Wall clock time and date at job start Tue Mar 31 2020 19:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35992 * 117.00148 * 2 1 4 4 C 1.38565 * 120.07264 * 0.27818 * 3 2 1 5 5 C 1.38246 * 119.99705 * 180.27109 * 4 3 2 6 6 C 1.50707 * 119.92460 * 179.74610 * 5 4 3 7 7 C 1.38248 * 120.15087 * 359.72693 * 5 4 3 8 8 C 1.38243 * 120.14266 * 359.97438 * 7 5 4 9 9 C 1.38561 * 120.00201 * 0.02562 * 8 7 5 10 10 O 1.35996 * 120.07540 * 180.02562 * 9 8 7 11 11 C 1.42900 * 116.99828 * 359.97438 * 10 9 8 12 12 C 1.50704 * 109.47299 * 180.02562 * 11 10 9 13 13 O 1.21286 * 119.99620 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00229 * 179.97438 * 12 11 10 15 15 C 1.47423 * 125.64710 * 0.03243 * 14 12 11 16 16 C 1.54903 * 104.83345 * 155.83340 * 15 14 12 17 17 C 1.55160 * 101.58514 * 37.00430 * 16 15 14 18 18 H 1.09006 * 110.71536 * 83.03783 * 17 16 15 19 19 N 1.46490 * 110.72259 * 206.13520 * 17 16 15 20 20 C 1.36935 * 120.00121 * 204.99536 * 19 17 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 17 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 17 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46653 * 299.99639 * 24 22 20 27 27 H 1.48495 * 109.47483 * 60.00002 * 24 22 20 28 28 C 1.47020 * 125.64728 * 179.97438 * 14 12 11 29 29 H 1.09002 * 109.46978 * 299.99780 * 1 2 3 30 30 H 1.08997 * 109.47106 * 59.99683 * 1 2 3 31 31 H 1.09004 * 109.47061 * 180.02562 * 1 2 3 32 32 H 1.07995 * 120.00476 * 0.02562 * 4 3 2 33 33 H 1.08992 * 109.47028 * 269.98206 * 6 5 4 34 34 H 1.08999 * 109.47028 * 29.98488 * 6 5 4 35 35 H 1.08997 * 109.46867 * 149.97596 * 6 5 4 36 36 H 1.08001 * 119.92817 * 180.02562 * 7 5 4 37 37 H 1.07999 * 119.99672 * 180.02562 * 8 7 5 38 38 H 1.09008 * 109.47068 * 60.00235 * 11 10 9 39 39 H 1.09001 * 109.47311 * 300.00361 * 11 10 9 40 40 H 1.08994 * 110.36976 * 36.98820 * 15 14 12 41 41 H 1.09009 * 110.45594 * 274.71451 * 15 14 12 42 42 H 1.09000 * 111.00480 * 278.93284 * 16 15 14 43 43 H 1.09001 * 111.00850 * 155.08026 * 16 15 14 44 44 H 0.97000 * 120.00577 * 25.00135 * 19 17 16 45 45 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 46 46 H 1.08999 * 109.88183 * 61.68656 * 28 14 12 47 47 H 1.08992 * 109.88824 * 300.51994 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0058 5 6 1.9225 3.6057 0.0001 6 6 1.1017 4.8696 0.0007 7 6 3.3029 3.6798 -0.0056 8 6 4.0603 2.5233 -0.0052 9 6 3.4360 1.2863 0.0004 10 8 4.1795 0.1476 0.0014 11 6 5.6003 0.3006 -0.0043 12 6 6.2519 -1.0582 -0.0030 13 8 5.5670 -2.0592 0.0018 14 7 7.5957 -1.1613 -0.0081 15 6 8.5439 -0.0324 -0.0146 16 6 9.8475 -0.6061 0.5945 17 6 9.8561 -2.0448 0.0137 18 1 10.2720 -2.0515 -0.9938 19 7 10.6042 -2.9520 0.8874 20 6 11.1730 -4.0857 0.3712 21 1 11.0704 -4.3108 -0.6801 22 6 11.8815 -4.9457 1.1991 23 7 12.0061 -4.6716 2.4805 24 14 12.6580 -6.4918 0.4948 25 1 13.3523 -7.2342 1.5773 26 1 11.6009 -7.3517 -0.0954 27 1 13.6374 -6.1187 -0.5573 28 6 8.3587 -2.4180 -0.0070 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2147 2.3197 0.0108 33 1 0.8996 5.1720 -1.0267 34 1 0.1595 4.6908 0.5188 35 1 1.6523 5.6601 0.5106 36 1 3.7908 4.6434 -0.0096 37 1 5.1385 2.5840 -0.0093 38 1 5.9098 0.8532 0.8829 39 1 5.9033 0.8476 -0.8971 40 1 8.1655 0.7845 0.5997 41 1 8.7206 0.3108 -1.0341 42 1 9.7950 -0.6245 1.6831 43 1 10.7175 -0.0431 0.2564 44 1 10.6966 -2.7498 1.8315 45 1 11.6031 -3.8686 2.8461 46 1 8.1318 -2.9902 -0.9066 47 1 8.1099 -3.0020 0.8789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970659550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:45 Heat of formation + Delta-G solvation = -85.214230 kcal Electronic energy + Delta-G solvation = -28019.954911 eV Core-core repulsion = 23975.231922 eV Total energy + Delta-G solvation = -4044.722989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.76232 -41.07215 -39.57151 -38.70311 -38.08282 -36.30811 -33.53050 -32.90201 -31.42518 -31.08041 -30.30216 -28.77910 -28.18885 -26.80019 -25.73658 -24.21378 -23.24574 -22.44563 -21.82094 -20.48263 -19.68910 -19.51457 -18.27510 -18.07848 -17.78530 -17.50909 -17.05183 -16.62464 -16.50957 -16.24334 -15.71293 -15.63166 -15.32592 -15.19718 -14.96533 -14.69640 -14.45806 -14.32703 -14.08064 -13.73664 -13.50774 -13.19076 -13.03832 -12.99491 -12.85520 -12.74438 -12.58318 -12.42143 -12.24820 -12.17268 -12.04780 -11.89832 -11.76094 -11.67823 -11.29386 -11.11628 -10.96908 -9.81626 -9.69284 -9.23175 -8.77117 -8.42868 -5.39139 0.27370 0.40984 1.36209 1.38250 1.57865 1.67417 1.83419 2.36430 2.46159 2.68965 2.69286 3.25680 3.36965 3.54479 3.74459 3.80404 3.84464 3.92169 3.97372 4.02792 4.08982 4.22262 4.22871 4.27426 4.33525 4.34285 4.40905 4.41512 4.60804 4.63384 4.66656 4.78301 4.82884 4.89532 4.91708 5.07865 5.10592 5.12075 5.26196 5.27609 5.28040 5.57661 5.61548 5.77424 6.02302 6.37103 6.46223 6.58938 6.95485 7.03408 7.92633 8.02312 9.08471 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024716 B = 0.001992 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.587900 B =14052.179466 C =14891.638158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.077 3.923 4 C -0.177 4.177 5 C -0.088 4.088 6 C -0.109 4.109 7 C -0.118 4.118 8 C -0.166 4.166 9 C 0.060 3.940 10 O -0.320 6.320 11 C 0.055 3.945 12 C 0.517 3.483 13 O -0.584 6.584 14 N -0.608 5.608 15 C 0.100 3.900 16 C -0.131 4.131 17 C 0.170 3.830 18 H 0.075 0.925 19 N -0.737 5.737 20 C -0.337 4.337 21 H 0.069 0.931 22 C -0.102 4.102 23 N -0.973 5.973 24 Si 1.126 2.874 25 H -0.293 1.293 26 H -0.283 1.283 27 H -0.272 1.272 28 C 0.095 3.905 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.153 0.847 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.067 0.933 43 H 0.109 0.891 44 H 0.363 0.637 45 H 0.245 0.755 46 H 0.043 0.957 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.863 26.475 -7.317 34.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.032 3.968 4 C -0.195 4.195 5 C -0.088 4.088 6 C -0.165 4.165 7 C -0.136 4.136 8 C -0.185 4.185 9 C 0.015 3.985 10 O -0.234 6.234 11 C -0.022 4.022 12 C 0.306 3.694 13 O -0.464 6.464 14 N -0.343 5.343 15 C -0.021 4.021 16 C -0.170 4.170 17 C 0.059 3.941 18 H 0.093 0.907 19 N -0.378 5.378 20 C -0.468 4.468 21 H 0.087 0.913 22 C -0.293 4.293 23 N -0.620 5.620 24 Si 0.951 3.049 25 H -0.219 1.219 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.031 4.031 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.125 0.875 32 H 0.170 0.830 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.175 0.825 37 H 0.180 0.820 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.133 0.867 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.127 0.873 44 H 0.196 0.804 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -20.392 24.165 -7.193 32.427 hybrid contribution -1.060 0.619 0.214 1.246 sum -21.452 24.783 -6.978 33.513 Atomic orbital electron populations 1.23310 0.76641 1.05143 1.02388 1.86204 1.23340 1.26970 1.89184 1.18699 0.89589 0.85912 1.02641 1.21196 1.00718 0.90501 1.07091 1.20069 0.94585 0.95184 0.98949 1.20808 0.99281 0.93170 1.03275 1.21153 0.93073 0.98695 1.00677 1.21416 1.01934 0.90041 1.05076 1.18734 0.88657 0.86383 1.04704 1.86203 1.17738 1.29753 1.89698 1.22544 0.79555 0.93577 1.06564 1.20553 0.81056 0.91532 0.76302 1.90732 1.63356 1.40810 1.51460 1.48486 1.04244 1.09627 1.71978 1.22736 0.87327 0.88434 1.03613 1.23053 0.98584 0.94588 1.00774 1.21380 0.87205 0.90285 0.95191 0.90715 1.42548 1.62378 1.25164 1.07672 1.20407 1.29641 1.01320 0.95481 0.91275 1.27195 1.00748 1.06258 0.95119 1.71001 1.49125 1.28373 1.13500 0.82650 0.75798 0.72131 0.74346 1.21927 1.20993 1.19732 1.22797 0.94673 0.86269 0.99407 0.91354 0.91244 0.87472 0.82966 0.90146 0.90911 0.90025 0.82475 0.82040 0.85934 0.85466 0.86720 0.87717 0.91437 0.87275 0.80441 0.94455 0.93836 0.95117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.34 -9.45 10.28 -79.60 -0.82 -10.27 16 3 C 0.08 1.90 6.70 22.57 0.15 2.05 16 4 C -0.18 -3.02 8.69 22.35 0.19 -2.82 16 5 C -0.09 -1.18 5.88 -19.86 -0.12 -1.30 16 6 C -0.11 -0.75 10.01 71.24 0.71 -0.04 16 7 C -0.12 -1.52 9.69 22.27 0.22 -1.30 16 8 C -0.17 -2.71 9.04 22.35 0.20 -2.51 16 9 C 0.06 1.50 6.70 22.57 0.15 1.65 16 10 O -0.32 -9.89 9.45 -67.09 -0.63 -10.53 16 11 C 0.06 1.25 4.23 71.24 0.30 1.55 16 12 C 0.52 17.37 7.93 87.66 0.69 18.07 16 13 O -0.58 -26.98 16.83 15.99 0.27 -26.71 16 14 N -0.61 -18.55 3.33 -811.81 -2.70 -21.25 16 15 C 0.10 1.90 6.69 86.85 0.58 2.48 16 16 C -0.13 -3.37 6.71 31.98 0.21 -3.15 16 17 C 0.17 6.34 3.61 46.18 0.17 6.51 16 18 H 0.07 2.74 8.09 -2.38 -0.02 2.72 16 19 N -0.74 -36.23 5.15 -317.33 -1.63 -37.86 16 20 C -0.34 -18.78 9.96 84.03 0.84 -17.94 16 21 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 22 C -0.10 -5.90 5.50 84.86 0.47 -5.44 16 23 N -0.97 -60.88 13.70 21.65 0.30 -60.58 16 24 Si 1.13 52.26 29.92 68.60 2.05 54.31 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 28 C 0.09 3.74 6.62 86.73 0.57 4.32 16 29 H 0.07 0.83 7.65 -2.39 -0.02 0.81 16 30 H 0.07 0.83 7.68 -2.39 -0.02 0.81 16 31 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.15 1.83 6.30 -2.91 -0.02 1.82 16 33 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.07 0.41 8.08 -2.39 -0.02 0.39 16 35 H 0.08 0.37 8.08 -2.39 -0.02 0.35 16 36 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 37 H 0.16 1.58 6.30 -2.91 -0.02 1.56 16 38 H 0.12 1.91 7.37 -2.38 -0.02 1.89 16 39 H 0.13 1.87 7.66 -2.39 -0.02 1.85 16 40 H 0.11 1.29 7.48 -2.39 -0.02 1.28 16 41 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.07 1.87 8.01 -2.39 -0.02 1.85 16 43 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.36 18.62 6.59 -92.71 -0.61 18.01 16 45 H 0.25 15.20 6.77 -92.71 -0.63 14.58 16 46 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.03 1.44 8.03 -2.39 -0.02 1.42 16 Total: -1.00 -87.61 388.42 3.81 -83.80 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.52 Total: 25.56 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 6.46 Total: 3.54 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -4.04 Total: -119.70 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -1.18 Total: -47.51 kcal Atomic # 14 Polarization: 52.26 SS G_CDS: 2.05 Total: 54.31 kcal Total: -87.61 3.81 -83.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970659550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.414 kcal (2) G-P(sol) polarization free energy of solvation -87.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds