Wall clock time and date at job start Tue Mar 31 2020 18:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51262 * 120.84941 * 2 1 4 4 C 1.53234 * 108.53917 * 128.92764 * 3 2 1 5 5 C 1.52956 * 109.40419 * 54.62280 * 4 3 2 6 6 C 1.50706 * 109.41152 * 176.29989 * 5 4 3 7 7 O 1.20819 * 120.00147 * 120.35042 * 6 5 4 8 8 O 1.34232 * 119.99649 * 300.34967 * 6 5 4 9 9 C 1.45196 * 116.99567 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47042 * 180.02562 * 9 8 6 11 11 O 1.21288 * 119.99870 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00211 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00234 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.46708 * 89.99952 * 13 12 10 15 15 H 1.08000 * 120.00005 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00016 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99894 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99985 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47627 * 59.99789 * 18 16 14 20 20 H 1.48505 * 109.46865 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47198 * 299.99543 * 18 16 14 22 22 C 1.46501 * 120.00153 * 0.02562 * 12 10 9 23 23 C 1.52994 * 109.47577 * 89.99532 * 22 12 10 24 24 C 1.47203 * 109.47279 * 180.02562 * 23 22 12 25 25 N 9.39647 * 139.07612 * 291.94326 * 4 1 2 26 26 C 1.52960 * 109.81835 * 296.40343 * 5 4 3 27 27 C 1.51276 * 120.84804 * 180.27541 * 2 1 3 28 28 H 1.08005 * 119.99835 * 179.72030 * 1 2 3 29 29 H 1.07992 * 119.99731 * 359.72145 * 1 2 3 30 30 H 1.09007 * 109.62335 * 248.63908 * 3 2 1 31 31 H 1.08996 * 109.62750 * 9.20445 * 3 2 1 32 32 H 1.09002 * 109.47375 * 294.64440 * 4 3 2 33 33 H 1.08999 * 109.48358 * 174.60290 * 4 3 2 34 34 H 1.09002 * 109.41534 * 56.51334 * 5 4 3 35 35 H 1.08999 * 109.47860 * 300.00261 * 9 8 6 36 36 H 1.09002 * 109.46899 * 60.00705 * 9 8 6 37 37 H 1.08996 * 109.47480 * 210.00034 * 13 12 10 38 38 H 1.08998 * 109.46858 * 330.00531 * 13 12 10 39 39 H 0.96996 * 120.00152 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.46768 * 209.99934 * 22 12 10 41 41 H 1.09007 * 109.46686 * 329.99659 * 22 12 10 42 42 H 1.09004 * 109.47446 * 300.00343 * 23 22 12 43 43 H 1.08997 * 109.47082 * 60.00200 * 23 22 12 44 44 H 1.09005 * 109.48090 * 303.61775 * 26 5 4 45 45 H 1.08998 * 109.49622 * 183.58621 * 26 5 4 46 46 H 1.09001 * 109.62477 * 350.79006 * 27 2 1 47 47 H 1.08996 * 109.62421 * 111.17059 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1192 1.2488 1.1302 5 6 3.9848 -0.0024 0.9725 6 6 5.0588 -0.0050 2.0297 7 8 5.1243 -0.9146 2.8222 8 8 5.9427 1.0034 2.0908 9 6 6.9492 0.9352 3.1351 10 6 7.8453 2.1438 3.0488 11 8 7.6541 2.9805 2.1918 12 7 8.8591 2.2949 3.9239 13 6 9.7306 3.4696 3.8396 14 6 9.1646 4.5769 4.6908 15 1 8.2478 4.4211 5.2399 16 6 9.8173 5.7889 4.7685 17 7 10.9334 5.9788 4.0995 18 14 9.1161 7.1613 5.8242 19 1 9.0334 6.7073 7.2356 20 1 9.9987 8.3524 5.7377 21 1 7.7584 7.5156 5.3378 22 6 9.0904 1.2840 4.9587 23 6 10.0490 0.2178 4.4250 24 6 10.2809 -0.7982 5.4646 25 7 10.4593 -1.5818 6.2687 26 6 3.1191 -1.2543 1.1242 27 6 2.0857 -1.2987 -0.0062 28 1 -0.5400 -0.9354 -0.0046 29 1 -0.5399 0.9352 0.0045 30 1 2.5945 1.4211 -0.9562 31 1 1.4034 2.1326 0.1642 32 1 2.6057 1.2169 2.0911 33 1 3.7509 2.1359 1.0846 34 1 4.4488 -0.0001 -0.0138 35 1 6.4611 0.9141 4.1095 36 1 7.5446 0.0312 3.0073 37 1 10.7268 3.2093 4.1973 38 1 9.7919 3.8028 2.8037 39 1 11.3928 6.8313 4.1544 40 1 9.5269 1.7576 5.8381 41 1 8.1429 0.8180 5.2295 42 1 9.6126 -0.2558 3.5456 43 1 10.9964 0.6838 4.1542 44 1 2.6057 -1.2270 2.0854 45 1 3.7506 -2.1414 1.0745 46 1 1.4034 -2.1335 0.1541 47 1 2.5918 -1.4183 -0.9642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885653744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:14 Heat of formation + Delta-G solvation = -109.747469 kcal Electronic energy + Delta-G solvation = -28355.653872 eV Core-core repulsion = 24309.867042 eV Total energy + Delta-G solvation = -4045.786830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.92351 -40.70649 -39.18015 -38.04905 -37.47525 -36.70188 -34.88359 -33.94711 -32.23395 -32.02708 -30.80247 -28.69792 -27.59388 -25.37767 -24.70738 -23.93419 -23.35569 -21.33946 -20.29751 -19.34624 -18.96857 -18.81556 -18.38250 -17.94022 -17.58391 -17.44453 -16.85549 -16.22435 -15.97390 -15.72724 -15.71880 -15.48407 -14.94467 -14.67976 -14.62302 -14.40567 -14.33807 -14.04060 -13.78172 -13.60690 -13.58500 -13.44360 -13.28309 -13.18520 -12.95723 -12.74557 -12.59905 -12.51843 -12.42353 -12.18257 -12.05163 -11.98341 -11.76651 -11.69603 -11.64251 -11.34490 -11.12311 -10.68828 -10.57646 -9.88046 -9.57928 -8.18036 -6.29899 1.09140 1.27074 1.41584 1.43309 1.44503 1.50982 1.58419 1.78979 1.81582 2.32378 2.45911 3.03861 3.14652 3.51035 3.56514 3.65057 3.73612 3.91408 3.99024 4.05845 4.08859 4.12444 4.13603 4.25526 4.35385 4.46778 4.51833 4.60277 4.79176 4.80852 4.81467 5.00907 5.02377 5.06196 5.07146 5.13452 5.16584 5.19691 5.29794 5.31915 5.36103 5.56479 5.81082 5.83559 6.02666 6.11474 6.53455 6.58983 6.67770 6.78829 7.25749 7.42609 8.88790 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010259 B = 0.002858 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.570234 B = 9794.339622 C =11958.716948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 C -0.082 4.082 4 C -0.108 4.108 5 C -0.074 4.074 6 C 0.466 3.534 7 O -0.528 6.528 8 O -0.345 6.345 9 C 0.052 3.948 10 C 0.507 3.493 11 O -0.567 6.567 12 N -0.590 5.590 13 C 0.260 3.740 14 C -0.543 4.543 15 H 0.054 0.946 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.956 3.044 19 H -0.264 1.264 20 H -0.282 1.282 21 H -0.279 1.279 22 C 0.108 3.892 23 C -0.039 4.039 24 C 0.245 3.755 25 N -0.488 5.488 26 C -0.095 4.095 27 C -0.080 4.080 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.042 0.958 38 H 0.008 0.992 39 H 0.266 0.734 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.128 0.872 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.783 -14.866 -7.943 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.135 4.135 3 C -0.119 4.119 4 C -0.146 4.146 5 C -0.093 4.093 6 C 0.310 3.690 7 O -0.417 6.417 8 O -0.261 6.261 9 C -0.025 4.025 10 C 0.294 3.706 11 O -0.445 6.445 12 N -0.322 5.322 13 C 0.140 3.860 14 C -0.582 4.582 15 H 0.072 0.928 16 C -0.186 4.186 17 N -0.564 5.564 18 Si 0.782 3.218 19 H -0.189 1.189 20 H -0.208 1.208 21 H -0.205 1.205 22 C -0.017 4.017 23 C -0.080 4.080 24 C -0.073 4.073 25 N -0.166 5.166 26 C -0.133 4.133 27 C -0.117 4.117 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.146 0.854 35 H 0.131 0.869 36 H 0.146 0.854 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.121 0.879 42 H 0.152 0.848 43 H 0.146 0.854 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.103 0.897 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.407 -15.710 -6.962 23.079 hybrid contribution 0.117 1.392 0.498 1.483 sum -15.290 -14.318 -6.464 21.922 Atomic orbital electron populations 1.23800 0.94944 1.02546 1.01978 1.22089 0.95445 0.95930 1.00012 1.20807 0.97024 0.95417 0.98612 1.21530 0.97155 0.95878 1.00046 1.21230 0.91922 0.99094 0.97062 1.24447 0.81209 0.78349 0.85014 1.90643 1.72710 1.36655 1.41671 1.86589 1.40181 1.47224 1.52084 1.22934 0.89761 0.97916 0.91888 1.20456 0.81527 0.87126 0.81516 1.90713 1.71142 1.45399 1.37282 1.47997 1.30168 1.23261 1.30750 1.18901 0.89103 0.81773 0.96233 1.21712 1.09145 0.98803 1.28539 0.92773 1.25690 0.95237 1.00682 0.96996 1.70003 1.17892 1.25688 1.42789 0.85635 0.78043 0.78603 0.79544 1.18870 1.20762 1.20489 1.21624 1.00687 0.88228 0.91127 1.19848 1.04259 0.90639 0.93275 1.29161 0.91661 0.93083 0.93362 1.81293 1.10682 1.12778 1.11851 1.21422 0.96732 0.95387 0.99710 1.20822 0.97082 0.95097 0.98719 0.87590 0.88093 0.89576 0.90242 0.91811 0.90929 0.85442 0.86853 0.85421 0.93966 0.97343 0.92504 0.88852 0.87948 0.84835 0.85442 0.91968 0.90508 0.89704 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.36 13.99 67.78 0.95 -1.41 16 2 C -0.13 -1.77 5.35 -16.13 -0.09 -1.85 16 3 C -0.08 -1.13 6.03 30.10 0.18 -0.95 16 4 C -0.11 -1.91 5.17 30.66 0.16 -1.76 16 5 C -0.07 -1.31 2.52 -11.57 -0.03 -1.34 16 6 C 0.47 11.28 7.25 71.24 0.52 11.79 16 7 O -0.53 -14.33 15.69 21.99 0.34 -13.99 16 8 O -0.35 -9.88 9.57 -45.08 -0.43 -10.32 16 9 C 0.05 1.36 4.50 71.24 0.32 1.68 16 10 C 0.51 18.40 7.75 87.66 0.68 19.07 16 11 O -0.57 -26.95 16.08 15.75 0.25 -26.70 16 12 N -0.59 -20.63 2.46 -826.15 -2.03 -22.66 16 13 C 0.26 12.18 5.16 85.63 0.44 12.62 16 14 C -0.54 -28.70 9.39 25.60 0.24 -28.46 16 15 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 16 C 0.01 0.73 5.46 84.65 0.46 1.19 16 17 N -0.92 -52.60 13.29 21.45 0.28 -52.31 16 18 Si 0.96 42.96 29.54 68.60 2.03 44.99 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 C 0.11 2.56 5.17 86.38 0.45 3.01 16 23 C -0.04 -0.70 6.03 28.79 0.17 -0.52 16 24 C 0.24 5.38 15.44 89.43 1.38 6.76 16 25 N -0.49 -13.79 18.54 20.02 0.37 -13.42 16 26 C -0.09 -1.44 4.54 30.66 0.14 -1.30 16 27 C -0.08 -0.92 6.03 30.11 0.18 -0.74 16 28 H 0.11 1.06 7.92 -2.91 -0.02 1.04 16 29 H 0.10 1.12 7.92 -2.91 -0.02 1.10 16 30 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.08 1.04 7.89 -2.39 -0.02 1.02 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.50 8.02 -2.39 -0.02 1.48 16 34 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.11 2.62 7.40 -2.39 -0.02 2.60 16 36 H 0.13 2.49 7.18 -2.39 -0.02 2.48 16 37 H 0.04 1.93 8.07 -2.39 -0.02 1.91 16 38 H 0.01 0.46 7.42 -2.39 -0.02 0.45 16 39 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 40 H 0.09 2.40 8.07 -2.39 -0.02 2.38 16 41 H 0.10 1.92 6.44 -2.38 -0.02 1.91 16 42 H 0.13 1.71 7.22 -2.38 -0.02 1.70 16 43 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.08 1.17 8.00 -2.39 -0.02 1.15 16 46 H 0.08 0.81 7.89 -2.39 -0.02 0.79 16 47 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -74.14 400.66 7.94 -66.20 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.97 Total: 10.39 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 6.15 Total: 17.81 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -1.37 Total: -88.39 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: 0.17 Total: -51.00 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -74.14 7.94 -66.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885653744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.547 kcal (2) G-P(sol) polarization free energy of solvation -74.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds