Wall clock time and date at job start Tue Mar 31 2020 18:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35708 * 117.00199 * 2 1 4 4 C 1.39013 * 119.91029 * 0.02562 * 3 2 1 5 5 C 1.37680 * 120.08895 * 179.97438 * 4 3 2 6 6 C 1.39758 * 119.91225 * 359.97438 * 5 4 3 7 7 C 1.47599 * 120.08740 * 180.02562 * 6 5 4 8 8 O 1.21592 * 119.99609 * 130.02012 * 7 6 5 9 9 N 1.34773 * 120.00231 * 310.01945 * 7 6 5 10 10 C 1.46494 * 119.99948 * 4.46719 * 9 7 6 11 11 C 1.46498 * 119.99895 * 184.46970 * 9 7 6 12 12 H 1.08999 * 110.89107 * 357.57576 * 11 9 7 13 13 C 1.54916 * 111.00592 * 121.45129 * 11 9 7 14 14 N 1.47426 * 104.83476 * 155.08143 * 13 11 9 15 15 C 1.36933 * 125.64911 * 155.83641 * 14 13 11 16 16 H 1.07998 * 119.99810 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99968 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99994 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00099 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47040 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47481 * 119.99721 * 19 17 15 22 22 H 1.48509 * 109.46945 * 240.00079 * 19 17 15 23 23 C 1.47026 * 108.70232 * 335.87613 * 14 13 11 24 24 C 1.54331 * 107.26908 * 1.05637 * 23 14 13 25 25 H 1.08995 * 110.72017 * 263.82659 * 24 23 14 26 26 O 1.42904 * 110.71742 * 140.55905 * 24 23 14 27 27 C 1.39712 * 119.82093 * 0.02562 * 6 5 4 28 28 C 1.50704 * 120.04125 * 180.02562 * 27 6 5 29 29 C 1.37723 * 119.91308 * 359.74244 * 27 6 5 30 30 H 1.09000 * 109.46957 * 299.99718 * 1 2 3 31 31 H 1.09004 * 109.46829 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46866 * 60.00472 * 1 2 3 33 33 H 1.07998 * 119.95541 * 359.95387 * 4 3 2 34 34 H 1.07997 * 120.04711 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.47084 * 92.95142 * 10 9 7 36 36 H 1.09001 * 109.47452 * 212.95035 * 10 9 7 37 37 H 1.08996 * 109.47114 * 332.94942 * 10 9 7 38 38 H 1.08996 * 110.37104 * 273.92596 * 13 11 9 39 39 H 1.09007 * 110.36087 * 36.24775 * 13 11 9 40 40 H 0.97003 * 119.99726 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.88128 * 120.47228 * 23 14 13 42 42 H 1.08998 * 109.88540 * 241.64088 * 23 14 13 43 43 H 0.96700 * 113.99848 * 66.47355 * 26 24 23 44 44 H 1.08997 * 109.47286 * 84.54173 * 28 27 6 45 45 H 1.09007 * 109.46806 * 204.53466 * 28 27 6 46 46 H 1.09000 * 109.47382 * 324.53412 * 28 27 6 47 47 H 1.08006 * 119.95920 * 180.25373 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2862 2.3738 0.0005 5 6 1.9075 3.6025 0.0011 6 6 3.3031 3.6778 0.0016 7 6 3.9731 4.9929 0.0028 8 8 4.8522 5.2266 0.8097 9 7 3.6106 5.9347 -0.8905 10 6 2.4867 5.6899 -1.7977 11 6 4.3406 7.2033 -0.9544 12 1 5.1159 7.2445 -0.1894 13 6 4.9401 7.4286 -2.3650 14 7 5.0809 8.8911 -2.4861 15 6 5.9579 9.5428 -3.3114 16 1 6.6231 8.9773 -3.9470 17 6 5.9919 10.9304 -3.3312 18 7 5.1808 11.6196 -2.5569 19 14 7.1877 11.8194 -4.4577 20 1 7.9829 10.8237 -5.2202 21 1 6.4312 12.6786 -5.4036 22 1 8.1002 12.6628 -3.6442 23 6 4.1245 9.5340 -1.5731 24 6 3.3720 8.4091 -0.8314 25 1 2.4225 8.1925 -1.3207 26 8 3.1681 8.7560 0.5398 27 6 4.0621 2.5049 0.0011 28 6 5.5673 2.5803 0.0022 29 6 3.4331 1.2797 0.0054 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 -0.8900 33 1 0.2079 2.3148 0.0002 34 1 1.3173 4.5069 0.0019 35 1 1.5708 6.0822 -1.3556 36 1 2.6728 6.1875 -2.7495 37 1 2.3801 4.6178 -1.9630 38 1 5.9140 6.9458 -2.4448 39 1 4.2632 7.0481 -3.1300 40 1 5.2043 12.5893 -2.5710 41 1 4.6583 10.1581 -0.8564 42 1 3.4188 10.1396 -2.1418 43 1 2.5701 9.5044 0.6714 44 1 5.9246 2.6952 1.0256 45 1 5.9772 1.6651 -0.4251 46 1 5.8888 3.4350 -0.5930 47 1 4.0192 0.3725 0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047510521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:13 Heat of formation + Delta-G solvation = -53.324713 kcal Electronic energy + Delta-G solvation = -29446.572773 eV Core-core repulsion = 25403.232617 eV Total energy + Delta-G solvation = -4043.340156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.81057 -39.72595 -38.17202 -37.11252 -35.23558 -34.80796 -32.74479 -31.98590 -30.86454 -28.73327 -27.93504 -27.31656 -26.89484 -26.50236 -24.51626 -23.31625 -21.89840 -20.50617 -20.35641 -19.04111 -18.02983 -17.50609 -17.11956 -16.67333 -16.62556 -16.12169 -15.87406 -15.14151 -14.73629 -14.63730 -14.38484 -14.04039 -13.98264 -13.65611 -13.48526 -13.24408 -12.94531 -12.66607 -12.63999 -12.53306 -12.34384 -12.18523 -12.09069 -12.01587 -11.95695 -11.45478 -11.23278 -11.15783 -11.03907 -10.86640 -10.81062 -10.13119 -9.92072 -9.84164 -9.70418 -9.25886 -9.05574 -8.72874 -8.45115 -8.31537 -6.92763 -5.77725 -3.12940 0.89258 1.08467 2.81345 2.89264 3.11397 3.37546 3.43295 3.45638 3.55135 4.42880 4.44736 4.53002 4.56319 4.71230 4.74169 4.77180 4.90130 5.06093 5.11858 5.16805 5.23687 5.25560 5.40732 5.47091 5.50558 5.62102 5.65673 5.67065 5.71631 5.77126 5.82991 5.86616 6.00527 6.06551 6.08821 6.15009 6.33105 6.41534 6.48335 6.59843 6.89737 7.04158 7.34091 7.46686 7.58903 7.72763 8.15383 8.19639 8.35264 9.12959 9.73115 10.36146 11.33708 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022755 B = 0.002614 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.180964 B =10709.329664 C =11019.509297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.147 3.853 4 C -0.221 4.221 5 C -0.043 4.043 6 C -0.161 4.161 7 C 0.564 3.436 8 O -0.529 6.529 9 N -0.595 5.595 10 C 0.069 3.931 11 C 0.134 3.866 12 H 0.116 0.884 13 C 0.131 3.869 14 N -0.599 5.599 15 C -0.229 4.229 16 H 0.081 0.919 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.915 3.085 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.153 3.847 24 C 0.066 3.934 25 H 0.055 0.945 26 O -0.560 6.560 27 C 0.005 3.995 28 C -0.117 4.117 29 C -0.160 4.160 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.026 0.974 40 H 0.253 0.747 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.373 0.627 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.034 -20.800 3.862 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.101 3.899 4 C -0.240 4.240 5 C -0.062 4.062 6 C -0.165 4.165 7 C 0.352 3.648 8 O -0.406 6.406 9 N -0.326 5.326 10 C -0.074 4.074 11 C 0.030 3.970 12 H 0.134 0.866 13 C 0.004 3.996 14 N -0.327 5.327 15 C -0.357 4.357 16 H 0.099 0.901 17 C -0.204 4.204 18 N -0.569 5.569 19 Si 0.745 3.255 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.027 3.973 24 C 0.005 3.995 25 H 0.073 0.927 26 O -0.365 6.365 27 C 0.004 3.996 28 C -0.173 4.173 29 C -0.179 4.179 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.220 0.780 44 H 0.103 0.897 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.012 -21.140 4.319 24.224 hybrid contribution -0.367 1.241 -0.743 1.493 sum -11.378 -19.898 3.576 23.199 Atomic orbital electron populations 1.23098 0.78141 1.04055 1.01614 1.86031 1.21617 1.27000 1.88228 1.19187 0.92253 0.84120 0.94331 1.21111 1.00138 0.91938 1.10813 1.21130 0.93076 0.97675 0.94274 1.19723 0.93759 0.93300 1.09698 1.18172 0.82565 0.83493 0.80618 1.90794 1.31758 1.80251 1.37818 1.47652 1.32909 1.16393 1.35675 1.21991 0.88712 1.02153 0.94576 1.22407 0.94312 0.80047 1.00222 0.86641 1.21788 0.98194 0.87506 0.92116 1.44246 1.42608 0.98617 1.47195 1.19116 1.12278 0.89132 1.15194 0.90078 1.24830 0.99569 0.96185 0.99779 1.69948 1.39857 1.05757 1.41386 0.85997 0.80140 0.79611 0.79712 1.20412 1.21709 1.21644 1.21839 0.91764 0.91145 0.92504 1.23538 0.97187 0.96268 0.82487 0.92669 1.86509 1.70552 1.54245 1.25172 1.19688 0.96452 0.90599 0.92820 1.20877 0.89792 1.02841 1.03812 1.20195 0.91179 0.97979 1.08510 0.92452 0.88166 0.92392 0.84991 0.84932 0.92719 0.90265 0.90633 0.93324 0.95629 0.93675 0.92147 0.93436 0.78041 0.89731 0.91350 0.90780 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.92 10.48 -18.83 -0.20 -3.12 16 3 C 0.15 1.51 6.70 -39.02 -0.26 1.25 16 4 C -0.22 -2.09 9.01 -39.50 -0.36 -2.44 16 5 C -0.04 -0.47 7.62 -39.22 -0.30 -0.77 16 6 C -0.16 -2.18 4.86 -104.96 -0.51 -2.69 16 7 C 0.56 9.43 6.30 -12.44 -0.08 9.36 16 8 O -0.53 -10.76 15.24 5.28 0.08 -10.68 16 9 N -0.59 -9.55 2.91 -172.69 -0.50 -10.05 16 10 C 0.07 0.84 7.87 59.84 0.47 1.31 16 11 C 0.13 2.61 3.18 -65.78 -0.21 2.40 16 12 H 0.12 2.61 7.01 -51.93 -0.36 2.25 16 13 C 0.13 2.73 6.81 -2.52 -0.02 2.72 16 14 N -0.60 -15.19 3.39 -170.06 -0.58 -15.77 16 15 C -0.23 -6.33 10.28 -15.06 -0.15 -6.48 16 16 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 17 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 18 N -0.92 -26.72 10.31 55.49 0.57 -26.15 16 19 Si 0.92 21.95 29.55 -169.99 -5.02 16.93 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 C 0.15 3.67 5.15 -3.06 -0.02 3.65 16 24 C 0.07 1.27 3.89 -24.90 -0.10 1.17 16 25 H 0.06 0.95 6.99 -51.93 -0.36 0.59 16 26 O -0.56 -10.52 13.39 -35.23 -0.47 -10.99 16 27 C 0.01 0.07 5.91 -104.26 -0.62 -0.55 16 28 C -0.12 -1.38 8.88 36.01 0.32 -1.06 16 29 C -0.16 -1.73 9.60 -39.50 -0.38 -2.11 16 30 H 0.06 0.26 7.65 -51.93 -0.40 -0.13 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 33 H 0.13 0.90 6.28 -52.49 -0.33 0.57 16 34 H 0.13 1.30 6.65 -52.49 -0.35 0.95 16 35 H 0.05 0.58 7.42 -51.93 -0.39 0.20 16 36 H 0.08 0.98 6.28 -51.93 -0.33 0.66 16 37 H 0.08 0.79 5.71 -51.93 -0.30 0.49 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.03 0.50 6.26 -51.93 -0.32 0.18 16 40 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.06 1.65 7.30 -51.93 -0.38 1.27 16 42 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 43 H 0.37 5.37 9.12 45.56 0.42 5.78 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 46 H 0.07 1.00 7.09 -51.93 -0.37 0.63 16 47 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -34.42 373.53 -7.71 -42.13 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.91 Total: 5.51 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -1.31 Total: 6.57 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.51 Total: -51.98 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.59 Total: -24.79 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.42 -7.71 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047510521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.195 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds