Wall clock time and date at job start Tue Mar 31 2020 19:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35716 * 116.99859 * 2 1 4 4 C 1.39015 * 119.91288 * 359.97438 * 3 2 1 5 5 C 1.37683 * 120.08854 * 179.76030 * 4 3 2 6 6 C 1.39752 * 119.90855 * 0.49436 * 5 4 3 7 7 C 1.47600 * 120.09007 * 179.78539 * 6 5 4 8 8 O 1.21581 * 120.00451 * 179.72207 * 7 6 5 9 9 N 1.34777 * 119.99613 * 359.72310 * 7 6 5 10 10 C 1.46505 * 119.99962 * 179.72862 * 9 7 6 11 11 H 1.09001 * 109.45745 * 324.99596 * 10 9 7 12 12 C 1.53035 * 109.46309 * 84.97128 * 10 9 7 13 13 C 1.53198 * 109.31265 * 181.39040 * 12 10 9 14 14 N 1.46930 * 108.77160 * 305.35984 * 13 12 10 15 15 C 1.36937 * 120.63174 * 233.58759 * 14 13 12 16 16 H 1.07997 * 119.99723 * 27.68642 * 15 14 13 17 17 C 1.38801 * 120.00042 * 207.68767 * 15 14 13 18 18 N 1.31625 * 120.00128 * 17.36643 * 17 15 14 19 19 Si 1.86801 * 120.00074 * 197.36661 * 17 15 14 20 20 H 1.48503 * 109.47050 * 90.00155 * 19 17 15 21 21 H 1.48502 * 109.47289 * 210.00029 * 19 17 15 22 22 H 1.48499 * 109.47051 * 329.99976 * 19 17 15 23 23 C 1.46928 * 118.73629 * 53.61124 * 14 13 12 24 24 C 1.53040 * 109.45991 * 205.02732 * 10 9 7 25 25 H 1.09006 * 109.49471 * 298.56326 * 24 10 9 26 26 O 1.42904 * 109.49786 * 58.65623 * 24 10 9 27 27 C 1.39717 * 119.82612 * 359.50681 * 6 5 4 28 28 C 1.37727 * 119.90953 * 0.25862 * 27 6 5 29 29 C 1.50696 * 119.95449 * 180.02562 * 28 27 6 30 30 H 1.09002 * 109.47401 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47224 * 300.00426 * 1 2 3 32 32 H 1.09010 * 109.47059 * 59.99863 * 1 2 3 33 33 H 1.08005 * 119.95658 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.04753 * 180.25104 * 5 4 3 35 35 H 0.96997 * 120.00559 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.49595 * 301.33285 * 12 10 9 37 37 H 1.08988 * 109.50085 * 61.40252 * 12 10 9 38 38 H 1.09000 * 109.59013 * 65.14729 * 13 12 10 39 39 H 1.08997 * 109.58484 * 185.57638 * 13 12 10 40 40 H 0.97003 * 120.00182 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.58344 * 66.17817 * 23 14 13 42 42 H 1.08997 * 109.58582 * 186.60011 * 23 14 13 43 43 H 0.96704 * 113.99638 * 179.97438 * 26 24 10 44 44 H 1.08001 * 120.04710 * 180.23162 * 27 6 5 45 45 H 1.08999 * 109.47284 * 89.99813 * 29 28 27 46 46 H 1.09001 * 109.47102 * 209.99683 * 29 28 27 47 47 H 1.09000 * 109.47432 * 329.99497 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2862 2.3740 -0.0005 5 6 1.9074 3.6026 0.0044 6 6 3.3029 3.6779 -0.0004 7 6 3.9731 4.9930 0.0001 8 8 5.1872 5.0567 0.0010 9 7 3.2390 6.1233 -0.0004 10 6 3.9041 7.4287 0.0062 11 1 4.8163 7.3685 0.5999 12 6 4.2550 7.8294 -1.4285 13 6 4.9811 9.1783 -1.4146 14 7 4.1481 10.1563 -0.7016 15 6 3.8156 11.3484 -1.2876 16 1 3.7538 11.4227 -2.3632 17 6 3.5579 12.4613 -0.4991 18 7 3.9533 12.4844 0.7562 19 14 2.6500 13.9264 -1.2193 20 1 1.1893 13.7525 -1.0155 21 1 3.0998 15.1692 -0.5423 22 1 2.9390 14.0221 -2.6728 23 6 3.6792 9.8311 0.6524 24 6 2.9677 8.4749 0.6150 25 1 2.0660 8.5535 0.0076 26 8 2.6158 8.0844 1.9438 27 6 4.0621 2.5050 0.0001 28 6 3.4330 1.2798 0.0001 29 6 4.2509 0.0140 0.0012 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8901 33 1 0.2077 2.3149 -0.0005 34 1 1.3172 4.5071 0.0081 35 1 2.2704 6.0726 -0.0014 36 1 4.9031 7.0720 -1.8695 37 1 3.3413 7.9136 -2.0166 38 1 5.9385 9.0727 -0.9044 39 1 5.1453 9.5154 -2.4381 40 1 3.7730 13.2620 1.3073 41 1 4.5305 9.7788 1.3311 42 1 2.9846 10.5989 0.9927 43 1 2.0229 8.7034 2.3916 44 1 5.1408 2.5590 0.0002 45 1 4.4472 -0.2907 1.0292 46 1 3.7010 -0.7743 -0.5127 47 1 5.1960 0.1916 -0.5119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090642300.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:11 Heat of formation + Delta-G solvation = -77.812080 kcal Electronic energy + Delta-G solvation = -28855.076227 eV Core-core repulsion = 24810.674219 eV Total energy + Delta-G solvation = -4044.402008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.73338 -39.65075 -38.10255 -37.12411 -35.27228 -34.41118 -33.24784 -32.08328 -30.66169 -29.39797 -28.84624 -28.02074 -26.93932 -25.21937 -23.49466 -22.31488 -22.11600 -21.63896 -20.07687 -19.43658 -18.35986 -17.53414 -16.87808 -16.72671 -16.50482 -16.17993 -15.64011 -14.99750 -14.81954 -14.66609 -14.29350 -14.17257 -13.81756 -13.73873 -13.60820 -13.43383 -13.29243 -12.84382 -12.65724 -12.38631 -12.34877 -12.19263 -11.97844 -11.96494 -11.67310 -11.34517 -11.21798 -11.12007 -10.84933 -10.77809 -10.40751 -10.19842 -10.02594 -9.88072 -9.53600 -9.35074 -9.13829 -8.77266 -8.55268 -8.36721 -6.79225 -5.87708 -3.31267 0.76791 1.06604 2.86987 2.88606 3.31481 3.38014 3.39766 3.41173 3.76840 4.37928 4.40448 4.48581 4.57505 4.69141 4.75244 4.79743 4.98634 4.99767 5.08176 5.27474 5.28156 5.34670 5.40999 5.46681 5.47349 5.60566 5.62405 5.88898 5.91652 5.96838 6.01016 6.02182 6.09005 6.19932 6.23732 6.43572 6.45977 6.49190 6.71060 6.86103 6.91611 6.99511 7.11698 7.45075 7.71141 7.76645 8.09077 8.35207 8.45011 9.10545 9.73374 10.29654 11.20682 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024573 B = 0.002344 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.208036 B =11944.454277 C =12383.867019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.146 3.854 4 C -0.213 4.213 5 C -0.049 4.049 6 C -0.161 4.161 7 C 0.558 3.442 8 O -0.543 6.543 9 N -0.711 5.711 10 C 0.162 3.838 11 H 0.089 0.911 12 C -0.139 4.139 13 C 0.145 3.855 14 N -0.589 5.589 15 C -0.255 4.255 16 H 0.069 0.931 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.278 1.278 23 C 0.148 3.852 24 C 0.072 3.928 25 H 0.051 0.949 26 O -0.573 6.573 27 C -0.024 4.024 28 C -0.127 4.127 29 C -0.104 4.104 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.395 0.605 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.024 0.976 39 H 0.061 0.939 40 H 0.255 0.745 41 H 0.030 0.970 42 H 0.094 0.906 43 H 0.376 0.624 44 H 0.143 0.857 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.466 -23.260 -0.643 24.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.100 3.900 4 C -0.232 4.232 5 C -0.068 4.068 6 C -0.165 4.165 7 C 0.346 3.654 8 O -0.422 6.422 9 N -0.360 5.360 10 C 0.059 3.941 11 H 0.107 0.893 12 C -0.179 4.179 13 C 0.018 3.982 14 N -0.313 5.313 15 C -0.384 4.384 16 H 0.087 0.913 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.203 1.203 23 C 0.021 3.979 24 C 0.011 3.989 25 H 0.069 0.931 26 O -0.377 6.377 27 C -0.043 4.043 28 C -0.128 4.128 29 C -0.160 4.160 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.229 0.771 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.112 0.888 43 H 0.222 0.778 44 H 0.161 0.839 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.135 -23.745 -0.676 24.803 hybrid contribution -1.745 1.521 -0.119 2.318 sum -8.880 -22.224 -0.796 23.946 Atomic orbital electron populations 1.23113 0.78177 1.04092 1.01632 1.86027 1.21512 1.26841 1.88094 1.19065 0.91822 0.84207 0.94907 1.21129 1.00192 0.91958 1.09888 1.21098 0.93439 0.97480 0.94814 1.19949 0.93557 0.93926 1.09037 1.18103 0.86991 0.83871 0.76461 1.90765 1.13469 1.87475 1.50461 1.46019 1.09930 1.05879 1.74193 1.21009 0.96340 0.79822 0.96958 0.89314 1.22416 1.01207 0.99379 0.94945 1.20948 0.92569 0.87759 0.96926 1.44024 1.56464 1.16319 1.14529 1.19220 1.41464 0.86179 0.91563 0.91318 1.25080 1.00722 0.97282 0.96604 1.70035 1.47214 1.29976 1.07388 0.86258 0.79703 0.82049 0.78582 1.21437 1.21697 1.20340 1.21421 0.97858 0.91454 0.87161 1.22986 0.97004 0.96515 0.82407 0.93084 1.86424 1.70530 1.51898 1.28871 1.21024 1.00722 0.89473 0.93069 1.19213 0.90506 0.96230 1.06838 1.20607 0.98911 0.94036 1.02477 0.88119 0.92401 0.92433 0.84892 0.85273 0.77060 0.91722 0.92039 0.95767 0.92080 0.93479 0.95190 0.88788 0.77771 0.83899 0.91263 0.91155 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.80 9.52 -18.85 -0.18 -2.98 16 3 C 0.15 1.50 6.67 -39.02 -0.26 1.24 16 4 C -0.21 -2.01 9.01 -39.50 -0.36 -2.37 16 5 C -0.05 -0.53 9.53 -39.22 -0.37 -0.90 16 6 C -0.16 -2.15 5.87 -104.96 -0.62 -2.76 16 7 C 0.56 9.14 7.73 -12.44 -0.10 9.04 16 8 O -0.54 -10.74 16.00 5.29 0.08 -10.65 16 9 N -0.71 -11.04 4.87 -54.79 -0.27 -11.30 16 10 C 0.16 2.98 2.11 -67.89 -0.14 2.83 16 11 H 0.09 1.88 7.58 -51.93 -0.39 1.48 16 12 C -0.14 -2.54 5.65 -26.61 -0.15 -2.69 16 13 C 0.14 3.06 6.52 -3.71 -0.02 3.04 16 14 N -0.59 -14.40 2.99 -172.32 -0.52 -14.92 16 15 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 16 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 17 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 18 N -0.90 -25.46 11.19 55.49 0.62 -24.84 16 19 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 C 0.15 3.42 4.94 -3.71 -0.02 3.40 16 24 C 0.07 1.34 3.14 -26.61 -0.08 1.25 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 26 O -0.57 -9.77 13.16 -35.23 -0.46 -10.23 16 27 C -0.02 -0.30 9.23 -39.22 -0.36 -0.66 16 28 C -0.13 -1.38 5.89 -104.54 -0.62 -2.00 16 29 C -0.10 -0.89 9.78 36.00 0.35 -0.54 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 32 H 0.06 0.26 7.65 -51.92 -0.40 -0.14 16 33 H 0.13 0.91 6.28 -52.48 -0.33 0.58 16 34 H 0.13 1.15 6.40 -52.49 -0.34 0.81 16 35 H 0.39 5.13 6.62 -40.82 -0.27 4.86 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.09 8.14 -51.94 -0.42 0.66 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 1.25 7.93 -51.93 -0.41 0.83 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 2.36 6.04 -51.93 -0.31 2.04 16 43 H 0.38 5.10 9.08 45.56 0.41 5.52 16 44 H 0.14 1.77 7.64 -52.49 -0.40 1.37 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.57 7.52 -51.93 -0.39 0.18 16 47 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 LS Contribution 380.69 15.07 5.74 5.74 Total: -1.00 -32.75 380.69 -8.15 -40.91 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -6.15 Total: 9.22 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.99 Total: 3.04 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.16 Total: -51.06 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.56 Total: -23.87 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.75 -8.15 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090642300.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.906 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds