Wall clock time and date at job start Tue Mar 31 2020 19:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38162 * 120.02938 * 2 1 4 4 C 1.38249 * 120.05709 * 179.76933 * 3 2 1 5 5 C 1.38290 * 120.10797 * 0.51344 * 4 3 2 6 6 C 1.38124 * 120.05471 * 359.74620 * 5 4 3 7 7 C 1.38712 * 120.02709 * 180.28433 * 2 1 3 8 8 O 1.35903 * 120.05495 * 359.97438 * 7 2 1 9 9 C 1.42897 * 116.99646 * 180.02562 * 8 7 2 10 10 C 1.50702 * 109.46877 * 179.97438 * 9 8 7 11 11 O 1.21286 * 119.99965 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00139 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99887 * 180.02562 * 12 10 9 14 14 H 1.08995 * 109.46319 * 324.97196 * 13 12 10 15 15 C 1.53038 * 109.46079 * 84.93385 * 13 12 10 16 16 C 1.53186 * 109.31492 * 181.38107 * 15 13 12 17 17 N 1.46931 * 108.77885 * 305.36614 * 16 15 13 18 18 C 1.36930 * 120.63210 * 233.63026 * 17 16 15 19 19 H 1.07999 * 120.00163 * 27.66103 * 18 17 16 20 20 C 1.38810 * 119.99980 * 207.66528 * 18 17 16 21 21 N 1.31621 * 120.00052 * 17.36061 * 20 18 17 22 22 Si 1.86805 * 119.99992 * 197.35825 * 20 18 17 23 23 H 1.48495 * 109.46971 * 60.00062 * 22 20 18 24 24 H 1.48509 * 109.46880 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47121 * 299.99814 * 22 20 18 26 26 C 1.46932 * 118.73493 * 53.60625 * 17 16 15 27 27 C 1.53047 * 109.45825 * 204.99979 * 13 12 10 28 28 H 1.09002 * 109.49679 * 58.63344 * 27 13 12 29 29 O 1.42895 * 109.49646 * 298.56647 * 27 13 12 30 30 H 1.09001 * 109.46823 * 269.72420 * 1 2 3 31 31 H 1.08989 * 109.47272 * 149.72442 * 1 2 3 32 32 H 1.08996 * 109.47205 * 29.71365 * 1 2 3 33 33 H 1.08004 * 119.97251 * 0.02854 * 3 2 1 34 34 H 1.07994 * 119.94506 * 180.25316 * 4 3 2 35 35 H 1.08002 * 119.96800 * 179.76757 * 5 4 3 36 36 H 1.08001 * 120.02170 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.47521 * 299.99666 * 9 8 7 38 38 H 1.09002 * 109.47306 * 60.00193 * 9 8 7 39 39 H 0.96996 * 119.99973 * 359.97438 * 12 10 9 40 40 H 1.08994 * 109.49857 * 301.33536 * 15 13 12 41 41 H 1.09009 * 109.49978 * 61.43382 * 15 13 12 42 42 H 1.09000 * 109.59394 * 185.57548 * 16 15 13 43 43 H 1.09003 * 109.58828 * 65.15078 * 16 15 13 44 44 H 0.97005 * 120.00196 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.58258 * 186.60862 * 26 17 16 46 46 H 1.08997 * 109.58555 * 66.17759 * 26 17 16 47 47 H 0.96703 * 113.99684 * 179.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 0.0048 5 6 4.2753 0.0009 -0.0011 6 6 3.5886 -1.1976 -0.0065 7 6 2.2012 -1.2009 -0.0060 8 8 1.5233 -2.3789 -0.0113 9 6 2.3034 -3.5761 -0.0167 10 6 1.3871 -4.7726 -0.0215 11 8 0.1845 -4.6154 -0.0208 12 7 1.9040 -6.0173 -0.0275 13 6 1.0133 -7.1803 -0.0327 14 1 0.1245 -6.9597 0.5585 15 6 0.6016 -7.5009 -1.4714 16 6 -0.3569 -8.6958 -1.4699 17 7 0.2819 -9.8136 -0.7618 18 6 0.3961 -11.0419 -1.3561 19 1 0.4484 -11.1184 -2.4321 20 6 0.4447 -12.1887 -0.5756 21 7 0.0460 -12.1489 0.6782 22 14 1.0759 -13.7886 -1.3046 23 1 2.4771 -13.6057 -1.7610 24 1 1.0272 -14.8559 -0.2730 25 1 0.2258 -14.1760 -2.4588 26 6 0.7961 -9.5881 0.5960 27 6 1.7418 -8.3832 0.5713 28 1 2.0557 -8.1456 1.5877 29 8 2.8891 -8.6935 -0.2220 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3633 -0.8874 -0.5180 32 1 -0.3633 0.8925 -0.5094 33 1 1.6585 2.1315 0.0005 34 1 4.1195 2.1329 0.0089 35 1 5.3553 0.0041 -0.0011 36 1 4.1314 -2.1313 -0.0115 37 1 2.9322 -3.5961 -0.9068 38 1 2.9322 -3.6041 0.8732 39 1 2.8658 -6.1430 -0.0291 40 1 0.1036 -6.6356 -1.9087 41 1 1.4876 -7.7459 -2.0573 42 1 -0.5752 -8.9906 -2.4963 43 1 -1.2815 -8.4220 -0.9617 44 1 0.0802 -12.9503 1.2237 45 1 1.3387 -10.4715 0.9326 46 1 -0.0345 -9.3869 1.2726 47 1 3.4000 -9.4473 0.1033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100094907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:49 Heat of formation + Delta-G solvation = -96.200474 kcal Electronic energy + Delta-G solvation = -28670.311115 eV Core-core repulsion = 24625.111726 eV Total energy + Delta-G solvation = -4045.199389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.56315 -40.80747 -39.48330 -38.19085 -36.49493 -35.75295 -33.99359 -33.72207 -31.68517 -31.00132 -30.74879 -29.26965 -27.62485 -26.78366 -24.25118 -23.72404 -23.06743 -22.49118 -21.46034 -20.97235 -19.18776 -19.14651 -18.21652 -17.48681 -17.39509 -17.10137 -16.92574 -16.58428 -16.39397 -15.72179 -15.66962 -15.41921 -15.26013 -15.18355 -14.92348 -14.56903 -14.27698 -14.00157 -13.80503 -13.69327 -13.65886 -13.17560 -13.16120 -12.98132 -12.78949 -12.62515 -12.39598 -12.26850 -12.22938 -12.07721 -12.03476 -11.85357 -11.79696 -11.46578 -10.96195 -10.73665 -10.58059 -10.09411 -9.75596 -9.09024 -8.68834 -7.87875 -5.31822 0.39286 0.49363 1.46850 1.49323 1.50392 1.53294 1.58115 2.51944 2.65033 2.82671 3.24260 3.38203 3.52735 3.67900 3.83878 3.86542 3.96806 3.99130 4.01467 4.10068 4.23165 4.33323 4.38899 4.43221 4.43976 4.59091 4.66674 4.72207 4.77090 4.78507 4.85758 4.93342 4.99610 5.05312 5.17035 5.31435 5.40538 5.41374 5.43694 5.53398 5.55498 5.62397 5.64976 5.87071 6.35186 6.37045 6.53563 6.91681 7.14211 7.16329 7.82096 8.35155 9.18464 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032936 B = 0.002098 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.923742 B =13340.294230 C =13751.202842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.138 4.138 3 C -0.089 4.089 4 C -0.157 4.157 5 C -0.090 4.090 6 C -0.212 4.212 7 C 0.102 3.898 8 O -0.316 6.316 9 C 0.047 3.953 10 C 0.510 3.490 11 O -0.571 6.571 12 N -0.699 5.699 13 C 0.170 3.830 14 H 0.072 0.928 15 C -0.120 4.120 16 C 0.144 3.856 17 N -0.598 5.598 18 C -0.254 4.254 19 H 0.062 0.938 20 C -0.048 4.048 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.275 1.275 24 H -0.295 1.295 25 H -0.282 1.282 26 C 0.148 3.852 27 C 0.093 3.907 28 H 0.072 0.928 29 O -0.560 6.560 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.419 0.581 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.010 0.990 44 H 0.251 0.749 45 H 0.075 0.925 46 H 0.003 0.997 47 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.511 24.450 0.801 27.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.139 4.139 3 C -0.107 4.107 4 C -0.175 4.175 5 C -0.108 4.108 6 C -0.231 4.231 7 C 0.057 3.943 8 O -0.229 6.229 9 C -0.031 4.031 10 C 0.296 3.704 11 O -0.450 6.450 12 N -0.352 5.352 13 C 0.065 3.935 14 H 0.090 0.910 15 C -0.160 4.160 16 C 0.018 3.982 17 N -0.321 5.321 18 C -0.385 4.385 19 H 0.079 0.921 20 C -0.243 4.243 21 N -0.582 5.582 22 Si 0.796 3.204 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.208 1.208 26 C 0.022 3.978 27 C 0.031 3.969 28 H 0.090 0.910 29 O -0.367 6.367 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.166 0.834 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.256 0.744 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.027 0.973 44 H 0.060 0.940 45 H 0.093 0.907 46 H 0.021 0.979 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 11.212 24.893 0.556 27.307 hybrid contribution 0.424 -1.936 0.168 1.989 sum 11.636 22.958 0.724 25.748 Atomic orbital electron populations 1.20596 0.90637 1.02640 1.02300 1.19587 0.97016 0.91047 1.06233 1.21191 0.94846 0.96771 0.97845 1.21435 0.94048 0.99308 1.02724 1.21318 1.01218 0.91438 0.96829 1.21549 0.92010 1.01191 1.08312 1.19188 0.91533 0.85077 0.98531 1.86111 1.35575 1.12228 1.89026 1.22573 0.92817 0.81302 1.06443 1.20670 0.88932 0.84903 0.75860 1.90737 1.17468 1.86429 1.50360 1.45775 1.11392 1.03872 1.74199 1.20709 0.92357 0.83343 0.97061 0.90973 1.22074 1.00042 0.97472 0.96415 1.20971 0.93085 0.87949 0.96239 1.44105 1.66235 1.07132 1.14618 1.19382 1.43691 0.83851 0.91531 0.92052 1.25715 1.01084 1.00451 0.97060 1.70161 1.50324 1.28846 1.08867 0.85336 0.78772 0.79207 0.77048 1.20050 1.22127 1.20807 1.21351 0.94607 0.96037 0.85842 1.22480 0.87161 0.93905 0.93312 0.91002 1.86309 1.39537 1.54354 1.56458 0.91474 0.93229 0.89884 0.83432 0.83416 0.83195 0.83394 0.86269 0.85994 0.74367 0.92615 0.91334 0.92567 0.97254 0.93987 0.90725 0.97905 0.76371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 9.79 71.24 0.70 -1.43 16 2 C -0.14 -2.85 5.89 -19.77 -0.12 -2.97 16 3 C -0.09 -1.36 9.70 22.25 0.22 -1.14 16 4 C -0.16 -2.01 10.04 22.28 0.22 -1.78 16 5 C -0.09 -1.17 10.04 22.25 0.22 -0.94 16 6 C -0.21 -3.39 9.04 22.36 0.20 -3.19 16 7 C 0.10 2.22 6.66 22.51 0.15 2.37 16 8 O -0.32 -8.20 8.71 -73.42 -0.64 -8.84 16 9 C 0.05 0.90 5.22 71.24 0.37 1.27 16 10 C 0.51 14.35 7.87 87.66 0.69 15.03 16 11 O -0.57 -22.14 16.16 15.99 0.26 -21.88 16 12 N -0.70 -18.12 5.05 -442.39 -2.23 -20.36 16 13 C 0.17 5.75 2.20 45.02 0.10 5.85 16 14 H 0.07 2.78 7.58 -2.39 -0.02 2.76 16 15 C -0.12 -4.44 5.51 30.67 0.17 -4.27 16 16 C 0.14 6.30 6.52 86.36 0.56 6.86 16 17 N -0.60 -29.51 2.94 -699.10 -2.05 -31.57 16 18 C -0.25 -13.72 9.58 84.03 0.81 -12.91 16 19 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 20 C -0.05 -2.59 4.91 84.86 0.42 -2.18 16 21 N -0.94 -53.37 11.19 21.65 0.24 -53.13 16 22 Si 0.97 43.64 29.59 68.60 2.03 45.67 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 C 0.15 6.71 4.95 86.36 0.43 7.14 16 27 C 0.09 3.13 3.38 30.67 0.10 3.23 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 O -0.56 -17.59 12.08 -148.98 -1.80 -19.39 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.24 7.53 -2.39 -0.02 1.22 16 32 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 33 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 36 H 0.15 1.61 6.30 -2.91 -0.02 1.60 16 37 H 0.12 1.63 7.66 -2.39 -0.02 1.61 16 38 H 0.12 1.58 7.66 -2.39 -0.02 1.56 16 39 H 0.42 8.25 8.26 -92.71 -0.77 7.48 16 40 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 41 H 0.07 2.58 7.61 -2.38 -0.02 2.56 16 42 H 0.06 2.42 7.93 -2.39 -0.02 2.41 16 43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.25 13.91 8.31 -92.70 -0.77 13.14 16 45 H 0.07 3.70 6.03 -2.39 -0.01 3.69 16 46 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.39 10.45 9.08 -74.06 -0.67 9.78 16 Total: -1.00 -72.98 383.17 0.60 -72.37 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -0.44 Total: 26.17 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 5.24 Total: 10.95 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -4.04 Total: -105.05 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -2.18 Total: -50.11 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -72.98 0.60 -72.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100094907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.830 kcal (2) G-P(sol) polarization free energy of solvation -72.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds