Wall clock time and date at job start Tue Mar 31 2020 18:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35913 * 116.99682 * 2 1 4 4 C 1.38858 * 119.98452 * 359.97438 * 3 2 1 5 5 C 1.38245 * 120.23800 * 179.97438 * 4 3 2 6 6 C 1.38013 * 120.20892 * 0.02562 * 5 4 3 7 7 C 1.39563 * 119.96220 * 0.02562 * 6 5 4 8 8 C 1.47853 * 120.11755 * 179.97438 * 7 6 5 9 9 O 1.21554 * 120.00327 * 186.48510 * 8 7 6 10 10 N 1.34773 * 120.00078 * 6.48130 * 8 7 6 11 11 C 1.46500 * 120.00465 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47351 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.51956 * 60.00233 * 12 11 10 14 14 C 1.53304 * 109.51322 * 180.10128 * 12 11 10 15 15 N 1.47149 * 108.38541 * 172.22183 * 14 12 11 16 16 C 1.36939 * 120.98100 * 129.48770 * 15 14 12 17 17 H 1.08000 * 120.00056 * 207.49483 * 16 15 14 18 18 C 1.38816 * 119.99881 * 27.48759 * 16 15 14 19 19 N 1.31620 * 119.99636 * 14.17423 * 18 16 15 20 20 Si 1.86799 * 119.99852 * 194.17443 * 18 16 15 21 21 H 1.48504 * 109.47166 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47291 * 120.00182 * 20 18 16 23 23 H 1.48502 * 109.46826 * 239.99980 * 20 18 16 24 24 C 1.47147 * 118.03917 * 309.46901 * 15 14 12 25 25 C 1.53296 * 108.38545 * 50.52980 * 24 15 14 26 26 O 1.42952 * 109.26683 * 307.72509 * 25 24 15 27 27 C 1.38455 * 119.98493 * 180.02562 * 3 2 1 28 28 C 1.50697 * 120.10015 * 359.97218 * 27 3 2 29 29 H 1.08996 * 109.46659 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46684 * 299.99342 * 1 2 3 31 31 H 1.08992 * 109.47513 * 60.00123 * 1 2 3 32 32 H 1.07998 * 119.87997 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.89654 * 180.02562 * 5 4 3 34 34 H 1.07996 * 120.01705 * 179.72817 * 6 5 4 35 35 H 0.97003 * 119.99703 * 0.02562 * 10 8 7 36 36 H 1.09007 * 109.47221 * 300.00671 * 11 10 8 37 37 H 1.09000 * 109.46909 * 59.99855 * 11 10 8 38 38 H 1.08996 * 109.68188 * 291.94765 * 14 12 11 39 39 H 1.09005 * 109.68018 * 52.46172 * 14 12 11 40 40 H 0.97002 * 119.99103 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.68706 * 170.25556 * 24 15 14 42 42 H 1.09001 * 109.67942 * 290.77288 * 24 15 14 43 43 H 1.09004 * 109.51357 * 67.62452 * 25 24 15 44 44 H 1.09004 * 109.51261 * 187.77602 * 25 24 15 45 45 H 1.08999 * 109.47144 * 97.07825 * 28 27 3 46 46 H 1.09003 * 109.47050 * 217.07597 * 28 27 3 47 47 H 1.08997 * 109.47462 * 337.07496 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2893 2.3753 -0.0005 5 6 1.9114 3.6099 0.0000 6 6 3.2890 3.6933 0.0005 7 6 4.0579 2.5286 0.0000 8 6 5.5339 2.6139 0.0000 9 8 6.2011 1.6049 -0.1194 10 7 6.1397 3.8106 0.1323 11 6 7.6023 3.8953 0.1317 12 6 8.0286 5.3555 0.2959 13 1 7.6430 5.7436 1.2386 14 6 9.5590 5.4455 0.2929 15 7 9.9403 6.8664 0.2628 16 6 10.8447 7.3727 1.1578 17 1 10.8014 8.4148 1.4383 18 6 11.8170 6.5465 1.7046 19 7 12.0543 5.3670 1.1710 20 14 12.7884 7.1088 3.1977 21 1 12.3334 8.4631 3.6031 22 1 12.5699 6.1581 4.3173 23 1 14.2339 7.1521 2.8602 24 6 9.3214 7.7271 -0.7577 25 6 7.8027 7.5259 -0.7035 26 8 7.5085 6.1295 -0.7877 27 6 3.4287 1.2832 -0.0005 28 6 4.2514 0.0206 -0.0005 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 0.2110 2.3162 -0.0005 33 1 1.3175 4.5120 0.0000 34 1 3.7718 4.6594 -0.0035 35 1 5.6073 4.6158 0.2278 36 1 8.0007 3.3057 0.9574 37 1 7.9883 3.5075 -0.8110 38 1 9.9560 4.9779 1.1939 39 1 9.9548 4.9399 -0.5879 40 1 12.7340 4.7899 1.5529 41 1 9.5610 8.7705 -0.5524 42 1 9.6937 7.4523 -1.7446 43 1 7.4161 7.9228 0.2352 44 1 7.3363 8.0473 -1.5395 45 1 4.5554 -0.2150 -1.0204 46 1 5.1369 0.1640 0.6187 47 1 3.6569 -0.8004 0.4002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035525500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:39 Heat of formation + Delta-G solvation = -62.940005 kcal Electronic energy + Delta-G solvation = -28720.476502 eV Core-core repulsion = 24676.719396 eV Total energy + Delta-G solvation = -4043.757107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.78076 -39.49308 -38.47527 -37.22486 -34.96308 -34.36596 -32.77824 -31.63003 -31.21436 -30.15619 -27.88032 -27.46263 -26.92976 -25.49715 -23.47611 -23.18644 -22.03796 -21.37142 -20.53058 -19.65168 -18.42617 -17.06552 -16.79440 -16.34519 -16.14291 -15.99000 -15.94217 -15.52980 -15.13180 -14.83218 -14.38014 -14.20464 -13.99568 -13.84185 -13.44239 -13.39410 -13.24262 -12.90826 -12.78893 -12.56157 -12.39173 -12.22976 -12.11244 -11.80936 -11.53636 -11.38699 -11.16158 -11.09708 -10.88741 -10.72817 -10.42272 -10.25804 -10.05999 -9.68329 -9.55667 -9.18057 -9.07938 -8.77147 -8.58427 -8.39202 -6.76206 -5.86330 -3.32442 0.65441 1.15394 2.83794 2.86474 3.32015 3.38088 3.40656 3.42207 3.68384 4.23800 4.41572 4.46239 4.51877 4.73672 4.77064 4.78429 4.85517 5.06212 5.12318 5.18886 5.26044 5.34021 5.52670 5.54560 5.61767 5.69168 5.84374 5.88494 5.91228 5.97734 6.01368 6.10177 6.11592 6.18980 6.22491 6.27943 6.35180 6.48178 6.56364 6.68720 6.76641 7.05917 7.06826 7.47764 7.65017 7.68865 7.82179 8.31544 8.33553 9.09061 9.71193 10.28581 11.21547 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021519 B = 0.002338 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.885251 B =11973.614605 C =12645.176388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.113 3.887 4 C -0.184 4.184 5 C -0.096 4.096 6 C -0.117 4.117 7 C -0.098 4.098 8 C 0.553 3.447 9 O -0.531 6.531 10 N -0.713 5.713 11 C 0.133 3.867 12 C 0.054 3.946 13 H 0.056 0.944 14 C 0.153 3.847 15 N -0.594 5.594 16 C -0.256 4.256 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.906 3.094 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.109 3.891 25 C 0.050 3.950 26 O -0.390 6.390 27 C -0.053 4.053 28 C -0.111 4.111 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.401 0.599 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.032 0.968 40 H 0.256 0.744 41 H 0.062 0.938 42 H 0.027 0.973 43 H 0.043 0.957 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.095 0.905 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.051 -5.476 -2.164 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.068 3.932 4 C -0.203 4.203 5 C -0.114 4.114 6 C -0.136 4.136 7 C -0.102 4.102 8 C 0.340 3.660 9 O -0.409 6.409 10 N -0.364 5.364 11 C 0.009 3.991 12 C -0.005 4.005 13 H 0.074 0.926 14 C 0.026 3.974 15 N -0.318 5.318 16 C -0.385 4.385 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.736 3.264 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.216 1.216 24 C -0.018 4.018 25 C -0.028 4.028 26 O -0.310 6.310 27 C -0.055 4.055 28 C -0.167 4.167 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.237 0.763 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.061 0.939 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.113 0.887 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.405 -6.562 -2.337 24.419 hybrid contribution 0.102 1.102 0.923 1.441 sum -23.303 -5.460 -1.414 23.976 Atomic orbital electron populations 1.23069 0.78475 1.04018 1.01277 1.86094 1.21157 1.26454 1.88816 1.18680 0.91543 0.84441 0.98548 1.21378 1.00107 0.92317 1.06482 1.20834 0.94288 0.97148 0.99109 1.21258 0.94019 0.97632 1.00706 1.19664 0.93272 0.92993 1.04237 1.18132 0.86993 0.83665 0.77201 1.90742 1.66136 1.34554 1.49498 1.45902 1.08354 1.08702 1.73419 1.21457 0.78429 0.95821 1.03355 1.23170 0.98828 0.89180 0.89349 0.92624 1.21320 0.86946 0.86298 1.02827 1.44036 1.48535 1.05102 1.34154 1.19229 1.06467 0.95727 1.17107 0.91353 1.25117 0.96896 0.97478 1.00122 1.69999 1.34027 1.10517 1.40109 0.86169 0.79655 0.78087 0.82525 1.20241 1.21427 1.21571 1.21605 0.91422 0.95761 0.92982 1.23004 0.97628 0.81885 1.00265 1.87775 1.77010 1.19022 1.47171 1.19353 0.90496 0.95748 0.99873 1.20895 0.99651 0.92580 1.03608 0.88171 0.92674 0.92650 0.85194 0.85163 0.85196 0.76329 0.89784 0.90522 0.88451 0.95025 0.93408 0.91993 0.95539 0.93893 0.90028 0.90857 0.88686 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.17 9.42 -19.47 -0.18 -3.35 16 3 C 0.11 1.26 6.65 -39.27 -0.26 1.00 16 4 C -0.18 -1.66 9.03 -39.35 -0.36 -2.01 16 5 C -0.10 -0.85 10.03 -39.66 -0.40 -1.24 16 6 C -0.12 -1.23 9.52 -39.17 -0.37 -1.61 16 7 C -0.10 -1.29 5.87 -104.99 -0.62 -1.91 16 8 C 0.55 8.53 7.70 -12.33 -0.09 8.44 16 9 O -0.53 -9.63 13.36 5.32 0.07 -9.56 16 10 N -0.71 -10.42 5.40 -61.25 -0.33 -10.76 16 11 C 0.13 2.25 5.37 -4.05 -0.02 2.23 16 12 C 0.05 1.01 2.86 -26.58 -0.08 0.94 16 13 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 14 C 0.15 3.57 4.71 -3.53 -0.02 3.55 16 15 N -0.59 -14.67 3.05 -171.82 -0.52 -15.19 16 16 C -0.26 -6.87 9.65 -15.06 -0.15 -7.02 16 17 H 0.07 1.79 7.87 -52.49 -0.41 1.38 16 18 C 0.00 0.07 5.00 -17.43 -0.09 -0.01 16 19 N -0.90 -25.75 11.06 55.49 0.61 -25.13 16 20 Si 0.91 21.30 29.58 -169.99 -5.03 16.27 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 24 C 0.11 2.23 6.74 -3.54 -0.02 2.21 16 25 C 0.05 0.86 6.98 37.31 0.26 1.12 16 26 O -0.39 -7.11 10.14 -35.23 -0.36 -7.47 16 27 C -0.05 -0.69 5.93 -104.06 -0.62 -1.31 16 28 C -0.11 -1.47 8.56 36.00 0.31 -1.16 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 32 H 0.13 0.81 6.28 -52.49 -0.33 0.48 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 1.15 6.45 -52.49 -0.34 0.81 16 35 H 0.40 5.06 6.43 -40.82 -0.26 4.80 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.10 2.51 6.15 -51.93 -0.32 2.19 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.09 1.41 5.90 -51.93 -0.31 1.10 16 47 H 0.06 0.72 7.32 -51.93 -0.38 0.34 16 LS Contribution 377.06 15.07 5.68 5.68 Total: -1.00 -32.10 377.06 -8.50 -40.60 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.92 Total: 4.56 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -1.53 Total: 4.35 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.24 Total: -51.08 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.47 Total: -20.38 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.10 -8.50 -40.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035525500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.340 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds