Wall clock time and date at job start Tue Mar 31 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38119 * 120.03220 * 2 1 4 4 C 1.38284 * 120.06646 * 179.72408 * 3 2 1 5 5 C 1.38289 * 120.14265 * 0.28265 * 4 3 2 6 6 C 1.38108 * 120.07116 * 359.94929 * 5 4 3 7 7 C 1.50695 * 120.03771 * 180.02562 * 6 5 4 8 8 C 1.38870 * 120.03915 * 180.21231 * 2 1 3 9 9 N 1.39929 * 120.07080 * 359.97438 * 8 2 1 10 10 C 1.34783 * 119.99556 * 53.67267 * 9 8 2 11 11 O 1.21287 * 120.00222 * 4.13964 * 10 9 8 12 12 C 1.50701 * 119.99460 * 184.13259 * 10 9 8 13 13 C 1.53006 * 109.46780 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46834 * 180.02562 * 13 12 10 15 15 N 1.46505 * 109.46787 * 179.97438 * 14 13 12 16 16 C 1.36940 * 120.00092 * 87.94840 * 15 14 13 17 17 H 1.08000 * 119.99960 * 9.61476 * 16 15 14 18 18 C 1.38809 * 119.99833 * 189.61688 * 16 15 14 19 19 N 1.31618 * 120.00124 * 26.00336 * 18 16 15 20 20 Si 1.86797 * 119.99859 * 206.00169 * 18 16 15 21 21 H 1.48503 * 109.47300 * 59.99935 * 20 18 16 22 22 H 1.48500 * 109.47464 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47088 * 300.00102 * 20 18 16 24 24 C 1.46499 * 120.00050 * 267.94470 * 15 14 13 25 25 C 1.50706 * 109.47005 * 89.99980 * 24 15 14 26 26 O 1.20826 * 119.99796 * 0.02562 * 25 24 15 27 27 O 1.34226 * 119.99674 * 180.02562 * 25 24 15 28 28 H 1.08999 * 109.47044 * 83.21337 * 1 2 3 29 29 H 1.09005 * 109.46681 * 203.21282 * 1 2 3 30 30 H 1.08994 * 109.47094 * 323.21391 * 1 2 3 31 31 H 1.07992 * 119.96804 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.92872 * 180.25536 * 4 3 2 33 33 H 1.07996 * 119.96500 * 179.97438 * 5 4 3 34 34 H 1.08991 * 109.47587 * 89.99979 * 7 6 5 35 35 H 1.09007 * 109.47298 * 210.00690 * 7 6 5 36 36 H 1.09002 * 109.47108 * 329.99993 * 7 6 5 37 37 H 0.96991 * 120.00045 * 233.68143 * 9 8 2 38 38 H 1.08995 * 109.47633 * 299.99799 * 12 10 9 39 39 H 1.09000 * 109.47130 * 60.00560 * 12 10 9 40 40 H 1.08993 * 109.46988 * 299.99792 * 13 12 10 41 41 H 1.09000 * 109.47165 * 60.00174 * 13 12 10 42 42 H 1.08993 * 109.47065 * 299.99624 * 14 13 12 43 43 H 1.09000 * 109.47201 * 60.00076 * 14 13 12 44 44 H 0.97003 * 120.00024 * 180.02562 * 19 18 16 45 45 H 1.08993 * 109.47353 * 210.00301 * 24 15 14 46 46 H 1.09003 * 109.47166 * 330.00576 * 24 15 14 47 47 H 0.96708 * 116.99701 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1958 0.0000 4 6 3.5811 1.1966 0.0058 5 6 4.2762 0.0011 0.0056 6 6 3.5909 -1.1979 0.0008 7 6 4.3492 -2.5002 0.0013 8 6 2.2022 -1.2022 -0.0045 9 7 1.5049 -2.4153 -0.0084 10 6 0.5692 -2.6516 -0.9493 11 8 0.3841 -1.8456 -1.8365 12 6 -0.2469 -3.9176 -0.8990 13 6 -1.2280 -3.9388 -2.0729 14 6 -2.0570 -5.2237 -2.0215 15 7 -2.9968 -5.2438 -3.1452 16 6 -2.6110 -5.7650 -4.3514 17 1 -1.6763 -6.2995 -4.4345 18 6 -3.4214 -5.6062 -5.4671 19 7 -4.2494 -4.5857 -5.5393 20 14 -3.3366 -6.8409 -6.8663 21 1 -3.6877 -8.1910 -6.3570 22 1 -4.2941 -6.4487 -7.9314 23 1 -1.9600 -6.8644 -7.4230 24 6 -4.3494 -4.7062 -2.9785 25 6 -4.3540 -3.2403 -3.3282 26 8 -3.3324 -2.7002 -3.6810 27 8 -5.4931 -2.5348 -3.2478 28 1 -0.3633 0.1214 -1.0205 29 1 -0.3633 -0.9445 0.4051 30 1 -0.3633 0.8230 0.6154 31 1 1.6583 2.1310 0.0004 32 1 4.1194 2.1329 0.0099 33 1 5.3562 0.0051 0.0097 34 1 4.5281 -2.8161 1.0289 35 1 3.7649 -3.2611 -0.5163 36 1 5.3031 -2.3654 -0.5087 37 1 1.6948 -3.0860 0.6660 38 1 0.4161 -4.7802 -0.9646 39 1 -0.8011 -3.9556 0.0388 40 1 -1.8911 -3.0762 -2.0078 41 1 -0.6735 -3.9009 -3.0106 42 1 -1.3942 -6.0865 -2.0864 43 1 -2.6115 -5.2611 -1.0839 44 1 -4.8160 -4.4750 -6.3188 45 1 -5.0358 -5.2389 -3.6366 46 1 -4.6661 -4.8337 -1.9433 47 1 -5.4466 -1.5978 -3.4826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832965062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:26 Heat of formation + Delta-G solvation = -105.364746 kcal Electronic energy + Delta-G solvation = -29252.087380 eV Core-core repulsion = 25206.490599 eV Total energy + Delta-G solvation = -4045.596781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.75433 -40.49598 -39.65484 -37.76971 -36.18159 -35.79180 -34.75258 -34.45136 -32.76680 -31.64137 -29.41226 -28.47697 -27.57994 -27.44020 -24.96143 -23.22821 -22.23408 -21.99131 -21.57410 -21.04080 -18.83446 -18.56379 -18.39137 -17.95864 -17.22788 -17.01851 -16.82568 -16.25079 -16.16512 -15.90577 -15.43789 -15.31564 -14.92359 -14.89233 -14.60613 -14.42992 -14.03748 -13.88754 -13.80265 -13.60178 -13.33064 -13.14338 -12.87298 -12.80808 -12.65605 -12.51083 -12.40781 -12.32172 -12.18038 -12.17371 -12.11540 -11.91177 -11.69306 -11.31877 -11.07440 -10.93476 -10.76022 -10.48899 -9.51380 -9.23037 -9.01481 -7.95551 -5.21035 0.30459 0.39990 1.48803 1.50439 1.57792 1.65910 2.13199 2.15484 2.51727 2.77420 2.85643 3.26947 3.59148 3.78225 3.84390 3.90881 4.07934 4.22031 4.28505 4.33949 4.43276 4.52699 4.56558 4.61520 4.66056 4.72423 4.79457 4.80340 4.86654 4.89969 4.93428 4.96320 5.13851 5.19327 5.28030 5.29269 5.39127 5.43916 5.47895 5.59709 5.63251 5.65189 5.77079 6.11226 6.23192 6.24201 6.48992 7.05420 7.28563 7.67863 7.88530 8.19431 9.14347 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016486 B = 0.002824 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.016899 B = 9911.407917 C =10671.581276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.099 4.099 3 C -0.129 4.129 4 C -0.122 4.122 5 C -0.121 4.121 6 C -0.104 4.104 7 C -0.111 4.111 8 C 0.117 3.883 9 N -0.665 5.665 10 C 0.506 3.494 11 O -0.564 6.564 12 C -0.125 4.125 13 C -0.105 4.105 14 C 0.142 3.858 15 N -0.583 5.583 16 C -0.256 4.256 17 H 0.081 0.919 18 C -0.055 4.055 19 N -0.929 5.929 20 Si 0.968 3.032 21 H -0.270 1.270 22 H -0.301 1.301 23 H -0.287 1.287 24 C 0.188 3.812 25 C 0.475 3.525 26 O -0.547 6.547 27 O -0.539 6.539 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.134 0.866 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.424 0.576 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.035 0.965 41 H 0.015 0.985 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.248 0.752 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.294 4.185 19.077 23.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.101 4.101 3 C -0.148 4.148 4 C -0.140 4.140 5 C -0.139 4.139 6 C -0.106 4.106 7 C -0.167 4.167 8 C 0.023 3.977 9 N -0.315 5.315 10 C 0.296 3.704 11 O -0.441 6.441 12 C -0.165 4.165 13 C -0.146 4.146 14 C 0.017 3.983 15 N -0.303 5.303 16 C -0.386 4.386 17 H 0.099 0.901 18 C -0.249 4.249 19 N -0.576 5.576 20 Si 0.797 3.203 21 H -0.195 1.195 22 H -0.228 1.228 23 H -0.213 1.213 24 C 0.059 3.941 25 C 0.316 3.684 26 O -0.436 6.436 27 O -0.351 6.351 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.152 0.848 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.264 0.736 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.054 0.946 41 H 0.034 0.966 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.057 0.943 45 H 0.106 0.894 46 H 0.111 0.889 47 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 13.287 4.415 18.333 23.068 hybrid contribution -0.151 0.571 -1.583 1.690 sum 13.136 4.987 16.750 21.863 Atomic orbital electron populations 1.20703 0.91670 1.02183 1.01203 1.20099 0.96242 0.93276 1.00462 1.21144 0.95211 0.97080 1.01357 1.21451 0.93668 0.99392 0.99505 1.21242 1.01035 0.91081 1.00529 1.20230 0.91592 0.97804 1.01003 1.20777 0.99769 0.92608 1.03595 1.17583 0.90855 0.85696 1.03523 1.43382 1.38683 1.17355 1.32043 1.21518 0.79698 0.88937 0.80265 1.90773 1.67673 1.49308 1.36324 1.21708 0.98308 0.94720 1.01797 1.21781 0.97097 1.00033 0.95664 1.21251 0.91741 0.95206 0.90078 1.44500 1.09583 1.66614 1.09589 1.19553 1.05528 1.26027 0.87507 0.90094 1.25458 1.00603 0.98889 0.99950 1.69998 1.29606 1.27621 1.30395 0.85313 0.76631 0.79898 0.78419 1.19528 1.22754 1.21322 1.20414 0.88574 0.85175 0.99968 1.25564 0.79492 0.91463 0.71864 1.90541 1.36102 1.72125 1.44795 1.84561 1.40051 1.27910 1.82531 0.93354 0.92763 0.90361 0.84804 0.83314 0.83132 0.88919 0.92227 0.90259 0.73632 0.85972 0.85586 0.94641 0.96603 0.91380 0.90295 0.94299 0.89416 0.88908 0.74711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.93 8.27 71.24 0.59 -2.35 16 2 C -0.10 -2.72 5.49 -19.74 -0.11 -2.83 16 3 C -0.13 -2.99 9.72 22.25 0.22 -2.78 16 4 C -0.12 -2.30 10.04 22.29 0.22 -2.07 16 5 C -0.12 -2.19 9.70 22.25 0.22 -1.97 16 6 C -0.10 -2.16 5.90 -19.74 -0.12 -2.28 16 7 C -0.11 -1.61 9.69 71.23 0.69 -0.92 16 8 C 0.12 2.97 5.80 38.15 0.22 3.19 16 9 N -0.67 -15.06 3.86 -303.49 -1.17 -16.23 16 10 C 0.51 15.54 6.02 87.66 0.53 16.07 16 11 O -0.56 -24.26 13.24 -3.05 -0.04 -24.30 16 12 C -0.13 -3.22 5.70 29.85 0.17 -3.05 16 13 C -0.11 -4.16 4.18 30.60 0.13 -4.03 16 14 C 0.14 5.26 5.71 86.38 0.49 5.75 16 15 N -0.58 -27.91 2.07 -706.33 -1.47 -29.38 16 16 C -0.26 -13.84 9.69 84.03 0.81 -13.03 16 17 H 0.08 4.26 7.95 -2.91 -0.02 4.23 16 18 C -0.05 -3.04 4.85 84.86 0.41 -2.63 16 19 N -0.93 -54.64 8.98 21.65 0.19 -54.44 16 20 Si 0.97 45.35 29.63 68.60 2.03 47.39 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 C 0.19 8.70 5.59 85.64 0.48 9.17 16 25 C 0.48 23.67 6.33 71.24 0.45 24.12 16 26 O -0.55 -31.82 14.44 21.96 0.32 -31.50 16 27 O -0.54 -22.79 13.42 -51.38 -0.69 -23.48 16 28 H 0.05 1.76 7.10 -2.39 -0.02 1.75 16 29 H 0.05 1.55 6.31 -2.38 -0.02 1.54 16 30 H 0.08 1.85 8.13 -2.39 -0.02 1.83 16 31 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 33 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 0.97 7.46 -2.38 -0.02 0.95 16 36 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 37 H 0.42 6.01 8.72 -92.71 -0.81 5.20 16 38 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.03 1.65 6.35 -2.39 -0.02 1.64 16 41 H 0.01 0.76 8.10 -2.39 -0.02 0.74 16 42 H 0.07 2.28 8.05 -2.39 -0.02 2.26 16 43 H 0.08 2.33 7.87 -2.39 -0.02 2.31 16 44 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 45 H 0.09 4.44 6.42 -2.39 -0.02 4.42 16 46 H 0.09 3.43 7.88 -2.39 -0.02 3.41 16 47 H 0.40 13.79 9.10 -74.05 -0.67 13.12 16 Total: -1.00 -83.34 384.05 4.10 -79.24 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: -0.48 Total: 32.34 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 5.41 Total: 20.36 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -2.44 Total: -100.05 kcal Atomic # 8 Polarization: -78.86 SS G_CDS: -0.41 Total: -79.28 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.39 kcal Total: -83.34 4.10 -79.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832965062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.127 kcal (2) G-P(sol) polarization free energy of solvation -83.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds