Wall clock time and date at job start Tue Mar 31 2020 18:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35654 * 117.00338 * 2 1 4 4 C 1.38706 * 120.14907 * 0.02562 * 3 2 1 5 5 C 1.38055 * 120.08406 * 179.97438 * 4 3 2 6 6 C 1.38552 * 120.38910 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.84829 * 179.97438 * 6 5 4 8 8 C 1.37790 * 120.29847 * 359.67697 * 6 5 4 9 9 C 1.39703 * 119.90973 * 0.60114 * 8 6 5 10 10 C 1.47535 * 120.19477 * 179.69833 * 9 8 6 11 11 O 1.21589 * 120.00382 * 179.72457 * 10 9 8 12 12 N 1.34785 * 119.99695 * 359.72480 * 10 9 8 13 13 C 1.46497 * 119.99606 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.88888 * 37.42794 * 13 12 10 15 15 C 1.54912 * 111.00379 * 273.54230 * 13 12 10 16 16 N 1.47425 * 104.83156 * 204.91948 * 15 13 12 17 17 C 1.36930 * 125.64778 * 204.09123 * 16 15 13 18 18 H 1.08001 * 120.00119 * 10.06486 * 17 16 15 19 19 C 1.38810 * 119.99961 * 190.06311 * 17 16 15 20 20 N 1.31631 * 119.99846 * 195.14253 * 19 17 16 21 21 Si 1.86798 * 120.00326 * 15.13878 * 19 17 16 22 22 H 1.48505 * 109.47267 * 174.49184 * 21 19 17 23 23 H 1.48507 * 109.46844 * 54.49250 * 21 19 17 24 24 H 1.48496 * 109.47237 * 294.49670 * 21 19 17 25 25 C 1.47021 * 108.70462 * 24.35748 * 16 15 13 26 26 C 1.54336 * 107.26378 * 358.58474 * 25 16 15 27 27 H 1.09000 * 110.51510 * 96.45432 * 26 25 16 28 28 O 1.42904 * 111.00042 * 219.59922 * 26 25 16 29 29 C 1.42900 * 114.00244 * 263.78013 * 28 26 25 30 30 H 1.09007 * 109.46919 * 300.00172 * 1 2 3 31 31 H 1.08999 * 109.47252 * 59.99853 * 1 2 3 32 32 H 1.08997 * 109.47517 * 180.02562 * 1 2 3 33 33 H 1.08000 * 119.95803 * 0.02562 * 4 3 2 34 34 H 1.07996 * 119.80656 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.46870 * 90.00040 * 7 6 5 36 36 H 1.08997 * 109.47005 * 209.99758 * 7 6 5 37 37 H 1.08995 * 109.47163 * 330.00409 * 7 6 5 38 38 H 1.08003 * 120.04569 * 180.32099 * 8 6 5 39 39 H 0.97002 * 119.99572 * 359.97438 * 12 10 9 40 40 H 1.08997 * 110.36463 * 86.08418 * 15 13 12 41 41 H 1.08997 * 110.36507 * 323.75685 * 15 13 12 42 42 H 0.96996 * 119.99667 * 2.97181 * 20 19 17 43 43 H 1.09008 * 109.88462 * 118.12838 * 25 16 15 44 44 H 1.08998 * 109.88225 * 239.29524 * 25 16 15 45 45 H 1.08999 * 109.47126 * 300.00482 * 29 28 26 46 46 H 1.09000 * 109.47149 * 59.99836 * 29 28 26 47 47 H 1.08999 * 109.47287 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2925 2.3739 0.0005 5 6 1.9208 3.6033 0.0011 6 6 3.3040 3.6835 0.0005 7 6 3.9770 5.0319 0.0005 8 6 4.0669 2.5361 0.0062 9 6 3.4442 1.2855 -0.0002 10 6 4.2550 0.0529 -0.0010 11 8 3.7094 -1.0337 -0.0015 12 7 5.6005 0.1314 -0.0010 13 6 6.4056 -1.0925 -0.0023 14 1 5.9435 -1.8610 -0.6220 15 6 6.6362 -1.6069 1.4406 16 7 7.8801 -2.3948 1.3660 17 6 8.2411 -3.3992 2.2238 18 1 7.5267 -3.7832 2.9369 19 6 9.5253 -3.9240 2.1767 20 7 9.7914 -5.0670 2.7727 21 14 10.8758 -3.0083 1.2673 22 1 12.1719 -3.7024 1.4763 23 1 10.9685 -1.6199 1.7863 24 1 10.5606 -2.9743 -0.1834 25 6 8.6716 -1.9191 0.2220 26 6 7.8578 -0.8024 -0.4654 27 1 8.1848 0.1777 -0.1182 28 8 7.9627 -0.8937 -1.8877 29 6 8.9621 -0.0427 -2.4526 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.2139 2.3195 0.0014 34 1 1.3306 4.5077 0.0019 35 1 4.1397 5.3567 1.0282 36 1 4.9354 4.9596 -0.5136 37 1 3.3428 5.7546 -0.5128 38 1 5.1448 2.6034 0.0110 39 1 6.0357 0.9984 -0.0010 40 1 5.8055 -2.2384 1.7554 41 1 6.7585 -0.7691 2.1270 42 1 9.0811 -5.5639 3.2080 43 1 9.6261 -1.5242 0.5702 44 1 8.8398 -2.7373 -0.4782 45 1 8.7329 0.9956 -2.2129 46 1 9.9369 -0.3040 -2.0408 47 1 8.9791 -0.1710 -3.5349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081911834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:33 Heat of formation + Delta-G solvation = -73.549546 kcal Electronic energy + Delta-G solvation = -29369.763114 eV Core-core repulsion = 25325.545944 eV Total energy + Delta-G solvation = -4044.217171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.73947 -40.74094 -39.52112 -38.62053 -37.70750 -35.73602 -34.18902 -33.07355 -32.38279 -30.66033 -29.59257 -28.66728 -27.49364 -26.83100 -25.99088 -24.68974 -22.90609 -22.68209 -21.84081 -21.38015 -19.84083 -19.32641 -18.32340 -18.05000 -17.68581 -17.24279 -16.81748 -16.28604 -16.21094 -16.01710 -15.74682 -15.68571 -15.36366 -15.25306 -15.02920 -14.73686 -14.69422 -14.46549 -14.34478 -13.75045 -13.57693 -13.34421 -13.12944 -13.09248 -12.98426 -12.83484 -12.51902 -12.42746 -12.33742 -12.09739 -11.77967 -11.77360 -11.56702 -11.20979 -11.02923 -10.94281 -10.57023 -10.23462 -10.02701 -9.20320 -9.07029 -8.72310 -5.55315 -0.16465 0.36897 1.36436 1.47683 1.68660 1.84119 1.93749 2.34792 2.52296 2.56306 2.79207 3.05922 3.27384 3.41099 3.64733 3.69283 3.76777 3.84542 3.90949 4.10720 4.16786 4.26055 4.33143 4.34678 4.35318 4.43430 4.45843 4.57361 4.63666 4.64940 4.70408 4.73329 4.77426 4.88734 4.89861 4.94218 4.96409 5.05852 5.24529 5.30422 5.30825 5.46421 5.57182 5.78657 6.00880 6.16394 6.37087 6.53266 6.73845 7.21547 7.33063 7.97446 8.80533 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.003177 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.571759 B = 8811.593381 C = 9742.993580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.321 6.321 3 C 0.154 3.846 4 C -0.216 4.216 5 C -0.046 4.046 6 C -0.134 4.134 7 C -0.108 4.108 8 C -0.047 4.047 9 C -0.194 4.194 10 C 0.555 3.445 11 O -0.567 6.567 12 N -0.699 5.699 13 C 0.153 3.847 14 H 0.075 0.925 15 C 0.131 3.869 16 N -0.626 5.626 17 C -0.319 4.319 18 H 0.043 0.957 19 C -0.078 4.078 20 N -0.959 5.959 21 Si 1.109 2.891 22 H -0.307 1.307 23 H -0.270 1.270 24 H -0.253 1.253 25 C 0.086 3.914 26 C 0.093 3.907 27 H 0.116 0.884 28 O -0.393 6.393 29 C 0.017 3.983 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.152 0.848 39 H 0.414 0.586 40 H 0.025 0.975 41 H 0.047 0.953 42 H 0.247 0.753 43 H 0.044 0.956 44 H 0.040 0.960 45 H 0.070 0.930 46 H 0.045 0.955 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.957 28.590 -11.058 34.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.234 6.234 3 C 0.106 3.894 4 C -0.234 4.234 5 C -0.064 4.064 6 C -0.134 4.134 7 C -0.164 4.164 8 C -0.066 4.066 9 C -0.198 4.198 10 C 0.345 3.655 11 O -0.446 6.446 12 N -0.353 5.353 13 C 0.046 3.954 14 H 0.094 0.906 15 C 0.005 3.995 16 N -0.355 5.355 17 C -0.447 4.447 18 H 0.061 0.939 19 C -0.271 4.271 20 N -0.603 5.603 21 Si 0.935 3.065 22 H -0.236 1.236 23 H -0.196 1.196 24 H -0.178 1.178 25 C -0.039 4.039 26 C 0.034 3.966 27 H 0.134 0.866 28 O -0.312 6.312 29 C -0.079 4.079 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.175 0.825 34 H 0.181 0.819 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.170 0.830 39 H 0.253 0.747 40 H 0.044 0.956 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.064 0.936 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.796 27.393 -11.505 32.758 hybrid contribution -1.714 -0.729 1.175 2.203 sum -15.510 26.664 -10.329 32.530 Atomic orbital electron populations 1.23398 0.76749 1.05181 1.02714 1.86350 1.23149 1.26866 1.86986 1.19434 0.91274 0.85675 0.93004 1.21508 1.01396 0.91248 1.09260 1.21467 0.94283 0.97738 0.92943 1.20121 0.93938 0.96239 1.03093 1.20796 1.00961 0.91400 1.03272 1.21290 1.00908 0.89482 0.94910 1.19321 0.91105 0.93562 1.15789 1.18574 0.82156 0.89263 0.75544 1.90816 1.72378 1.30875 1.50562 1.45501 1.05338 1.08944 1.75505 1.21774 0.90319 0.87650 0.95619 0.90638 1.21920 0.88159 0.94257 0.95201 1.44595 1.20058 1.40134 1.30707 1.20060 0.98106 1.11597 1.14970 0.93931 1.27316 1.00248 0.97844 1.01686 1.71013 1.35453 1.13824 1.39992 0.83440 0.72388 0.73958 0.76706 1.23635 1.19645 1.17840 1.22569 0.95135 0.96656 0.89493 1.23158 0.92938 0.98717 0.81837 0.86620 1.87954 1.58428 1.66213 1.18562 1.23161 0.90478 0.94156 1.00097 0.90976 0.90737 0.87823 0.82472 0.81917 0.90430 0.90587 0.89980 0.83021 0.74683 0.95635 0.93541 0.94445 0.93850 0.94171 0.91117 0.93611 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.81 113.37 1.11 1.35 16 2 O -0.32 -9.38 8.57 -68.77 -0.59 -9.97 16 3 C 0.15 3.88 6.70 22.84 0.15 4.04 16 4 C -0.22 -3.49 9.03 22.34 0.20 -3.29 16 5 C -0.05 -0.55 9.68 22.30 0.22 -0.34 16 6 C -0.13 -1.72 5.87 -19.89 -0.12 -1.84 16 7 C -0.11 -0.71 10.00 71.24 0.71 0.01 16 8 C -0.05 -0.82 9.18 22.52 0.21 -0.61 16 9 C -0.19 -5.07 5.89 -20.01 -0.12 -5.19 16 10 C 0.56 18.81 7.76 86.69 0.67 19.48 16 11 O -0.57 -25.04 14.91 16.92 0.25 -24.79 16 12 N -0.70 -20.35 5.18 -439.11 -2.28 -22.62 16 13 C 0.15 5.69 3.04 46.38 0.14 5.83 16 14 H 0.08 3.33 7.73 -2.39 -0.02 3.31 16 15 C 0.13 5.86 6.93 86.86 0.60 6.46 16 16 N -0.63 -32.55 3.33 -691.97 -2.30 -34.86 16 17 C -0.32 -19.76 10.56 84.03 0.89 -18.88 16 18 H 0.04 2.87 8.06 -2.91 -0.02 2.85 16 19 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 20 N -0.96 -64.14 13.71 21.65 0.30 -63.85 16 21 Si 1.11 54.19 24.52 68.60 1.68 55.87 16 22 H -0.31 -15.35 7.11 99.48 0.71 -14.64 16 23 H -0.27 -11.85 6.82 99.48 0.68 -11.17 16 24 H -0.25 -11.08 5.41 99.48 0.54 -10.54 16 25 C 0.09 3.77 4.40 86.73 0.38 4.15 16 26 C 0.09 3.04 3.05 31.79 0.10 3.14 16 27 H 0.12 2.82 7.68 -2.39 -0.02 2.81 16 28 O -0.39 -12.15 10.45 -148.98 -1.56 -13.70 16 29 C 0.02 0.34 10.85 113.37 1.23 1.57 16 30 H 0.07 0.93 7.66 -2.38 -0.02 0.91 16 31 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.16 1.67 6.30 -2.91 -0.02 1.65 16 34 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 35 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.08 0.40 8.08 -2.39 -0.02 0.38 16 37 H 0.08 0.31 8.08 -2.39 -0.02 0.29 16 38 H 0.15 1.80 6.40 -2.91 -0.02 1.78 16 39 H 0.41 8.30 6.54 -92.71 -0.61 7.69 16 40 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.25 16.68 8.73 -92.71 -0.81 15.87 16 43 H 0.04 1.85 3.89 -2.38 -0.01 1.84 16 44 H 0.04 1.93 6.62 -2.39 -0.02 1.91 16 45 H 0.07 1.00 8.11 -2.39 -0.02 0.98 16 46 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -89.58 376.70 2.50 -87.08 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.15 Total: 15.37 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.84 Total: 11.47 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -4.28 Total: -121.33 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -1.89 Total: -48.46 kcal Atomic # 14 Polarization: 54.19 SS G_CDS: 1.68 Total: 55.87 kcal Total: -89.58 2.50 -87.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081911834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.527 kcal (2) G-P(sol) polarization free energy of solvation -89.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds