.02124 1.43679 1.40041 1.17166 1.32713 1.21252 0.79426 0.89150 0.80613 1.90778 1.65722 1.47337 1.33663 1.21801 0.98820 0.94322 1.02845 1.22141 0.97080 1.01315 0.95733 1.20977 0.91765 0.95133 0.90090 1.44253 1.08444 1.66687 1.09394 1.19239 1.05898 1.26701 0.86320 0.90099 1.24744 1.00095 0.97444 0.97497 1.69837 1.28450 1.26128 1.30197 0.86269 0.77365 0.81441 0.81246 1.21012 1.21767 1.21047 1.20341 0.88952 0.86434 0.98197 1.25265 0.79708 0.90809 0.72986 1.90541 1.34514 1.71108 1.42792 1.84630 1.41605 1.26566 1.83032 0.89536 0.92273 0.92162 0.85906 0.86075 0.85984 0.91257 0.91420 0.91357 0.75863 0.89327 0.89461 0.90931 0.91173 0.93101 0.94110 0.93229 0.87377 0.93106 0.76661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 8.27 36.01 0.30 -1.22 16 2 C -0.07 -0.96 5.49 -104.43 -0.57 -1.53 16 3 C -0.12 -1.36 9.72 -39.61 -0.39 -1.75 16 4 C -0.12 -1.28 10.04 -39.55 -0.40 -1.67 16 5 C -0.12 -1.22 9.70 -39.61 -0.38 -1.60 16 6 C -0.10 -1.11 5.90 -104.44 -0.62 -1.73 16 7 C -0.11 -0.98 9.69 36.00 0.35 -0.63 16 8 C 0.14 1.87 5.80 -83.69 -0.49 1.39 16 9 N -0.69 -8.13 3.86 -9.86 -0.04 -8.17 16 10 C 0.51 7.77 6.02 -10.98 -0.07 7.71 16 11 O -0.50 -10.22 13.24 5.55 0.07 -10.14 16 12 C -0.14 -1.88 5.70 -27.88 -0.16 -2.04 16 13 C -0.12 -2.39 4.18 -26.73 -0.11 -2.50 16 14 C 0.15 2.83 5.71 -4.04 -0.02 2.81 16 15 N -0.57 -13.67 2.07 -174.61 -0.36 -14.03 16 16 C -0.25 -6.77 9.69 -15.06 -0.15 -6.92 16 17 H 0.08 2.12 7.95 -52.49 -0.42 1.70 16 18 C 0.00 0.00 4.85 -17.43 -0.08 -0.09 16 19 N -0.90 -25.81 8.98 55.49 0.50 -25.31 16 20 Si 0.91 21.69 29.63 -169.99 -5.04 16.65 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.19 4.43 5.59 -5.19 -0.03 4.40 16 25 C 0.47 11.60 6.33 36.01 0.23 11.83 16 26 O -0.50 -14.10 14.44 -18.75 -0.27 -14.37 16 27 O -0.55 -11.56 13.42 -39.25 -0.53 -12.09 16 28 H 0.09 1.44 7.10 -51.93 -0.37 1.07 16 29 H 0.06 0.82 6.31 -51.93 -0.33 0.49 16 30 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.63 7.46 -51.92 -0.39 0.24 16 36 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 37 H 0.41 3.36 8.72 -40.82 -0.36 3.00 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.64 6.35 -51.93 -0.33 1.31 16 41 H 0.07 1.66 8.10 -51.93 -0.42 1.24 16 42 H 0.05 0.92 8.05 -51.93 -0.42 0.50 16 43 H 0.04 0.67 7.87 -51.93 -0.41 0.27 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 45 H 0.11 2.71 6.42 -51.93 -0.33 2.38 16 46 H 0.05 1.00 7.88 -51.93 -0.41 0.59 16 47 H 0.38 6.56 9.10 45.56 0.41 6.98 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -35.70 384.05 -8.74 -44.44 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -6.27 Total: 10.80 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -2.59 Total: 6.45 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.10 Total: -47.51 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.72 Total: -36.61 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.04 Total: 16.65 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.70 -8.74 -44.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832965062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.876 kcal (2) G-P(sol) polarization free energy of solvation -35.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds