Wall clock time and date at job start Tue Mar 31 2020 19:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35716 * 116.99859 * 2 1 4 4 C 1.39015 * 119.91288 * 359.97438 * 3 2 1 5 5 C 1.37683 * 120.08854 * 179.76030 * 4 3 2 6 6 C 1.39752 * 119.90855 * 0.49436 * 5 4 3 7 7 C 1.47600 * 120.09007 * 179.78539 * 6 5 4 8 8 O 1.21581 * 120.00451 * 179.72207 * 7 6 5 9 9 N 1.34777 * 119.99613 * 359.72310 * 7 6 5 10 10 C 1.46505 * 119.99962 * 179.72862 * 9 7 6 11 11 H 1.09001 * 109.45745 * 324.99596 * 10 9 7 12 12 C 1.53035 * 109.46309 * 84.97128 * 10 9 7 13 13 C 1.53198 * 109.31265 * 181.39040 * 12 10 9 14 14 N 1.46930 * 108.77160 * 305.35984 * 13 12 10 15 15 C 1.36937 * 120.63174 * 233.58759 * 14 13 12 16 16 H 1.07997 * 119.99723 * 27.68642 * 15 14 13 17 17 C 1.38801 * 120.00042 * 207.68767 * 15 14 13 18 18 N 1.31625 * 120.00128 * 17.36643 * 17 15 14 19 19 Si 1.86801 * 120.00074 * 197.36661 * 17 15 14 20 20 H 1.48503 * 109.47050 * 90.00155 * 19 17 15 21 21 H 1.48502 * 109.47289 * 210.00029 * 19 17 15 22 22 H 1.48499 * 109.47051 * 329.99976 * 19 17 15 23 23 C 1.46928 * 118.73629 * 53.61124 * 14 13 12 24 24 C 1.53040 * 109.45991 * 205.02732 * 10 9 7 25 25 H 1.09006 * 109.49471 * 298.56326 * 24 10 9 26 26 O 1.42904 * 109.49786 * 58.65623 * 24 10 9 27 27 C 1.39717 * 119.82612 * 359.50681 * 6 5 4 28 28 C 1.37727 * 119.90953 * 0.25862 * 27 6 5 29 29 C 1.50696 * 119.95449 * 180.02562 * 28 27 6 30 30 H 1.09002 * 109.47401 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47224 * 300.00426 * 1 2 3 32 32 H 1.09010 * 109.47059 * 59.99863 * 1 2 3 33 33 H 1.08005 * 119.95658 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.04753 * 180.25104 * 5 4 3 35 35 H 0.96997 * 120.00559 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.49595 * 301.33285 * 12 10 9 37 37 H 1.08988 * 109.50085 * 61.40252 * 12 10 9 38 38 H 1.09000 * 109.59013 * 65.14729 * 13 12 10 39 39 H 1.08997 * 109.58484 * 185.57638 * 13 12 10 40 40 H 0.97003 * 120.00182 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.58344 * 66.17817 * 23 14 13 42 42 H 1.08997 * 109.58582 * 186.60011 * 23 14 13 43 43 H 0.96704 * 113.99638 * 179.97438 * 26 24 10 44 44 H 1.08001 * 120.04710 * 180.23162 * 27 6 5 45 45 H 1.08999 * 109.47284 * 89.99813 * 29 28 27 46 46 H 1.09001 * 109.47102 * 209.99683 * 29 28 27 47 47 H 1.09000 * 109.47432 * 329.99497 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2862 2.3740 -0.0005 5 6 1.9074 3.6026 0.0044 6 6 3.3029 3.6779 -0.0004 7 6 3.9731 4.9930 0.0001 8 8 5.1872 5.0567 0.0010 9 7 3.2390 6.1233 -0.0004 10 6 3.9041 7.4287 0.0062 11 1 4.8163 7.3685 0.5999 12 6 4.2550 7.8294 -1.4285 13 6 4.9811 9.1783 -1.4146 14 7 4.1481 10.1563 -0.7016 15 6 3.8156 11.3484 -1.2876 16 1 3.7538 11.4227 -2.3632 17 6 3.5579 12.4613 -0.4991 18 7 3.9533 12.4844 0.7562 19 14 2.6500 13.9264 -1.2193 20 1 1.1893 13.7525 -1.0155 21 1 3.0998 15.1692 -0.5423 22 1 2.9390 14.0221 -2.6728 23 6 3.6792 9.8311 0.6524 24 6 2.9677 8.4749 0.6150 25 1 2.0660 8.5535 0.0076 26 8 2.6158 8.0844 1.9438 27 6 4.0621 2.5050 0.0001 28 6 3.4330 1.2798 0.0001 29 6 4.2509 0.0140 0.0012 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8901 33 1 0.2077 2.3149 -0.0005 34 1 1.3172 4.5071 0.0081 35 1 2.2704 6.0726 -0.0014 36 1 4.9031 7.0720 -1.8695 37 1 3.3413 7.9136 -2.0166 38 1 5.9385 9.0727 -0.9044 39 1 5.1453 9.5154 -2.4381 40 1 3.7730 13.2620 1.3073 41 1 4.5305 9.7788 1.3311 42 1 2.9846 10.5989 0.9927 43 1 2.0229 8.7034 2.3916 44 1 5.1408 2.5590 0.0002 45 1 4.4472 -0.2907 1.0292 46 1 3.7010 -0.7743 -0.5127 47 1 5.1960 0.1916 -0.5119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090642300.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:10 Heat of formation + Delta-G solvation = -101.351103 kcal Electronic energy + Delta-G solvation = -28856.096956 eV Core-core repulsion = 24810.674219 eV Total energy + Delta-G solvation = -4045.422737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.64738 -40.80869 -39.49049 -38.07833 -36.90242 -35.88840 -34.32123 -33.62669 -31.75214 -30.93329 -30.46852 -28.52925 -27.84100 -26.88741 -24.77947 -23.86812 -23.23632 -22.86677 -21.39914 -20.95261 -19.16955 -18.94688 -18.24696 -18.12702 -17.76277 -16.96496 -16.76457 -16.56260 -16.01007 -15.90419 -15.61084 -15.50603 -15.07763 -15.04993 -14.83550 -14.48012 -14.34544 -14.18583 -13.86827 -13.65714 -13.56284 -13.35836 -13.07168 -12.97977 -12.97082 -12.66902 -12.64400 -12.53964 -12.12516 -12.01122 -12.00228 -11.88690 -11.81361 -11.43483 -11.05773 -10.88886 -10.60770 -10.11998 -9.94013 -9.19876 -8.77694 -7.90953 -5.38365 -0.14473 0.26508 1.49001 1.50112 1.59462 1.81152 2.10301 2.28535 2.49548 2.78868 3.10145 3.26284 3.61319 3.66643 3.71600 3.78558 3.92053 4.04649 4.14020 4.19472 4.29854 4.39433 4.41715 4.43339 4.44581 4.49071 4.63841 4.69653 4.77578 4.82058 4.84759 4.88072 4.93467 5.03316 5.14577 5.15872 5.18862 5.24973 5.31641 5.37790 5.44953 5.55752 5.63696 5.65196 6.32675 6.32921 6.54755 6.82079 7.09461 7.21346 7.76724 8.30059 9.15820 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024573 B = 0.002344 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.208036 B =11944.454277 C =12383.867019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.321 6.321 3 C 0.149 3.851 4 C -0.208 4.208 5 C -0.044 4.044 6 C -0.185 4.185 7 C 0.557 3.443 8 O -0.587 6.587 9 N -0.699 5.699 10 C 0.170 3.830 11 H 0.055 0.945 12 C -0.123 4.123 13 C 0.142 3.858 14 N -0.604 5.604 15 C -0.265 4.265 16 H 0.073 0.927 17 C -0.049 4.049 18 N -0.935 5.935 19 Si 0.971 3.029 20 H -0.280 1.280 21 H -0.298 1.298 22 H -0.269 1.269 23 C 0.156 3.844 24 C 0.093 3.907 25 H 0.069 0.931 26 O -0.574 6.574 27 C -0.035 4.035 28 C -0.138 4.138 29 C -0.102 4.102 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.165 0.835 34 H 0.150 0.850 35 H 0.410 0.590 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.008 0.992 39 H 0.068 0.932 40 H 0.252 0.748 41 H -0.006 1.006 42 H 0.073 0.927 43 H 0.392 0.608 44 H 0.131 0.869 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.478 -24.965 -1.573 27.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.234 6.234 3 C 0.103 3.897 4 C -0.227 4.227 5 C -0.063 4.063 6 C -0.188 4.188 7 C 0.347 3.653 8 O -0.469 6.469 9 N -0.350 5.350 10 C 0.065 3.935 11 H 0.073 0.927 12 C -0.163 4.163 13 C 0.016 3.984 14 N -0.329 5.329 15 C -0.394 4.394 16 H 0.091 0.909 17 C -0.244 4.244 18 N -0.581 5.581 19 Si 0.799 3.201 20 H -0.207 1.207 21 H -0.225 1.225 22 H -0.194 1.194 23 C 0.029 3.971 24 C 0.032 3.968 25 H 0.087 0.913 26 O -0.380 6.380 27 C -0.054 4.054 28 C -0.138 4.138 29 C -0.158 4.158 30 H 0.139 0.861 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.183 0.817 34 H 0.167 0.833 35 H 0.248 0.752 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.026 0.974 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.012 0.988 42 H 0.091 0.909 43 H 0.242 0.758 44 H 0.149 0.851 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.197 -25.484 -1.613 27.496 hybrid contribution -0.821 1.926 0.206 2.104 sum -11.018 -23.558 -1.407 26.045 Atomic orbital electron populations 1.23453 0.76026 1.05930 1.02665 1.86030 1.23712 1.26132 1.87544 1.19221 0.91771 0.85142 0.93594 1.21446 1.01747 0.90956 1.08506 1.21297 0.92254 0.98978 0.93777 1.19756 0.94794 0.92150 1.12120 1.18608 0.86558 0.84944 0.75229 1.90738 1.15480 1.88128 1.52542 1.45764 1.10616 1.04594 1.73985 1.20683 0.95217 0.81262 0.96379 0.92709 1.22205 1.01473 0.97450 0.95155 1.21041 0.91975 0.88759 0.96661 1.44271 1.57231 1.16515 1.14888 1.19557 1.40896 0.87037 0.91959 0.90908 1.25848 1.01672 0.99927 0.96986 1.70196 1.48627 1.30598 1.08690 0.85214 0.78516 0.78316 0.78059 1.20662 1.22495 1.19376 1.21233 0.96330 0.93458 0.86030 1.22554 0.96886 0.93840 0.83529 0.91337 1.86405 1.71080 1.52307 1.28241 1.21006 1.00365 0.90148 0.93924 1.19407 0.91457 0.96235 1.06726 1.20631 0.98953 0.93244 1.03012 0.86109 0.91353 0.91287 0.81723 0.83277 0.75212 0.91241 0.90516 0.97381 0.91366 0.93907 0.98773 0.90897 0.75820 0.85074 0.90670 0.90560 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -4.83 9.52 -90.38 -0.86 -5.69 16 3 C 0.15 2.70 6.67 22.63 0.15 2.85 16 4 C -0.21 -3.25 9.01 22.32 0.20 -3.05 16 5 C -0.04 -0.84 9.53 22.50 0.21 -0.63 16 6 C -0.18 -4.78 5.87 -20.08 -0.12 -4.90 16 7 C 0.56 18.24 7.73 86.71 0.67 18.91 16 8 O -0.59 -24.05 16.00 -3.97 -0.06 -24.11 16 9 N -0.70 -21.02 4.87 -445.51 -2.17 -23.19 16 10 C 0.17 6.21 2.11 45.02 0.10 6.31 16 11 H 0.05 2.41 7.58 -2.39 -0.02 2.39 16 12 C -0.12 -4.42 5.65 30.67 0.17 -4.25 16 13 C 0.14 6.08 6.52 86.36 0.56 6.64 16 14 N -0.60 -29.97 2.99 -699.10 -2.09 -32.06 16 15 C -0.26 -14.11 9.58 84.03 0.81 -13.31 16 16 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 17 C -0.05 -2.64 4.91 84.86 0.42 -2.22 16 18 N -0.94 -54.01 11.19 21.65 0.24 -53.77 16 19 Si 0.97 43.27 29.59 68.60 2.03 45.30 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 C 0.16 7.40 4.94 86.36 0.43 7.83 16 24 C 0.09 3.41 3.14 30.67 0.10 3.51 16 25 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 26 O -0.57 -18.99 13.16 -148.98 -1.96 -20.95 16 27 C -0.04 -0.88 9.23 22.51 0.21 -0.67 16 28 C -0.14 -2.83 5.89 -19.81 -0.12 -2.95 16 29 C -0.10 -1.64 9.78 71.23 0.70 -0.95 16 30 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.07 0.34 7.65 -2.39 -0.02 0.32 16 32 H 0.07 0.33 7.65 -2.38 -0.02 0.31 16 33 H 0.17 1.47 6.28 -2.91 -0.02 1.45 16 34 H 0.15 2.12 6.40 -2.91 -0.02 2.10 16 35 H 0.41 9.68 6.62 -92.71 -0.61 9.07 16 36 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 37 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.07 2.78 7.93 -2.39 -0.02 2.76 16 40 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 41 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 42 H 0.07 3.75 6.04 -2.39 -0.01 3.73 16 43 H 0.39 10.15 9.08 -74.05 -0.67 9.47 16 44 H 0.13 3.44 7.64 -2.91 -0.02 3.42 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.08 1.13 7.52 -2.39 -0.02 1.11 16 47 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 Total: -1.00 -72.61 380.69 0.44 -72.18 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: -0.28 Total: 27.97 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 5.59 Total: 14.33 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -4.02 Total: -109.02 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -2.88 Total: -50.76 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -72.61 0.44 -72.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090642300.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.175 kcal (2) G-P(sol) polarization free energy of solvation -72.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds