Wall clock time and date at job start Tue Mar 31 2020 18:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 117.00160 * 2 1 4 4 O 1.20824 * 120.00030 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99968 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47000 * 180.02562 * 5 3 2 7 7 N 1.46498 * 109.47227 * 180.02562 * 6 5 3 8 8 C 1.37102 * 120.00028 * 262.42285 * 7 6 5 9 9 H 1.08004 * 119.99786 * 141.56490 * 8 7 6 10 10 C 1.38954 * 119.99880 * 321.56651 * 8 7 6 11 11 N 1.31408 * 120.00056 * 340.22202 * 10 8 7 12 12 Si 1.86797 * 119.99862 * 160.22538 * 10 8 7 13 13 H 1.48504 * 109.47374 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47309 * 119.99651 * 12 10 8 15 15 H 1.48501 * 109.46827 * 240.00093 * 12 10 8 16 16 C 1.34773 * 120.00204 * 82.42540 * 7 6 5 17 17 O 1.21291 * 119.99877 * 359.97438 * 16 7 6 18 18 C 1.50698 * 120.00061 * 180.02562 * 16 7 6 19 19 N 1.46904 * 109.47325 * 179.97438 * 18 16 7 20 20 C 1.39666 * 111.00207 * 179.67491 * 19 18 16 21 21 C 1.38921 * 120.07632 * 92.98510 * 20 19 18 22 22 C 1.50698 * 120.03396 * 359.97438 * 21 20 19 23 23 C 1.38104 * 119.92195 * 180.27173 * 21 20 19 24 24 C 1.38276 * 120.07631 * 359.45323 * 23 21 20 25 25 C 1.38283 * 120.15288 * 0.29226 * 24 23 21 26 26 C 1.38109 * 120.07282 * 359.97438 * 25 24 23 27 27 C 1.50700 * 120.03699 * 180.02562 * 26 25 24 28 28 H 1.08997 * 109.46382 * 299.99653 * 1 2 3 29 29 H 1.08999 * 109.47357 * 59.99378 * 1 2 3 30 30 H 1.08996 * 109.47029 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47173 * 60.00952 * 5 3 2 32 32 H 1.09000 * 109.47366 * 300.00370 * 5 3 2 33 33 H 1.09002 * 109.47468 * 59.99876 * 6 5 3 34 34 H 1.09005 * 109.47684 * 299.99983 * 6 5 3 35 35 H 0.96998 * 119.99947 * 179.97438 * 11 10 8 36 36 H 1.09002 * 109.47425 * 59.99789 * 18 16 7 37 37 H 1.08998 * 109.47530 * 299.99464 * 18 16 7 38 38 H 1.00904 * 110.99872 * 55.71873 * 19 18 16 39 39 H 1.08996 * 109.47363 * 273.88161 * 22 21 20 40 40 H 1.09000 * 109.47174 * 33.88826 * 22 21 20 41 41 H 1.09008 * 109.46697 * 153.88457 * 22 21 20 42 42 H 1.08005 * 119.95690 * 179.72615 * 23 21 20 43 43 H 1.08001 * 119.92602 * 180.27670 * 24 23 21 44 44 H 1.08005 * 119.96339 * 179.97438 * 25 24 23 45 45 H 1.09005 * 109.47439 * 89.99558 * 27 26 25 46 46 H 1.08993 * 109.47323 * 210.00171 * 27 26 25 47 47 H 1.09005 * 109.47237 * 329.99744 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 7 5.4632 2.8187 -0.0010 8 6 6.1406 3.0100 1.1755 9 1 7.0734 2.4949 1.3514 10 6 5.6268 3.8665 2.1416 11 7 4.7364 4.7738 1.8088 12 14 6.2020 3.7281 3.9135 13 1 7.2005 2.6347 4.0259 14 1 6.8218 5.0102 4.3343 15 1 5.0404 3.4289 4.7890 16 6 6.1432 2.7012 -1.1586 17 8 5.5440 2.5315 -2.1994 18 6 7.6482 2.7795 -1.1597 19 7 8.1457 2.6234 -2.5331 20 6 9.5398 2.6984 -2.5721 21 6 10.3018 1.5394 -2.4937 22 6 9.6251 0.1990 -2.3659 23 6 11.6802 1.6178 -2.5269 24 6 12.3017 2.8469 -2.6493 25 6 11.5462 4.0020 -2.7328 26 6 10.1674 3.9315 -2.6948 27 6 9.3448 5.1908 -2.7865 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9557 0.7810 -0.8909 32 1 3.9565 0.7804 0.8891 33 1 3.6109 3.2356 0.8906 34 1 3.6101 3.2368 -0.8893 35 1 4.3775 5.3714 2.4833 36 1 8.0539 1.9844 -0.5342 37 1 7.9620 3.7466 -0.7671 38 1 7.7295 3.3064 -3.1483 39 1 9.4242 -0.0079 -1.3148 40 1 8.6864 0.2116 -2.9198 41 1 10.2755 -0.5764 -2.7710 42 1 12.2733 0.7175 -2.4615 43 1 13.3797 2.9049 -2.6795 44 1 12.0348 4.9605 -2.8280 45 1 9.1228 5.4046 -3.8320 46 1 8.4130 5.0569 -2.2372 47 1 9.9037 6.0220 -2.3564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:23 Heat of formation + Delta-G solvation = -94.065225 kcal Electronic energy + Delta-G solvation = -29113.036595 eV Core-core repulsion = 25067.929797 eV Total energy + Delta-G solvation = -4045.106797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.07485 -39.85448 -38.52469 -36.21935 -35.38817 -34.61222 -33.35628 -32.05359 -30.97694 -30.21421 -27.84099 -27.22015 -26.46538 -25.31093 -25.07024 -22.90315 -20.96387 -20.55697 -20.24472 -19.19903 -17.54148 -17.15592 -16.42889 -16.25382 -16.16484 -15.93265 -15.58438 -14.82859 -14.74931 -14.48146 -14.14997 -13.85786 -13.62834 -13.48375 -13.25456 -12.97828 -12.82823 -12.77619 -12.51711 -12.38915 -12.31961 -12.14461 -11.84456 -11.65266 -11.43246 -11.33957 -11.31605 -11.09072 -10.96669 -10.86730 -10.74976 -10.54773 -10.43721 -10.12115 -10.01436 -9.21120 -8.94153 -8.41443 -8.38536 -7.87613 -7.63365 -6.47693 -4.20828 1.48194 1.53708 2.66241 3.03191 3.06215 3.17245 3.19807 3.78808 3.83807 4.03422 4.35610 4.85029 4.88800 4.96974 4.99741 5.10700 5.23795 5.30353 5.31094 5.37390 5.56022 5.62440 5.63642 5.71239 5.75545 5.80512 5.86697 5.93092 5.95407 5.98271 6.09388 6.12649 6.21679 6.28109 6.34255 6.49711 6.59881 6.64579 6.72084 6.79620 6.83086 7.01173 7.25274 7.34268 7.48218 7.79340 7.86121 8.17038 8.25528 8.97511 9.38694 9.81632 10.54870 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010997 B = 0.003452 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.539335 B = 8108.743680 C = 9450.490992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.506 6.506 5 C -0.126 4.126 6 C 0.136 3.864 7 N -0.438 5.438 8 C -0.351 4.351 9 H 0.091 0.909 10 C 0.048 3.952 11 N -0.851 5.851 12 Si 0.911 3.089 13 H -0.266 1.266 14 H -0.280 1.280 15 H -0.278 1.278 16 C 0.474 3.526 17 O -0.590 6.590 18 C 0.068 3.932 19 N -0.631 5.631 20 C 0.106 3.894 21 C -0.069 4.069 22 C -0.107 4.107 23 C -0.122 4.122 24 C -0.129 4.129 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.121 4.121 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.271 0.729 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.357 0.643 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.505 -5.650 -3.743 9.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.309 3.691 4 O -0.393 6.393 5 C -0.165 4.165 6 C 0.012 3.988 7 N -0.157 5.157 8 C -0.479 4.479 9 H 0.108 0.892 10 C -0.160 4.160 11 N -0.486 5.486 12 Si 0.737 3.263 13 H -0.190 1.190 14 H -0.206 1.206 15 H -0.204 1.204 16 C 0.262 3.738 17 O -0.475 6.475 18 C -0.061 4.061 19 N -0.261 5.261 20 C 0.009 3.991 21 C -0.070 4.070 22 C -0.163 4.163 23 C -0.140 4.140 24 C -0.148 4.148 25 C -0.136 4.136 26 C -0.122 4.122 27 C -0.178 4.178 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.179 0.821 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.760 -5.943 -4.114 9.242 hybrid contribution 0.222 1.052 1.211 1.620 sum 5.982 -4.891 -2.903 8.254 Atomic orbital electron populations 1.23166 0.77382 1.03026 1.02323 1.86541 1.22735 1.34420 1.84646 1.24080 0.92399 0.80882 0.71698 1.90651 1.67285 1.36228 1.45105 1.21928 0.85866 1.03421 1.05318 1.21059 0.82171 0.90654 1.04902 1.43349 1.04319 1.62433 1.05616 1.19434 1.08594 1.26436 0.93435 0.89154 1.25415 0.96664 0.93417 1.00484 1.69958 1.28701 1.15493 1.34438 0.86135 0.78940 0.78545 0.82707 1.19002 1.20606 1.20385 1.20306 0.88980 0.80798 0.83678 1.90553 1.70335 1.54684 1.31894 1.21585 0.94266 1.02190 0.88024 1.57500 1.01978 1.57123 1.09450 1.18548 0.89341 0.91395 0.99838 1.19784 0.92819 0.94993 0.99452 1.20665 1.01171 0.92176 1.02316 1.20913 0.93721 0.97597 1.01785 1.21001 0.99348 0.92631 1.01794 1.20838 0.92968 0.98221 1.01571 1.20537 0.94629 0.95066 1.01919 1.20824 0.99934 0.94725 1.02332 0.92184 0.92177 0.88620 0.88087 0.87887 0.87230 0.91888 0.91818 0.89145 0.91935 0.82056 0.91625 0.89943 0.92620 0.86292 0.86542 0.86574 0.91153 0.91174 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.98 10.57 -39.25 -0.41 -6.40 16 3 C 0.47 8.94 7.96 36.00 0.29 9.23 16 4 O -0.51 -10.99 15.73 -18.75 -0.29 -11.29 16 5 C -0.13 -2.49 6.07 -27.88 -0.17 -2.66 16 6 C 0.14 3.20 4.12 -4.04 -0.02 3.18 16 7 N -0.44 -10.38 2.53 -114.81 -0.29 -10.67 16 8 C -0.35 -8.36 8.59 -14.93 -0.13 -8.48 16 9 H 0.09 2.05 7.11 -52.48 -0.37 1.68 16 10 C 0.05 1.16 4.91 -17.47 -0.09 1.07 16 11 N -0.85 -21.98 11.55 55.50 0.64 -21.34 16 12 Si 0.91 18.72 29.60 -169.99 -5.03 13.69 16 13 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 14 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 15 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 16 C 0.47 10.83 7.60 -10.99 -0.08 10.75 16 17 O -0.59 -14.64 15.83 5.55 0.09 -14.55 16 18 C 0.07 1.32 4.40 -4.97 -0.02 1.30 16 19 N -0.63 -11.06 4.84 -59.53 -0.29 -11.34 16 20 C 0.11 1.67 5.25 -83.79 -0.44 1.23 16 21 C -0.07 -1.00 5.90 -104.42 -0.62 -1.62 16 22 C -0.11 -1.43 9.72 36.00 0.35 -1.08 16 23 C -0.12 -1.53 9.68 -39.62 -0.38 -1.91 16 24 C -0.13 -1.55 10.04 -39.55 -0.40 -1.95 16 25 C -0.12 -1.50 9.70 -39.61 -0.38 -1.88 16 26 C -0.12 -1.72 5.90 -104.42 -0.62 -2.34 16 27 C -0.12 -1.63 9.26 36.01 0.33 -1.29 16 28 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 1.97 8.06 -51.93 -0.42 1.55 16 32 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 33 H 0.11 2.80 5.61 -51.93 -0.29 2.51 16 34 H 0.06 1.60 7.62 -51.93 -0.40 1.20 16 35 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 36 H 0.09 1.71 7.67 -51.93 -0.40 1.31 16 37 H 0.06 1.24 6.96 -51.93 -0.36 0.88 16 38 H 0.36 6.39 7.08 -39.29 -0.28 6.12 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.24 7.59 -51.93 -0.39 0.85 16 41 H 0.05 0.62 8.06 -51.92 -0.42 0.20 16 42 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 43 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.07 1.07 5.67 -51.93 -0.29 0.78 16 47 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 LS Contribution 392.44 15.07 5.91 5.91 Total: -1.00 -29.19 392.44 -7.96 -37.15 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -6.98 Total: 13.78 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -1.30 Total: 5.05 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.06 Total: -43.35 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.62 Total: -32.24 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.19 -7.96 -37.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.916 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds