Wall clock time and date at job start Tue Mar 31 2020 19:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35654 * 116.99588 * 2 1 4 4 C 1.38706 * 120.15661 * 0.23260 * 3 2 1 5 5 C 1.38051 * 120.08723 * 180.27909 * 4 3 2 6 6 C 1.50699 * 119.80412 * 179.76508 * 5 4 3 7 7 C 1.38549 * 120.39052 * 359.73902 * 5 4 3 8 8 C 1.37789 * 120.29990 * 0.02562 * 7 5 4 9 9 C 1.39715 * 119.90514 * 359.97438 * 8 7 5 10 10 C 1.47535 * 120.18669 * 179.97438 * 9 8 7 11 11 O 1.21586 * 119.99736 * 180.02562 * 10 9 8 12 12 N 1.34776 * 120.00277 * 359.97438 * 10 9 8 13 13 C 1.46501 * 120.00264 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.45737 * 325.03166 * 13 12 10 15 15 C 1.53033 * 109.45995 * 84.99972 * 13 12 10 16 16 C 1.53196 * 109.31405 * 58.65577 * 15 13 12 17 17 N 1.46930 * 108.77199 * 54.63584 * 16 15 13 18 18 C 1.36933 * 120.63005 * 126.11515 * 17 16 15 19 19 H 1.08001 * 120.00321 * 331.87101 * 18 17 16 20 20 C 1.38815 * 119.99826 * 151.86766 * 18 17 16 21 21 N 1.31621 * 119.99984 * 343.17890 * 20 18 17 22 22 Si 1.86800 * 120.00122 * 163.17569 * 20 18 17 23 23 H 1.48504 * 109.46788 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47041 * 119.99977 * 22 20 18 25 25 H 1.48497 * 109.47258 * 240.00106 * 22 20 18 26 26 C 1.46923 * 118.73796 * 306.39091 * 17 16 15 27 27 C 1.53031 * 109.46086 * 205.07144 * 13 12 10 28 28 H 1.09005 * 109.49738 * 181.36086 * 27 13 12 29 29 O 1.42903 * 109.50230 * 61.29560 * 27 13 12 30 30 H 1.09006 * 109.47262 * 299.99641 * 1 2 3 31 31 H 1.09000 * 109.47349 * 60.00155 * 1 2 3 32 32 H 1.09001 * 109.47442 * 179.97438 * 1 2 3 33 33 H 1.08000 * 119.95646 * 359.97438 * 4 3 2 34 34 H 1.08999 * 109.47505 * 269.97627 * 6 5 4 35 35 H 1.09001 * 109.47392 * 29.98002 * 6 5 4 36 36 H 1.09003 * 109.47115 * 149.97597 * 6 5 4 37 37 H 1.07997 * 119.85113 * 180.02562 * 7 5 4 38 38 H 1.07998 * 120.04555 * 180.02562 * 8 7 5 39 39 H 0.97004 * 119.99784 * 0.02562 * 12 10 9 40 40 H 1.09004 * 109.50103 * 298.70653 * 15 13 12 41 41 H 1.09001 * 109.52989 * 178.62461 * 15 13 12 42 42 H 1.08998 * 109.58579 * 294.85221 * 16 15 13 43 43 H 1.08997 * 109.58701 * 174.42032 * 16 15 13 44 44 H 0.97002 * 120.00123 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.59186 * 173.39498 * 26 17 16 46 46 H 1.08997 * 109.58930 * 293.82211 * 26 17 16 47 47 H 0.96697 * 114.00073 * 179.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3740 0.0049 5 6 1.9205 3.6034 -0.0010 6 6 1.0969 4.8653 -0.0010 7 6 3.3037 3.6837 -0.0062 8 6 4.0667 2.5364 -0.0063 9 6 3.4440 1.2857 -0.0004 10 6 4.2550 0.0532 -0.0010 11 8 3.7095 -1.0334 0.0037 12 7 5.6004 0.1318 -0.0077 13 6 6.4057 -1.0920 -0.0088 14 1 5.9046 -1.8569 0.5844 15 6 6.5739 -1.5903 -1.4459 16 6 7.2474 -0.4997 -2.2848 17 7 8.5036 -0.1083 -1.6309 18 6 9.6859 -0.1305 -2.3213 19 1 9.8195 -0.8203 -3.1415 20 6 10.7128 0.7337 -1.9670 21 7 10.4599 1.7820 -1.2124 22 14 12.4538 0.4089 -2.5612 23 1 12.4723 -0.8239 -3.3889 24 1 12.9212 1.5588 -3.3763 25 1 13.3515 0.2339 -1.3914 26 6 8.4679 0.3014 -0.2204 27 6 7.7807 -0.7982 0.5953 28 1 8.3888 -1.7025 0.5726 29 8 7.6245 -0.3622 1.9472 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 0.2138 2.3195 0.0083 34 1 0.8944 5.1671 -1.0286 35 1 0.1549 4.6845 0.5168 36 1 1.6455 5.6573 0.5089 37 1 3.7860 4.6500 -0.0104 38 1 5.1446 2.6039 -0.0100 39 1 6.0356 0.9987 -0.0117 40 1 5.5957 -1.8216 -1.8677 41 1 7.1933 -2.4873 -1.4505 42 1 6.5880 0.3653 -2.3568 43 1 7.4592 -0.8845 -3.2823 44 1 11.1774 2.3862 -0.9652 45 1 9.4850 0.4452 0.1442 46 1 7.9082 1.2317 -0.1241 47 1 8.4577 -0.1581 2.3934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090739304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:35 Heat of formation + Delta-G solvation = -72.710891 kcal Electronic energy + Delta-G solvation = -29866.123473 eV Core-core repulsion = 25821.942669 eV Total energy + Delta-G solvation = -4044.180804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.58408 -39.31143 -37.73068 -37.43921 -35.24916 -33.98687 -33.03657 -31.73926 -30.23952 -29.61453 -28.85782 -28.04832 -26.88271 -25.25058 -22.83951 -22.39369 -22.10050 -21.66952 -20.49413 -18.62242 -18.19673 -17.10639 -16.85052 -16.51277 -16.28201 -15.84832 -15.21884 -14.91060 -14.80913 -14.46644 -14.42254 -13.99915 -13.85422 -13.82013 -13.66573 -13.37015 -13.25323 -12.69652 -12.46853 -12.30297 -12.20532 -12.09698 -11.81829 -11.62563 -11.53488 -11.24163 -11.04817 -11.02113 -10.96639 -10.84397 -10.38742 -10.18487 -9.98605 -9.61497 -9.39497 -9.26963 -8.96093 -8.62019 -8.47485 -8.19339 -6.76462 -5.88867 -3.32183 0.87003 1.35380 3.10690 3.21627 3.31345 3.40286 3.42411 3.60705 3.95972 4.40746 4.51857 4.62217 4.67846 4.88259 4.96844 5.02180 5.05502 5.21744 5.26648 5.34656 5.36051 5.40201 5.43699 5.49800 5.52561 5.57372 5.76786 5.87413 5.88320 5.97715 6.08162 6.08631 6.21227 6.30345 6.41309 6.51727 6.52721 6.64215 6.75657 6.85741 7.04859 7.09177 7.33600 7.41498 7.71779 8.03370 8.13250 8.35496 8.72231 9.10232 9.73002 10.29299 11.19313 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016062 B = 0.003222 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.838335 B = 8687.479552 C = 9502.993245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.278 6.278 3 C 0.185 3.815 4 C -0.225 4.225 5 C -0.026 4.026 6 C -0.118 4.118 7 C -0.167 4.167 8 C -0.039 4.039 9 C -0.170 4.170 10 C 0.559 3.441 11 O -0.533 6.533 12 N -0.704 5.704 13 C 0.167 3.833 14 H 0.078 0.922 15 C -0.145 4.145 16 C 0.146 3.854 17 N -0.588 5.588 18 C -0.253 4.253 19 H 0.068 0.932 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.147 3.853 27 C 0.066 3.934 28 H 0.061 0.939 29 O -0.572 6.572 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.401 0.599 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.021 0.979 43 H 0.056 0.944 44 H 0.254 0.746 45 H 0.092 0.908 46 H 0.023 0.977 47 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.365 3.408 4.351 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.189 6.189 3 C 0.137 3.863 4 C -0.244 4.244 5 C -0.027 4.027 6 C -0.174 4.174 7 C -0.185 4.185 8 C -0.058 4.058 9 C -0.174 4.174 10 C 0.346 3.654 11 O -0.411 6.411 12 N -0.356 5.356 13 C 0.063 3.937 14 H 0.097 0.903 15 C -0.185 4.185 16 C 0.019 3.981 17 N -0.312 5.312 18 C -0.383 4.383 19 H 0.086 0.914 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.733 3.267 23 H -0.202 1.202 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.020 3.980 27 C 0.005 3.995 28 H 0.079 0.921 29 O -0.377 6.377 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.149 0.851 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.238 0.762 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.039 0.961 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.041 0.959 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -18.173 2.436 4.255 18.823 hybrid contribution 1.566 0.633 -0.173 1.698 sum -16.607 3.069 4.082 17.375 Atomic orbital electron populations 1.23125 0.79202 1.04082 1.00938 1.86403 1.20341 1.25433 1.86742 1.19008 0.90964 0.84691 0.91659 1.21031 0.99926 0.91520 1.11924 1.19850 0.94022 0.94529 0.94288 1.20866 0.99297 0.94596 1.02682 1.20881 0.92941 0.98673 1.05999 1.21276 1.00285 0.90755 0.93478 1.19445 0.90785 0.94380 1.12820 1.17907 0.82184 0.88415 0.76926 1.90766 1.71787 1.28611 1.49965 1.45884 1.05272 1.10282 1.74166 1.20769 0.89908 0.86730 0.96321 0.90345 1.22401 1.00744 1.00236 0.95104 1.20926 0.87996 0.94227 0.94912 1.43962 1.02723 1.78302 1.06226 1.19250 0.90219 1.14348 1.14435 0.91414 1.25057 0.99320 0.94953 1.00240 1.70021 1.31246 1.12794 1.40628 0.86216 0.84717 0.77725 0.78087 1.20201 1.21679 1.21542 1.21385 1.00763 0.91905 0.83948 1.22949 0.95417 0.99337 0.81758 0.92065 1.86429 1.35586 1.89593 1.26045 0.92819 0.92790 0.88144 0.85092 0.90658 0.91464 0.91006 0.85245 0.84642 0.76179 0.91667 0.91210 0.96134 0.92512 0.93614 0.88980 0.95884 0.77849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.28 -4.22 8.57 -40.54 -0.35 -4.57 16 3 C 0.18 2.72 6.70 -38.70 -0.26 2.47 16 4 C -0.23 -2.58 8.67 -39.48 -0.34 -2.93 16 5 C -0.03 -0.28 5.88 -104.58 -0.62 -0.90 16 6 C -0.12 -0.85 10.00 36.01 0.36 -0.49 16 7 C -0.17 -1.93 9.67 -39.63 -0.38 -2.31 16 8 C -0.04 -0.54 9.54 -39.19 -0.37 -0.91 16 9 C -0.17 -2.74 5.89 -104.84 -0.62 -3.36 16 10 C 0.56 10.46 7.73 -12.47 -0.10 10.36 16 11 O -0.53 -11.41 14.82 -16.59 -0.25 -11.66 16 12 N -0.70 -12.76 4.10 -54.82 -0.22 -12.99 16 13 C 0.17 3.16 2.47 -67.90 -0.17 2.99 16 14 H 0.08 1.55 7.57 -51.93 -0.39 1.16 16 15 C -0.14 -2.70 5.77 -26.61 -0.15 -2.86 16 16 C 0.15 3.04 6.26 -3.71 -0.02 3.02 16 17 N -0.59 -13.99 2.99 -172.32 -0.52 -14.50 16 18 C -0.25 -6.66 9.58 -15.06 -0.14 -6.80 16 19 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 20 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -24.76 11.20 55.49 0.62 -24.13 16 22 Si 0.90 20.93 29.59 -169.99 -5.03 15.90 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.15 3.24 4.64 -3.71 -0.02 3.22 16 27 C 0.07 1.25 3.36 -26.61 -0.09 1.16 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 O -0.57 -10.00 13.21 -35.23 -0.47 -10.47 16 30 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 31 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.13 1.15 6.30 -52.49 -0.33 0.82 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 36 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.14 1.80 6.40 -52.49 -0.34 1.46 16 39 H 0.40 7.10 4.90 -40.82 -0.20 6.90 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 43 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 44 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 45 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 46 H 0.02 0.53 6.64 -51.93 -0.34 0.19 16 47 H 0.37 5.22 9.08 45.56 0.41 5.64 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -32.59 375.76 -8.60 -41.19 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.04 Total: 11.72 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -2.02 Total: 3.85 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.12 Total: -51.63 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -1.06 Total: -26.69 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.59 -8.60 -41.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090739304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.522 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds