Wall clock time and date at job start Tue Mar 31 2020 18:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35654 * 117.00338 * 2 1 4 4 C 1.38706 * 120.14907 * 0.02562 * 3 2 1 5 5 C 1.38055 * 120.08406 * 179.97438 * 4 3 2 6 6 C 1.38552 * 120.38910 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.84829 * 179.97438 * 6 5 4 8 8 C 1.37790 * 120.29847 * 359.67697 * 6 5 4 9 9 C 1.39703 * 119.90973 * 0.60114 * 8 6 5 10 10 C 1.47535 * 120.19477 * 179.69833 * 9 8 6 11 11 O 1.21589 * 120.00382 * 179.72457 * 10 9 8 12 12 N 1.34785 * 119.99695 * 359.72480 * 10 9 8 13 13 C 1.46497 * 119.99606 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.88888 * 37.42794 * 13 12 10 15 15 C 1.54912 * 111.00379 * 273.54230 * 13 12 10 16 16 N 1.47425 * 104.83156 * 204.91948 * 15 13 12 17 17 C 1.36930 * 125.64778 * 204.09123 * 16 15 13 18 18 H 1.08001 * 120.00119 * 10.06486 * 17 16 15 19 19 C 1.38810 * 119.99961 * 190.06311 * 17 16 15 20 20 N 1.31631 * 119.99846 * 195.14253 * 19 17 16 21 21 Si 1.86798 * 120.00326 * 15.13878 * 19 17 16 22 22 H 1.48505 * 109.47267 * 174.49184 * 21 19 17 23 23 H 1.48507 * 109.46844 * 54.49250 * 21 19 17 24 24 H 1.48496 * 109.47237 * 294.49670 * 21 19 17 25 25 C 1.47021 * 108.70462 * 24.35748 * 16 15 13 26 26 C 1.54336 * 107.26378 * 358.58474 * 25 16 15 27 27 H 1.09000 * 110.51510 * 96.45432 * 26 25 16 28 28 O 1.42904 * 111.00042 * 219.59922 * 26 25 16 29 29 C 1.42900 * 114.00244 * 263.78013 * 28 26 25 30 30 H 1.09007 * 109.46919 * 300.00172 * 1 2 3 31 31 H 1.08999 * 109.47252 * 59.99853 * 1 2 3 32 32 H 1.08997 * 109.47517 * 180.02562 * 1 2 3 33 33 H 1.08000 * 119.95803 * 0.02562 * 4 3 2 34 34 H 1.07996 * 119.80656 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.46870 * 90.00040 * 7 6 5 36 36 H 1.08997 * 109.47005 * 209.99758 * 7 6 5 37 37 H 1.08995 * 109.47163 * 330.00409 * 7 6 5 38 38 H 1.08003 * 120.04569 * 180.32099 * 8 6 5 39 39 H 0.97002 * 119.99572 * 359.97438 * 12 10 9 40 40 H 1.08997 * 110.36463 * 86.08418 * 15 13 12 41 41 H 1.08997 * 110.36507 * 323.75685 * 15 13 12 42 42 H 0.96996 * 119.99667 * 2.97181 * 20 19 17 43 43 H 1.09008 * 109.88462 * 118.12838 * 25 16 15 44 44 H 1.08998 * 109.88225 * 239.29524 * 25 16 15 45 45 H 1.08999 * 109.47126 * 300.00482 * 29 28 26 46 46 H 1.09000 * 109.47149 * 59.99836 * 29 28 26 47 47 H 1.08999 * 109.47287 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2925 2.3739 0.0005 5 6 1.9208 3.6033 0.0011 6 6 3.3040 3.6835 0.0005 7 6 3.9770 5.0319 0.0005 8 6 4.0669 2.5361 0.0062 9 6 3.4442 1.2855 -0.0002 10 6 4.2550 0.0529 -0.0010 11 8 3.7094 -1.0337 -0.0015 12 7 5.6005 0.1314 -0.0010 13 6 6.4056 -1.0925 -0.0023 14 1 5.9435 -1.8610 -0.6220 15 6 6.6362 -1.6069 1.4406 16 7 7.8801 -2.3948 1.3660 17 6 8.2411 -3.3992 2.2238 18 1 7.5267 -3.7832 2.9369 19 6 9.5253 -3.9240 2.1767 20 7 9.7914 -5.0670 2.7727 21 14 10.8758 -3.0083 1.2673 22 1 12.1719 -3.7024 1.4763 23 1 10.9685 -1.6199 1.7863 24 1 10.5606 -2.9743 -0.1834 25 6 8.6716 -1.9191 0.2220 26 6 7.8578 -0.8024 -0.4654 27 1 8.1848 0.1777 -0.1182 28 8 7.9627 -0.8937 -1.8877 29 6 8.9621 -0.0427 -2.4526 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.2139 2.3195 0.0014 34 1 1.3306 4.5077 0.0019 35 1 4.1397 5.3567 1.0282 36 1 4.9354 4.9596 -0.5136 37 1 3.3428 5.7546 -0.5128 38 1 5.1448 2.6034 0.0110 39 1 6.0357 0.9984 -0.0010 40 1 5.8055 -2.2384 1.7554 41 1 6.7585 -0.7691 2.1270 42 1 9.0811 -5.5639 3.2080 43 1 9.6261 -1.5242 0.5702 44 1 8.8398 -2.7373 -0.4782 45 1 8.7329 0.9956 -2.2129 46 1 9.9369 -0.3040 -2.0408 47 1 8.9791 -0.1710 -3.5349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081911834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:34 Heat of formation + Delta-G solvation = -45.317000 kcal Electronic energy + Delta-G solvation = -29368.538859 eV Core-core repulsion = 25325.545944 eV Total energy + Delta-G solvation = -4042.992916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.77666 -39.44545 -38.23671 -37.81570 -36.17321 -34.15876 -32.47006 -32.11235 -31.40476 -29.02925 -28.16300 -27.77070 -26.33130 -26.22651 -24.51588 -23.36674 -21.85243 -21.05232 -20.48581 -20.05692 -18.58862 -17.63527 -17.09464 -16.79479 -16.46639 -16.03381 -15.98439 -15.06931 -14.91552 -14.77483 -14.62808 -14.50805 -14.18682 -14.02677 -13.92060 -13.79995 -13.32012 -13.15035 -12.70747 -12.53452 -12.42507 -12.31831 -12.09942 -11.88191 -11.82626 -11.78353 -11.40631 -11.21880 -11.11462 -11.10492 -10.63107 -10.05699 -9.85689 -9.66016 -9.35081 -9.22400 -8.98364 -8.89403 -8.58002 -8.31355 -7.04862 -6.29424 -3.20354 0.65014 1.08373 2.86494 3.06347 3.18414 3.41205 3.46518 3.69298 3.70232 3.85663 4.39123 4.41674 4.55623 4.62675 4.73015 4.81877 4.92735 4.93757 4.97164 5.07169 5.14168 5.23379 5.25134 5.30246 5.30720 5.32234 5.39529 5.47077 5.52713 5.55224 5.59971 5.69497 5.82067 5.84685 5.88645 5.94653 6.19810 6.21100 6.39551 6.44074 6.54576 6.59990 6.79060 7.15935 7.37848 7.65157 7.65695 8.34921 8.42830 9.06013 9.55981 10.21319 11.21842 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.003177 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.571759 B = 8811.593381 C = 9742.993580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.278 6.278 3 C 0.180 3.820 4 C -0.217 4.217 5 C -0.056 4.056 6 C -0.136 4.136 7 C -0.109 4.109 8 C -0.048 4.048 9 C -0.162 4.162 10 C 0.559 3.441 11 O -0.512 6.512 12 N -0.717 5.717 13 C 0.138 3.862 14 H 0.109 0.891 15 C 0.131 3.869 16 N -0.606 5.606 17 C -0.321 4.321 18 H 0.081 0.919 19 C -0.022 4.022 20 N -0.927 5.927 21 Si 1.069 2.931 22 H -0.300 1.300 23 H -0.299 1.299 24 H -0.284 1.284 25 C 0.096 3.904 26 C 0.072 3.928 27 H 0.072 0.928 28 O -0.374 6.374 29 C 0.029 3.971 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.132 0.868 39 H 0.393 0.607 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.262 0.738 43 H 0.033 0.967 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.043 0.957 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.153 23.050 -9.203 29.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.189 6.189 3 C 0.132 3.868 4 C -0.236 4.236 5 C -0.074 4.074 6 C -0.136 4.136 7 C -0.165 4.165 8 C -0.067 4.067 9 C -0.166 4.166 10 C 0.346 3.654 11 O -0.387 6.387 12 N -0.369 5.369 13 C 0.033 3.967 14 H 0.126 0.874 15 C 0.004 3.996 16 N -0.335 5.335 17 C -0.448 4.448 18 H 0.099 0.901 19 C -0.221 4.221 20 N -0.569 5.569 21 Si 0.903 3.097 22 H -0.228 1.228 23 H -0.228 1.228 24 H -0.211 1.211 25 C -0.030 4.030 26 C 0.013 3.987 27 H 0.090 0.910 28 O -0.292 6.292 29 C -0.067 4.067 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.149 0.851 39 H 0.228 0.772 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.080 0.920 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.962 21.770 -9.627 27.596 hybrid contribution -1.477 0.956 0.586 1.855 sum -15.439 22.726 -9.040 28.923 Atomic orbital electron populations 1.23163 0.78824 1.04413 1.00984 1.86413 1.20659 1.25284 1.86520 1.19056 0.90989 0.84956 0.91844 1.21221 1.00289 0.91968 1.10118 1.20973 0.93938 0.97083 0.95397 1.19721 0.93595 0.95524 1.04763 1.20723 1.00447 0.92980 1.02399 1.21050 0.99685 0.90352 0.95577 1.19394 0.90900 0.94041 1.12247 1.17920 0.81855 0.88617 0.77013 1.90849 1.71384 1.28527 1.47972 1.45775 1.05849 1.09245 1.76015 1.22317 0.88926 0.86829 0.98649 0.87350 1.21865 0.90664 0.94721 0.92391 1.44610 1.18359 1.40240 1.30332 1.20195 0.98705 1.10704 1.15169 0.90084 1.25822 0.97482 0.97908 1.00919 1.70895 1.35880 1.12257 1.37833 0.83869 0.76004 0.73970 0.75886 1.22796 1.22786 1.21142 1.22406 0.94142 0.95606 0.90845 1.23408 0.95435 0.98745 0.81106 0.90979 1.87958 1.56941 1.64625 1.19667 1.22798 0.91582 0.93155 0.99186 0.92662 0.92698 0.87900 0.84806 0.85429 0.91223 0.91454 0.91602 0.85066 0.77188 0.92359 0.95455 0.92761 0.94956 0.91972 0.94299 0.93816 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.28 -3.90 8.57 -40.54 -0.35 -4.24 16 3 C 0.18 2.30 6.70 -38.69 -0.26 2.04 16 4 C -0.22 -2.02 9.03 -39.48 -0.36 -2.38 16 5 C -0.06 -0.45 9.68 -39.53 -0.38 -0.83 16 6 C -0.14 -1.14 5.87 -104.67 -0.61 -1.76 16 7 C -0.11 -0.62 10.00 36.01 0.36 -0.26 16 8 C -0.05 -0.48 9.18 -39.20 -0.36 -0.84 16 9 C -0.16 -2.16 5.89 -104.85 -0.62 -2.78 16 10 C 0.56 9.27 7.76 -12.47 -0.10 9.17 16 11 O -0.51 -10.59 14.91 -16.59 -0.25 -10.84 16 12 N -0.72 -10.76 5.18 -52.76 -0.27 -11.04 16 13 C 0.14 2.56 3.04 -65.78 -0.20 2.36 16 14 H 0.11 2.28 7.73 -51.93 -0.40 1.88 16 15 C 0.13 2.84 6.93 -2.53 -0.02 2.82 16 16 N -0.61 -15.49 3.33 -170.07 -0.57 -16.05 16 17 C -0.32 -9.50 10.56 -15.06 -0.16 -9.66 16 18 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 19 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 20 N -0.93 -29.77 13.71 55.49 0.76 -29.01 16 21 Si 1.07 27.13 24.52 -169.99 -4.17 22.97 16 22 H -0.30 -7.75 7.11 56.52 0.40 -7.34 16 23 H -0.30 -7.20 6.82 56.52 0.39 -6.81 16 24 H -0.28 -6.65 5.41 56.52 0.31 -6.34 16 25 C 0.10 2.15 4.40 -3.06 -0.01 2.14 16 26 C 0.07 1.27 3.05 -24.89 -0.08 1.20 16 27 H 0.07 1.07 7.68 -51.93 -0.40 0.67 16 28 O -0.37 -6.30 10.45 -35.23 -0.37 -6.67 16 29 C 0.03 0.36 10.85 101.05 1.10 1.46 16 30 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 31 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 37 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 38 H 0.13 1.03 6.40 -52.48 -0.34 0.69 16 39 H 0.39 4.53 6.54 -40.82 -0.27 4.26 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.26 8.34 8.73 -40.82 -0.36 7.99 16 43 H 0.03 0.75 3.89 -51.92 -0.20 0.55 16 44 H 0.06 1.51 6.62 -51.93 -0.34 1.17 16 45 H 0.04 0.39 8.11 -51.93 -0.42 -0.03 16 46 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 376.70 15.07 5.68 5.68 Total: -1.00 -37.47 376.70 -7.32 -44.79 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.98 Total: 1.32 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -0.80 Total: 3.10 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.08 Total: -56.10 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.96 Total: -21.75 kcal Atomic # 14 Polarization: 27.13 SS G_CDS: -4.17 Total: 22.97 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.47 -7.32 -44.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081911834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.526 kcal (2) G-P(sol) polarization free energy of solvation -37.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds