Wall clock time and date at job start Tue Mar 31 2020 18:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35912 * 117.00099 * 2 1 4 4 C 1.38843 * 119.98366 * 359.97438 * 3 2 1 5 5 C 1.38251 * 120.23909 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.90000 * 180.02562 * 5 4 3 7 7 C 1.38010 * 120.20359 * 0.04448 * 5 4 3 8 8 C 1.39562 * 119.96542 * 359.97438 * 7 5 4 9 9 C 1.47863 * 120.11429 * 180.02562 * 8 7 5 10 10 O 1.21552 * 119.99401 * 173.57252 * 9 8 7 11 11 N 1.34777 * 120.00033 * 353.57508 * 9 8 7 12 12 C 1.46501 * 119.99588 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.88925 * 31.11495 * 12 11 9 14 14 C 1.55136 * 111.22194 * 267.20182 * 12 11 9 15 15 N 1.47425 * 104.72354 * 279.17951 * 14 12 11 16 16 C 1.36932 * 125.64747 * 155.81748 * 15 14 12 17 17 H 1.07996 * 120.00116 * 5.60598 * 16 15 14 18 18 C 1.38813 * 120.00110 * 185.60306 * 16 15 14 19 19 N 1.31623 * 119.99589 * 7.37292 * 18 16 15 20 20 Si 1.86791 * 120.00014 * 187.10033 * 18 16 15 21 21 H 1.48507 * 109.47017 * 265.28455 * 20 18 16 22 22 H 1.48504 * 109.47595 * 25.28670 * 20 18 16 23 23 H 1.48507 * 109.47304 * 145.29050 * 20 18 16 24 24 C 1.47027 * 108.70177 * 335.55314 * 15 14 12 25 25 C 1.54326 * 107.27035 * 1.28905 * 24 15 14 26 26 H 1.09004 * 110.71652 * 263.82804 * 25 24 15 27 27 O 1.42895 * 110.72089 * 140.73441 * 25 24 15 28 28 C 1.38453 * 119.98371 * 180.27342 * 3 2 1 29 29 C 1.50696 * 120.10511 * 0.02562 * 28 3 2 30 30 H 1.08998 * 109.47387 * 300.00825 * 1 2 3 31 31 H 1.09007 * 109.46459 * 60.00313 * 1 2 3 32 32 H 1.08993 * 109.46958 * 180.02562 * 1 2 3 33 33 H 1.08001 * 119.88363 * 359.97438 * 4 3 2 34 34 H 1.09000 * 109.46720 * 270.02572 * 6 5 4 35 35 H 1.09001 * 109.46552 * 30.02003 * 6 5 4 36 36 H 1.08994 * 109.47463 * 150.02067 * 6 5 4 37 37 H 1.08000 * 120.01604 * 179.97438 * 7 5 4 38 38 H 0.96997 * 120.00217 * 359.97438 * 11 9 8 39 39 H 1.08995 * 110.49213 * 160.33572 * 14 12 11 40 40 H 1.08995 * 110.34026 * 37.94835 * 14 12 11 41 41 H 0.96999 * 119.99714 * 179.73043 * 19 18 16 42 42 H 1.08995 * 109.87847 * 120.70237 * 24 15 14 43 43 H 1.08995 * 109.87795 * 241.71452 * 24 15 14 44 44 H 0.96702 * 114.00201 * 61.45010 * 27 25 24 45 45 H 1.09002 * 109.47527 * 263.46793 * 29 28 3 46 46 H 1.09003 * 109.47347 * 23.46911 * 29 28 3 47 47 H 1.09003 * 109.47284 * 143.46425 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2896 2.3752 -0.0005 5 6 1.9117 3.6098 0.0000 6 6 1.0832 4.8686 0.0000 7 6 3.2893 3.6931 0.0001 8 6 4.0581 2.5282 0.0003 9 6 5.5342 2.6136 0.0010 10 8 6.2012 1.6043 0.1190 11 7 6.1401 3.8105 -0.1291 12 6 7.6027 3.8948 -0.1289 13 1 8.0440 2.9937 -0.5546 14 6 8.1498 4.1580 1.2987 15 7 7.9895 5.6097 1.4997 16 6 7.8858 6.2411 2.7103 17 1 8.0096 5.6796 3.6245 18 6 7.6214 7.6028 2.7625 19 7 7.3272 8.2588 1.6600 20 14 7.6758 8.5027 4.3985 21 1 6.3079 8.5690 4.9727 22 1 8.5707 7.7753 5.3342 23 1 8.1921 9.8793 4.1893 24 6 7.9659 6.2678 0.1852 25 6 8.0867 5.1611 -0.8836 26 1 9.1221 5.0465 -1.2047 27 8 7.2411 5.4425 -2.0006 28 6 3.4287 1.2830 -0.0057 29 6 4.2514 0.0204 -0.0125 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 0.2112 2.3162 -0.0014 34 1 0.8834 5.1720 -1.0277 35 1 0.1400 4.6826 0.5138 36 1 1.6267 5.6614 0.5139 37 1 3.7722 4.6591 0.0001 38 1 5.6078 4.6158 -0.2236 39 1 9.2019 3.8803 1.3613 40 1 7.5665 3.6062 2.0357 41 1 7.1386 9.2095 1.6970 42 1 7.0268 6.8060 0.0569 43 1 8.8039 6.9598 0.1020 44 1 7.4567 6.2658 -2.4596 45 1 4.5521 -0.2229 1.0065 46 1 3.6582 -0.7976 -0.4214 47 1 5.1390 0.1684 -0.6278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083606418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:45 Heat of formation + Delta-G solvation = -66.604754 kcal Electronic energy + Delta-G solvation = -29672.238436 eV Core-core repulsion = 25628.322414 eV Total energy + Delta-G solvation = -4043.916022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.64245 -39.43381 -38.02572 -37.15686 -35.07740 -33.97720 -33.37897 -31.85442 -30.35119 -29.15964 -28.34427 -27.68325 -27.08561 -25.03726 -24.42875 -23.33431 -21.52787 -20.51833 -20.13390 -19.70127 -17.88022 -17.02025 -16.88280 -16.54225 -16.07570 -15.95561 -15.64073 -15.53751 -14.76578 -14.61962 -14.09381 -14.02897 -13.88681 -13.63432 -13.18340 -13.04231 -12.90530 -12.64793 -12.58190 -12.42420 -12.25821 -11.99808 -11.85516 -11.81093 -11.57568 -11.46279 -11.26381 -10.96113 -10.92504 -10.88124 -10.71242 -10.18694 -10.12065 -9.86966 -9.34323 -9.27864 -8.85321 -8.73246 -8.42996 -8.09056 -6.90270 -5.78133 -3.13930 0.89474 1.37349 3.04049 3.07169 3.35853 3.42204 3.43946 3.62613 3.90208 4.41517 4.58250 4.60359 4.73086 4.87530 4.92933 4.94995 5.10658 5.16315 5.23235 5.26501 5.39695 5.43337 5.51178 5.54191 5.56907 5.64706 5.66417 5.80270 5.86062 5.99946 6.05409 6.11976 6.17162 6.25092 6.38092 6.42693 6.48383 6.54569 6.60935 6.76662 7.03878 7.21509 7.27278 7.48020 7.68593 7.98445 8.07694 8.16747 8.61401 9.12258 9.73162 10.37125 11.31471 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012743 B = 0.003449 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.747385 B = 8116.834833 C = 8961.420666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.114 3.886 4 C -0.185 4.185 5 C -0.062 4.062 6 C -0.115 4.115 7 C -0.112 4.112 8 C -0.092 4.092 9 C 0.557 3.443 10 O -0.542 6.542 11 N -0.683 5.683 12 C 0.142 3.858 13 H 0.095 0.905 14 C 0.122 3.878 15 N -0.599 5.599 16 C -0.226 4.226 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.281 1.281 23 H -0.290 1.290 24 C 0.142 3.858 25 C 0.065 3.935 26 H 0.066 0.934 27 O -0.562 6.562 28 C -0.060 4.060 29 C -0.107 4.107 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.132 0.868 38 H 0.407 0.593 39 H 0.034 0.966 40 H 0.051 0.949 41 H 0.252 0.748 42 H 0.074 0.926 43 H 0.033 0.967 44 H 0.377 0.623 45 H 0.071 0.929 46 H 0.057 0.943 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.349 -10.231 -7.510 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.069 3.931 4 C -0.204 4.204 5 C -0.063 4.063 6 C -0.172 4.172 7 C -0.131 4.131 8 C -0.095 4.095 9 C 0.345 3.655 10 O -0.422 6.422 11 N -0.333 5.333 12 C 0.035 3.965 13 H 0.113 0.887 14 C -0.005 4.005 15 N -0.326 5.326 16 C -0.354 4.354 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.206 1.206 23 H -0.217 1.217 24 C 0.017 3.983 25 C 0.005 3.995 26 H 0.084 0.916 27 O -0.367 6.367 28 C -0.062 4.062 29 C -0.164 4.164 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.147 0.853 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.150 0.850 38 H 0.244 0.756 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.051 0.949 44 H 0.224 0.776 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.075 -11.460 -7.167 18.125 hybrid contribution -0.259 1.825 0.742 1.987 sum -12.334 -9.636 -6.425 16.919 Atomic orbital electron populations 1.23040 0.78705 1.03787 1.01247 1.86078 1.20978 1.26537 1.88988 1.18602 0.91492 0.84237 0.98786 1.21194 0.99809 0.91730 1.07622 1.19574 0.93599 0.94700 0.98395 1.20814 0.99109 0.94663 1.02574 1.21203 0.93251 0.97955 1.00665 1.19616 0.93283 0.92832 1.03736 1.18068 0.86943 0.83614 0.76909 1.90688 1.66128 1.34702 1.50653 1.45444 1.07242 1.08790 1.71813 1.22228 0.80190 0.97288 0.96754 0.88740 1.22084 0.97584 0.87352 0.93456 1.44310 1.86246 0.99828 1.02222 1.19065 1.41497 0.91313 0.83496 0.90365 1.24779 1.01544 0.96706 0.97338 1.69912 1.53161 1.08389 1.25467 0.86104 0.77659 0.79172 0.82861 1.21641 1.20631 1.21661 1.21954 1.02228 0.91302 0.82864 1.23506 0.92594 0.96348 0.87065 0.91612 1.86414 1.59459 1.45736 1.45069 1.19274 0.90398 0.95629 1.00890 1.20851 0.99540 0.92565 1.03405 0.92728 0.92772 0.88330 0.85343 0.90893 0.91634 0.90729 0.85015 0.75639 0.94880 0.93106 0.93784 0.90795 0.94900 0.77589 0.91079 0.92409 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.76 9.43 -19.46 -0.18 -3.94 16 3 C 0.11 1.54 6.65 -39.28 -0.26 1.28 16 4 C -0.18 -2.19 8.68 -39.35 -0.34 -2.54 16 5 C -0.06 -0.79 5.87 -104.70 -0.61 -1.40 16 6 C -0.11 -1.14 10.01 36.01 0.36 -0.78 16 7 C -0.11 -1.64 9.17 -39.17 -0.36 -2.00 16 8 C -0.09 -1.49 5.87 -104.99 -0.62 -2.11 16 9 C 0.56 10.17 7.70 -12.32 -0.09 10.07 16 10 O -0.54 -10.75 13.00 5.32 0.07 -10.68 16 11 N -0.68 -12.43 4.77 -52.55 -0.25 -12.68 16 12 C 0.14 2.64 3.31 -65.66 -0.22 2.42 16 13 H 0.09 1.71 7.54 -51.93 -0.39 1.32 16 14 C 0.12 2.57 6.95 -2.41 -0.02 2.55 16 15 N -0.60 -14.64 3.39 -169.93 -0.58 -15.22 16 16 C -0.23 -6.12 10.26 -15.06 -0.15 -6.27 16 17 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 18 C -0.01 -0.21 5.45 -17.43 -0.09 -0.30 16 19 N -0.92 -25.70 10.46 55.49 0.58 -25.12 16 20 Si 0.91 21.66 29.56 -169.99 -5.02 16.64 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.14 3.18 5.21 -3.06 -0.02 3.16 16 25 C 0.07 1.16 4.11 -24.90 -0.10 1.06 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 27 O -0.56 -9.04 12.69 -35.23 -0.45 -9.48 16 28 C -0.06 -0.93 5.93 -104.07 -0.62 -1.55 16 29 C -0.11 -1.61 8.55 36.00 0.31 -1.30 16 30 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 31 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.13 1.16 6.28 -52.49 -0.33 0.83 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 36 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 37 H 0.13 1.91 6.45 -52.49 -0.34 1.57 16 38 H 0.41 7.38 6.46 -40.82 -0.26 7.11 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.07 1.84 6.79 -51.93 -0.35 1.48 16 43 H 0.03 0.80 7.97 -51.93 -0.41 0.39 16 44 H 0.38 4.65 9.11 45.56 0.42 5.06 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 0.77 7.34 -51.93 -0.38 0.39 16 47 H 0.09 1.53 5.89 -51.93 -0.31 1.22 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -31.88 378.47 -8.06 -39.94 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.08 Total: 11.34 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.85 Total: 3.50 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.25 Total: -53.02 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.56 Total: -24.10 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.88 -8.06 -39.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083606418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.668 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds