Wall clock time and date at job start Tue Mar 31 2020 18:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35907 * 117.00509 * 2 1 4 4 C 1.38853 * 119.97832 * 359.97438 * 3 2 1 5 5 C 1.38245 * 120.23653 * 180.02562 * 4 3 2 6 6 C 1.38013 * 120.20564 * 0.02562 * 5 4 3 7 7 C 1.39559 * 119.96510 * 359.97438 * 6 5 4 8 8 C 1.47860 * 120.11632 * 179.97438 * 7 6 5 9 9 O 1.21550 * 119.99725 * 173.76347 * 8 7 6 10 10 N 1.34769 * 120.00084 * 353.76682 * 8 7 6 11 11 C 1.46508 * 120.00115 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47009 * 179.97438 * 11 10 8 13 13 H 1.08996 * 110.64096 * 56.69022 * 12 11 10 14 14 C 1.54324 * 110.71921 * 293.54173 * 12 11 10 15 15 N 1.47017 * 107.27231 * 219.44284 * 14 12 11 16 16 C 1.36942 * 125.65000 * 178.90509 * 15 14 12 17 17 H 1.08000 * 120.00007 * 0.02562 * 16 15 14 18 18 C 1.38806 * 120.00076 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00342 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99919 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47265 * 60.00103 * 20 18 16 22 22 H 1.48497 * 109.46949 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46951 * 300.00187 * 20 18 16 24 24 C 1.47423 * 108.70529 * 358.94727 * 15 14 12 25 25 C 1.54910 * 104.82949 * 24.12370 * 24 15 14 26 26 H 1.08999 * 111.00681 * 81.06797 * 25 24 15 27 27 O 1.42900 * 111.00357 * 204.91592 * 25 24 15 28 28 C 1.38451 * 119.98942 * 180.27628 * 3 2 1 29 29 C 1.50703 * 120.10091 * 359.97438 * 28 3 2 30 30 H 1.09000 * 109.47748 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47436 * 300.00830 * 1 2 3 32 32 H 1.09006 * 109.46902 * 60.00658 * 1 2 3 33 33 H 1.07999 * 119.88737 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.90087 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.01419 * 179.97438 * 6 5 4 36 36 H 0.97007 * 120.00274 * 0.27538 * 10 8 7 37 37 H 1.09001 * 109.46734 * 299.99878 * 11 10 8 38 38 H 1.08997 * 109.47068 * 59.99797 * 11 10 8 39 39 H 1.08994 * 109.88682 * 338.87123 * 14 12 11 40 40 H 1.09007 * 109.87704 * 99.87923 * 14 12 11 41 41 H 0.96998 * 120.00333 * 180.02562 * 19 18 16 42 42 H 1.09004 * 110.36916 * 142.96273 * 24 15 14 43 43 H 1.08999 * 110.36831 * 265.17567 * 24 15 14 44 44 H 0.96701 * 114.00363 * 292.19804 * 27 25 24 45 45 H 1.09000 * 109.47124 * 263.64718 * 29 28 3 46 46 H 1.08993 * 109.47388 * 23.64649 * 29 28 3 47 47 H 1.08997 * 109.47190 * 143.65152 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2895 2.3752 -0.0005 5 6 1.9116 3.6097 -0.0011 6 6 3.2893 3.6930 -0.0016 7 6 4.0580 2.5282 -0.0011 8 6 5.5341 2.6135 -0.0022 9 8 6.2013 1.6040 0.1126 10 7 6.1398 3.8106 -0.1305 11 6 7.6025 3.8952 -0.1311 12 6 8.0287 5.3559 -0.2901 13 1 7.5927 5.9713 0.4968 14 6 7.6351 5.8910 -1.6831 15 7 8.7387 6.7417 -2.1518 16 6 8.7901 7.3905 -3.3567 17 1 7.9713 7.2984 -4.0550 18 6 9.8944 8.1664 -3.6806 19 7 10.8925 8.2784 -2.8300 20 14 9.9642 9.0520 -5.3240 21 1 8.8211 9.9940 -5.4276 22 1 11.2390 9.8067 -5.4258 23 1 9.8883 8.0585 -6.4252 24 6 9.7813 6.7800 -1.1103 25 6 9.5754 5.4790 -0.2951 26 1 10.0335 4.6267 -0.7970 27 8 10.0822 5.6213 1.0334 28 6 3.4287 1.2830 -0.0058 29 6 4.2513 0.0203 -0.0115 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 0.2111 2.3162 -0.0005 34 1 1.3179 4.5118 -0.0011 35 1 3.7721 4.6590 -0.0024 36 1 5.6074 4.6167 -0.2181 37 1 7.9893 3.5037 0.8098 38 1 8.0000 3.3088 -0.9594 39 1 7.4896 5.0592 -2.3723 40 1 6.7183 6.4761 -1.6099 41 1 11.6641 8.8209 -3.0562 42 1 10.7718 6.7899 -1.5652 43 1 9.6488 7.6541 -0.4728 44 1 11.0447 5.7017 1.0808 45 1 4.5493 -0.2238 1.0082 46 1 3.6592 -0.7973 -0.4226 47 1 5.1405 0.1688 -0.6241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958439500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:36 Heat of formation + Delta-G solvation = -89.311330 kcal Electronic energy + Delta-G solvation = -28566.848564 eV Core-core repulsion = 24521.947911 eV Total energy + Delta-G solvation = -4044.900653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.69989 -40.58253 -39.74816 -38.05965 -36.66620 -36.24700 -34.14646 -33.62154 -32.11976 -30.84488 -29.26485 -28.43055 -27.87350 -27.19278 -25.42148 -24.01049 -22.59258 -22.33237 -21.52587 -21.12612 -19.39437 -18.87435 -18.34940 -17.66015 -17.33371 -16.95049 -16.80265 -16.72736 -16.59071 -16.33570 -15.71258 -15.66105 -14.96398 -14.76355 -14.72246 -14.58584 -14.19879 -14.06125 -13.95787 -13.67314 -13.31515 -13.21906 -13.16202 -13.08004 -13.03921 -12.72097 -12.62538 -12.38284 -12.35860 -12.01781 -11.89998 -11.89074 -11.86742 -11.36735 -10.89319 -10.73478 -10.66615 -10.24236 -9.83337 -9.17346 -8.92464 -7.79472 -5.24817 -0.22568 0.36918 1.47657 1.50382 1.56688 1.80597 1.96349 2.43943 2.48501 2.77861 3.20208 3.30998 3.57490 3.63460 3.75147 3.77197 3.91277 4.01354 4.02290 4.10622 4.20814 4.42391 4.42944 4.43802 4.45047 4.49415 4.61098 4.68754 4.75280 4.76472 4.81209 4.82374 4.88882 4.96953 5.18634 5.22456 5.27404 5.35227 5.36667 5.42951 5.47591 5.49151 5.68096 5.74091 6.24992 6.39185 6.48006 6.88758 7.07637 7.14426 7.74029 8.36635 9.22193 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016946 B = 0.002398 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.956433 B =11674.568735 C =12644.275309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.106 3.894 4 C -0.175 4.175 5 C -0.089 4.089 6 C -0.120 4.120 7 C -0.119 4.119 8 C 0.554 3.446 9 O -0.564 6.564 10 N -0.710 5.710 11 C 0.148 3.852 12 C -0.088 4.088 13 H 0.094 0.906 14 C 0.139 3.861 15 N -0.623 5.623 16 C -0.240 4.240 17 H 0.084 0.916 18 C -0.067 4.067 19 N -0.949 5.949 20 Si 0.981 3.019 21 H -0.277 1.277 22 H -0.294 1.294 23 H -0.277 1.277 24 C 0.134 3.866 25 C 0.097 3.903 26 H 0.067 0.933 27 O -0.569 6.569 28 C -0.082 4.082 29 C -0.103 4.103 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.147 0.853 36 H 0.412 0.588 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.031 0.969 40 H 0.038 0.962 41 H 0.248 0.752 42 H 0.079 0.921 43 H -0.007 1.007 44 H 0.394 0.606 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.193 -12.430 7.979 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.061 3.939 4 C -0.193 4.193 5 C -0.107 4.107 6 C -0.139 4.139 7 C -0.122 4.122 8 C 0.343 3.657 9 O -0.445 6.445 10 N -0.362 5.362 11 C 0.024 3.976 12 C -0.107 4.107 13 H 0.112 0.888 14 C 0.014 3.986 15 N -0.351 5.351 16 C -0.368 4.368 17 H 0.102 0.898 18 C -0.259 4.259 19 N -0.599 5.599 20 Si 0.809 3.191 21 H -0.203 1.203 22 H -0.220 1.220 23 H -0.203 1.203 24 C 0.008 3.992 25 C 0.036 3.964 26 H 0.085 0.915 27 O -0.375 6.375 28 C -0.084 4.084 29 C -0.159 4.159 30 H 0.135 0.865 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.180 0.820 34 H 0.182 0.818 35 H 0.165 0.835 36 H 0.249 0.751 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.011 0.989 44 H 0.244 0.756 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.126 -13.237 8.090 26.210 hybrid contribution 0.703 1.215 -0.995 1.721 sum -20.422 -12.022 7.095 24.737 Atomic orbital electron populations 1.23391 0.76179 1.05685 1.02517 1.86064 1.23559 1.26306 1.88691 1.18774 0.91087 0.85634 0.98406 1.21784 1.01691 0.91522 1.04334 1.21272 0.93844 0.98458 0.97084 1.21503 0.94908 0.97310 1.00136 1.19538 0.91873 0.94150 1.06623 1.18508 0.88049 0.83104 0.76087 1.90714 1.67151 1.35588 1.51046 1.45827 1.07589 1.09188 1.73579 1.21166 0.79572 0.94918 1.01971 1.22236 0.95009 0.95599 0.97840 0.88774 1.21513 0.91371 0.93152 0.92516 1.44589 1.18245 1.56072 1.16149 1.19430 1.02757 1.21918 0.92740 0.89776 1.25642 0.96666 1.01590 1.02019 1.69994 1.08928 1.44498 1.36444 0.85111 0.76634 0.78193 0.79146 1.20332 1.22037 1.20311 1.22318 0.95504 0.92625 0.88781 1.22989 0.93375 0.97194 0.82867 0.91528 1.86343 1.28354 1.96412 1.26438 1.19431 0.91711 0.95408 1.01826 1.20727 0.99067 0.93590 1.02497 0.86533 0.91293 0.91394 0.82034 0.81754 0.83516 0.75054 0.91011 0.92090 0.95071 0.94378 0.94224 0.90336 0.98882 0.75640 0.91825 0.91524 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -6.14 9.43 -92.51 -0.87 -7.01 16 3 C 0.11 2.16 6.65 22.47 0.15 2.31 16 4 C -0.17 -2.52 9.03 22.42 0.20 -2.32 16 5 C -0.09 -1.23 10.03 22.22 0.22 -1.00 16 6 C -0.12 -2.16 9.52 22.54 0.21 -1.94 16 7 C -0.12 -2.92 5.87 -20.10 -0.12 -3.04 16 8 C 0.55 16.07 7.70 86.79 0.67 16.74 16 9 O -0.56 -19.89 13.35 -3.87 -0.05 -19.94 16 10 N -0.71 -18.45 5.35 -465.96 -2.49 -20.94 16 11 C 0.15 4.38 4.99 86.38 0.43 4.81 16 12 C -0.09 -2.90 2.75 -9.61 -0.03 -2.92 16 13 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 14 C 0.14 5.40 6.53 86.73 0.57 5.97 16 15 N -0.62 -31.22 3.39 -692.00 -2.35 -33.57 16 16 C -0.24 -13.11 10.27 84.03 0.86 -12.25 16 17 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 18 C -0.07 -3.70 5.49 84.86 0.47 -3.24 16 19 N -0.95 -55.38 10.09 21.65 0.22 -55.16 16 20 Si 0.98 44.78 29.55 68.60 2.03 46.81 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 C 0.13 6.43 5.62 86.86 0.49 6.91 16 25 C 0.10 3.58 3.88 31.99 0.12 3.71 16 26 H 0.07 2.43 8.05 -2.39 -0.02 2.41 16 27 O -0.57 -18.81 13.47 -148.98 -2.01 -20.82 16 28 C -0.08 -2.07 5.93 -19.50 -0.12 -2.18 16 29 C -0.10 -2.73 8.57 71.24 0.61 -2.12 16 30 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.40 7.66 -2.39 -0.02 0.38 16 32 H 0.07 0.41 7.66 -2.38 -0.02 0.40 16 33 H 0.16 1.26 6.28 -2.91 -0.02 1.24 16 34 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 35 H 0.15 2.03 6.45 -2.91 -0.02 2.01 16 36 H 0.41 8.71 6.40 -92.70 -0.59 8.11 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.06 1.96 8.06 -2.39 -0.02 1.94 16 39 H 0.03 1.21 7.76 -2.39 -0.02 1.19 16 40 H 0.04 1.38 8.14 -2.38 -0.02 1.37 16 41 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.08 4.27 5.87 -2.39 -0.01 4.25 16 43 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H 0.39 10.08 9.12 -74.06 -0.68 9.40 16 45 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.07 1.60 7.34 -2.39 -0.02 1.58 16 47 H 0.07 2.25 5.86 -2.39 -0.01 2.23 16 Total: -1.00 -73.44 378.16 0.07 -73.37 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -0.26 Total: 26.57 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 5.86 Total: 10.69 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -4.62 Total: -109.67 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -2.93 Total: -47.76 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -73.44 0.07 -73.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958439500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.943 kcal (2) G-P(sol) polarization free energy of solvation -73.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds