Wall clock time and date at job start Tue Mar 31 2020 17:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35905 * 117.00160 * 2 1 4 4 C 1.38753 * 120.05407 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94435 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05526 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94158 * 179.69610 * 6 5 4 8 8 C 1.50692 * 109.47497 * 265.00341 * 7 6 5 9 9 O 1.21283 * 119.99961 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00242 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00315 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.88999 * 34.28716 * 11 10 8 13 13 C 1.54911 * 111.00324 * 270.41545 * 11 10 8 14 14 N 1.47464 * 104.81342 * 204.94683 * 13 11 10 15 15 C 1.36935 * 125.63087 * 204.04314 * 14 13 11 16 16 H 1.07995 * 120.00132 * 354.80975 * 15 14 13 17 17 C 1.38818 * 120.00015 * 174.80770 * 15 14 13 18 18 N 1.31615 * 119.99970 * 7.05496 * 17 15 14 19 19 Si 1.86804 * 119.99824 * 187.05681 * 17 15 14 20 20 H 1.48499 * 109.47033 * 94.98883 * 19 17 15 21 21 H 1.48498 * 109.46992 * 214.98388 * 19 17 15 22 22 H 1.48496 * 109.47258 * 334.98526 * 19 17 15 23 23 C 1.47027 * 108.72107 * 24.07095 * 14 13 11 24 24 C 1.54318 * 107.27062 * 358.97175 * 23 14 13 25 25 H 1.09004 * 110.72141 * 96.17588 * 24 23 14 26 26 O 1.42894 * 110.87484 * 219.37379 * 24 23 14 27 27 C 1.38235 * 120.11069 * 359.97438 * 6 5 4 28 28 C 1.50703 * 119.97058 * 179.97438 * 27 6 5 29 29 C 1.38166 * 120.05944 * 359.97438 * 27 6 5 30 30 H 1.09000 * 109.47497 * 59.99229 * 1 2 3 31 31 H 1.08990 * 109.46929 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46452 * 299.99218 * 1 2 3 33 33 H 1.08000 * 120.02920 * 0.04158 * 4 3 2 34 34 H 1.08007 * 119.97039 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.47140 * 25.00762 * 7 6 5 36 36 H 1.09007 * 109.46924 * 145.00087 * 7 6 5 37 37 H 0.97006 * 119.99943 * 359.97438 * 10 8 7 38 38 H 1.09006 * 110.36351 * 323.75163 * 13 11 10 39 39 H 1.09002 * 110.37115 * 86.07394 * 13 11 10 40 40 H 0.97006 * 120.00089 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.87871 * 239.55897 * 23 14 13 42 42 H 1.08999 * 110.01135 * 118.46626 * 23 14 13 43 43 H 0.96704 * 114.00410 * 293.61710 * 26 24 23 44 44 H 1.08996 * 109.47306 * 89.99801 * 28 27 6 45 45 H 1.09000 * 109.47087 * 209.99641 * 28 27 6 46 46 H 1.08998 * 109.47174 * 329.99274 * 28 27 6 47 47 H 1.08002 * 120.03151 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 3.9860 5.0186 -0.0091 8 6 4.3231 5.4028 -1.4267 9 8 4.0356 4.6596 -2.3411 10 7 4.9440 6.5722 -1.6785 11 6 5.2711 6.9460 -3.0567 12 1 4.5097 6.5855 -3.7484 13 6 6.6744 6.4247 -3.4552 14 7 7.1218 7.3300 -4.5298 15 6 8.0455 7.0278 -5.4944 16 1 8.5743 6.0868 -5.4599 17 6 8.3024 7.9312 -6.5167 18 7 7.7641 9.1318 -6.4847 19 14 9.4118 7.4426 -7.9380 20 1 8.5825 6.9452 -9.0650 21 1 10.1949 8.6231 -8.3831 22 1 10.3399 6.3710 -7.4958 23 6 6.4125 8.6106 -4.3938 24 6 5.4593 8.4805 -3.1872 25 1 5.9180 8.8907 -2.2874 26 8 4.2106 9.1222 -3.4532 27 6 4.0559 2.5172 -0.0021 28 6 5.5608 2.5983 -0.0045 29 6 3.4311 1.2849 -0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 0.2128 2.3204 0.0016 34 1 1.3339 4.5115 0.0000 35 1 3.3215 5.7673 0.4221 36 1 4.9016 4.9631 0.5798 37 1 5.1735 7.1668 -0.9473 38 1 7.3549 6.4797 -2.6054 39 1 6.6083 5.4009 -3.8237 40 1 7.9433 9.7629 -7.1992 41 1 5.8396 8.8150 -5.2984 42 1 7.1262 9.4154 -4.2174 43 1 4.2734 10.0830 -3.5437 44 1 5.9252 2.6184 1.0226 45 1 5.9707 1.7288 -0.5184 46 1 5.8749 3.5062 -0.5194 47 1 4.0206 0.3800 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077053792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:56 Heat of formation + Delta-G solvation = -97.941223 kcal Electronic energy + Delta-G solvation = -28690.077906 eV Core-core repulsion = 24644.803032 eV Total energy + Delta-G solvation = -4045.274873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.46783 -40.75102 -39.52132 -38.49493 -36.67042 -35.49243 -33.80302 -33.51459 -33.03598 -30.39697 -29.54626 -28.70473 -27.45153 -27.30124 -26.12731 -23.36146 -22.55669 -22.15468 -21.71368 -21.08891 -19.10275 -18.67309 -18.41857 -17.82721 -17.51597 -17.38188 -16.69536 -16.63610 -16.11027 -16.08213 -15.75085 -15.31463 -15.04491 -14.78672 -14.70060 -14.46282 -14.24981 -14.17294 -14.14985 -13.71445 -13.29363 -13.17465 -13.08813 -13.04765 -12.89173 -12.77922 -12.76209 -12.63188 -12.25696 -12.08358 -11.90352 -11.80426 -11.68343 -11.51881 -11.09742 -10.77468 -10.75534 -10.10282 -9.70605 -9.01828 -8.97069 -7.91399 -5.26777 0.39230 0.43717 1.44011 1.47078 1.55169 1.71615 2.13593 2.38061 2.46886 2.81530 3.14428 3.29590 3.56637 3.72955 3.82383 3.86825 3.95902 4.06738 4.08249 4.19738 4.25490 4.33423 4.37954 4.38388 4.43885 4.47161 4.58574 4.62191 4.68234 4.73959 4.81656 4.83518 4.85477 5.03920 5.05894 5.20708 5.34640 5.36145 5.42370 5.45358 5.51999 5.65803 5.69576 5.85730 6.12888 6.46316 6.64283 6.87885 7.03787 7.36113 7.68577 8.31272 9.18866 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017321 B = 0.002436 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.140455 B =11489.287460 C =12217.836598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.115 3.885 4 C -0.220 4.220 5 C -0.072 4.072 6 C -0.118 4.118 7 C -0.087 4.087 8 C 0.511 3.489 9 O -0.580 6.580 10 N -0.702 5.702 11 C 0.155 3.845 12 H 0.065 0.935 13 C 0.132 3.868 14 N -0.623 5.623 15 C -0.248 4.248 16 H 0.081 0.919 17 C -0.061 4.061 18 N -0.946 5.946 19 Si 0.977 3.023 20 H -0.290 1.290 21 H -0.289 1.289 22 H -0.267 1.267 23 C 0.159 3.841 24 C 0.092 3.908 25 H 0.098 0.902 26 O -0.569 6.569 27 C -0.040 4.040 28 C -0.116 4.116 29 C -0.174 4.174 30 H 0.058 0.942 31 H 0.119 0.881 32 H 0.068 0.932 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.418 0.582 38 H 0.045 0.955 39 H 0.030 0.970 40 H 0.250 0.750 41 H 0.019 0.981 42 H 0.025 0.975 43 H 0.396 0.604 44 H 0.099 0.901 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.488 -8.999 21.350 26.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.069 3.931 4 C -0.238 4.238 5 C -0.090 4.090 6 C -0.118 4.118 7 C -0.126 4.126 8 C 0.299 3.701 9 O -0.458 6.458 10 N -0.355 5.355 11 C 0.048 3.952 12 H 0.083 0.917 13 C 0.005 3.995 14 N -0.351 5.351 15 C -0.376 4.376 16 H 0.098 0.902 17 C -0.254 4.254 18 N -0.594 5.594 19 Si 0.805 3.195 20 H -0.217 1.217 21 H -0.215 1.215 22 H -0.192 1.192 23 C 0.034 3.966 24 C 0.032 3.968 25 H 0.116 0.884 26 O -0.377 6.377 27 C -0.040 4.040 28 C -0.173 4.173 29 C -0.192 4.192 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.086 0.914 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.256 0.744 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.038 0.962 42 H 0.043 0.957 43 H 0.246 0.754 44 H 0.117 0.883 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.748 -10.233 20.575 26.278 hybrid contribution 0.646 0.799 -1.235 1.606 sum -12.101 -9.434 19.340 24.688 Atomic orbital electron populations 1.23318 0.76570 1.05484 1.02135 1.86026 1.23419 1.26984 1.88801 1.19187 0.92549 0.84743 0.96575 1.21392 1.00936 0.91961 1.09557 1.21084 0.93911 0.97950 0.96087 1.19302 0.93693 0.94011 1.04831 1.20672 1.04366 0.95582 0.92016 1.21311 0.76120 0.80290 0.92373 1.90739 1.54387 1.52162 1.48551 1.45713 1.60402 1.21544 1.07868 1.21650 0.95934 0.93368 0.84268 0.91700 1.21947 0.92859 0.93470 0.91205 1.44528 1.47265 1.11576 1.31695 1.19423 1.14087 1.02216 1.01903 0.90160 1.25658 1.02423 0.96261 1.01078 1.70129 1.49462 1.05841 1.33989 0.85079 0.77989 0.77194 0.79204 1.21747 1.21546 1.19195 1.21634 0.92572 0.87944 0.94495 1.23147 0.84572 0.91582 0.97536 0.88432 1.86435 1.30018 1.26412 1.94831 1.19754 0.96904 0.91762 0.95567 1.20878 0.89893 1.02916 1.03584 1.20424 0.91848 0.98447 1.08512 0.92381 0.86308 0.91358 0.83605 0.84007 0.84890 0.85137 0.74380 0.93727 0.95193 0.94113 0.96245 0.95668 0.75386 0.88263 0.91447 0.92110 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.43 10.50 -92.48 -0.97 -8.41 16 3 C 0.11 2.75 6.69 22.51 0.15 2.90 16 4 C -0.22 -4.65 9.04 22.37 0.20 -4.45 16 5 C -0.07 -1.54 9.67 22.25 0.22 -1.32 16 6 C -0.12 -2.64 4.37 -19.85 -0.09 -2.73 16 7 C -0.09 -1.53 5.14 29.10 0.15 -1.38 16 8 C 0.51 14.18 7.03 87.65 0.62 14.79 16 9 O -0.58 -22.64 15.73 -3.04 -0.05 -22.68 16 10 N -0.70 -18.36 5.21 -435.97 -2.27 -20.63 16 11 C 0.15 5.70 3.09 46.38 0.14 5.84 16 12 H 0.06 2.92 7.63 -2.39 -0.02 2.90 16 13 C 0.13 5.63 6.93 86.85 0.60 6.23 16 14 N -0.62 -32.54 3.40 -691.87 -2.35 -34.89 16 15 C -0.25 -14.18 10.26 84.04 0.86 -13.31 16 16 H 0.08 4.45 7.84 -2.91 -0.02 4.43 16 17 C -0.06 -3.48 5.48 84.86 0.46 -3.02 16 18 N -0.95 -56.39 10.36 21.65 0.22 -56.16 16 19 Si 0.98 46.27 29.56 68.60 2.03 48.30 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 23 C 0.16 7.67 5.16 86.73 0.45 8.12 16 24 C 0.09 3.21 3.96 31.78 0.13 3.33 16 25 H 0.10 2.69 8.00 -2.38 -0.02 2.67 16 26 O -0.57 -18.52 13.40 -148.98 -2.00 -20.52 16 27 C -0.04 -0.94 5.88 -19.88 -0.12 -1.05 16 28 C -0.12 -2.30 9.22 71.24 0.66 -1.64 16 29 C -0.17 -4.27 9.64 22.37 0.22 -4.06 16 30 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 31 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.68 7.66 -2.38 -0.02 0.66 16 33 H 0.15 2.30 6.30 -2.91 -0.02 2.29 16 34 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.13 1.48 8.05 -2.39 -0.02 1.46 16 36 H 0.13 1.58 6.99 -2.38 -0.02 1.56 16 37 H 0.42 7.34 8.54 -92.70 -0.79 6.55 16 38 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 41 H 0.02 1.08 7.22 -2.39 -0.02 1.06 16 42 H 0.03 1.30 7.61 -2.39 -0.02 1.28 16 43 H 0.40 9.41 9.12 -74.05 -0.68 8.73 16 44 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 46 H 0.06 1.32 6.14 -2.39 -0.01 1.31 16 47 H 0.13 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -81.22 384.68 -0.09 -81.31 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -0.46 Total: 24.08 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.76 Total: 9.60 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -4.40 Total: -111.69 kcal Atomic # 8 Polarization: -48.59 SS G_CDS: -3.01 Total: -51.60 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -81.22 -0.09 -81.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077053792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.633 kcal (2) G-P(sol) polarization free energy of solvation -81.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds