Wall clock time and date at job start Tue Mar 31 2020 19:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 116.99585 * 2 1 4 4 O 1.20832 * 120.00340 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99762 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.54658 * 299.99971 * 5 3 2 7 7 N 1.46502 * 109.46981 * 59.99581 * 6 5 3 8 8 C 1.38098 * 120.00238 * 179.97438 * 7 6 5 9 9 N 1.32269 * 119.90037 * 0.02562 * 8 7 6 10 10 C 1.31975 * 121.86129 * 179.97438 * 9 8 7 11 11 C 1.50705 * 119.27215 * 180.02562 * 10 9 8 12 12 C 1.38675 * 121.44772 * 359.97438 * 10 9 8 13 13 C 1.38008 * 119.62891 * 359.97438 * 12 10 9 14 14 C 1.40999 * 118.28203 * 359.74819 * 13 12 10 15 15 C 1.41023 * 120.70989 * 180.24883 * 14 13 12 16 16 H 1.07993 * 120.00169 * 154.91680 * 15 14 13 17 17 C 1.39943 * 119.99577 * 334.91537 * 15 14 13 18 18 N 1.30866 * 120.00274 * 343.58069 * 17 15 14 19 19 Si 1.86800 * 119.99870 * 163.57853 * 17 15 14 20 20 H 1.48500 * 109.47157 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47089 * 119.99734 * 19 17 15 22 22 H 1.48498 * 109.47368 * 240.00174 * 19 17 15 23 23 C 1.53182 * 109.54195 * 60.17966 * 5 3 2 24 24 C 1.53278 * 109.06099 * 176.85171 * 23 5 3 25 25 O 1.42903 * 109.46245 * 302.44410 * 24 23 5 26 26 C 1.42902 * 114.09962 * 61.15675 * 25 24 23 27 27 C 1.53089 * 109.41398 * 298.84541 * 26 25 24 28 28 H 1.08996 * 109.47570 * 59.99810 * 1 2 3 29 29 H 1.09008 * 109.46832 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47037 * 299.99656 * 1 2 3 31 31 H 1.09007 * 109.47034 * 300.00595 * 6 5 3 32 32 H 1.08990 * 109.47519 * 180.02562 * 6 5 3 33 33 H 0.97000 * 119.99758 * 0.28396 * 7 6 5 34 34 H 1.09002 * 109.46619 * 90.00515 * 11 10 9 35 35 H 1.09002 * 109.46731 * 209.99645 * 11 10 9 36 36 H 1.08995 * 109.47021 * 330.00395 * 11 10 9 37 37 H 1.08005 * 120.18651 * 180.02562 * 12 10 9 38 38 H 1.07995 * 120.85952 * 180.02562 * 13 12 10 39 39 H 0.97000 * 120.00427 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.51979 * 296.83647 * 23 5 3 41 41 H 1.08998 * 109.52129 * 57.02926 * 23 5 3 42 42 H 1.09001 * 109.45975 * 182.44781 * 24 23 5 43 43 H 1.08999 * 109.46991 * 62.44501 * 24 23 5 44 44 H 1.08994 * 109.48111 * 178.85591 * 26 25 24 45 45 H 1.09000 * 109.48569 * 58.83324 * 26 25 24 46 46 H 1.08992 * 109.52528 * 297.69682 * 27 26 25 47 47 H 1.09007 * 109.56795 * 177.54183 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1157 0.5816 1.2477 7 7 3.7012 -0.8236 1.2481 8 6 4.0814 -1.6554 2.2829 9 7 4.8194 -1.1812 3.2728 10 6 5.2040 -1.9412 4.2809 11 6 6.0438 -1.3400 5.3784 12 6 4.8515 -3.2805 4.3529 13 6 4.0814 -3.8380 3.3526 14 6 3.6730 -3.0123 2.2851 15 6 2.8806 -3.5275 1.2384 16 1 2.2466 -2.8670 0.6657 17 6 2.9160 -4.8948 0.9420 18 7 3.8933 -5.6376 1.3956 19 14 1.5682 -5.6594 -0.1011 20 1 0.5873 -4.6134 -0.4870 21 1 2.1655 -6.2526 -1.3246 22 1 0.8806 -6.7200 0.6783 23 6 4.1150 0.5851 -1.2534 24 6 5.6397 0.7402 -1.2830 25 8 5.9777 2.1284 -1.2540 26 6 5.5296 2.8137 -0.0828 27 6 4.0023 2.7433 -0.0050 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.7269 1.0753 2.1384 32 1 5.2040 0.6397 1.2463 33 1 3.1634 -1.1708 0.5193 34 1 5.3932 -0.9438 6.1580 35 1 6.6921 -2.1074 5.8015 36 1 6.6533 -0.5342 4.9695 37 1 5.1772 -3.8836 5.1875 38 1 3.7950 -4.8787 3.3888 39 1 3.9180 -6.5852 1.1898 40 1 3.8549 -0.4731 -1.2300 41 1 3.6848 1.0475 -2.1418 42 1 6.0329 0.2893 -2.1941 43 1 6.0724 0.2426 -0.4151 44 1 5.8436 3.8564 -0.1294 45 1 5.9608 2.3434 0.8009 46 1 3.5699 3.2492 -0.8681 47 1 3.6607 3.2275 0.9099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154678023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:03 Heat of formation + Delta-G solvation = -120.528496 kcal Electronic energy + Delta-G solvation = -30686.679879 eV Core-core repulsion = 26640.425548 eV Total energy + Delta-G solvation = -4046.254331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.27996 -40.45738 -40.10316 -37.65197 -37.03169 -35.93405 -34.64674 -32.54868 -32.21553 -31.22165 -29.49062 -29.09334 -27.58889 -26.10640 -25.35796 -24.63367 -22.76182 -22.54756 -22.45637 -20.15698 -19.08410 -18.70861 -18.34504 -17.75968 -17.35015 -17.20137 -16.91929 -16.65646 -16.15242 -15.90827 -15.56896 -15.50779 -15.32727 -14.84714 -14.64970 -14.37003 -14.12573 -13.96886 -13.90175 -13.63567 -13.41055 -13.28917 -13.15175 -13.06645 -12.92477 -12.80024 -12.53193 -12.41488 -12.38567 -12.12115 -11.85208 -11.80901 -11.71852 -11.54694 -11.29303 -11.06112 -10.66094 -10.42831 -9.91628 -9.72468 -8.60485 -8.25251 -6.07027 0.94388 1.00553 1.26410 1.42311 1.52587 1.55520 1.62003 2.24581 2.67802 2.86087 2.91789 3.41000 3.45610 3.54302 3.77475 3.82991 3.92247 4.19459 4.21266 4.23243 4.27199 4.29536 4.44240 4.55497 4.58564 4.62752 4.65082 4.69922 4.75056 4.77050 4.78978 4.96138 5.00436 5.00857 5.03606 5.09465 5.11831 5.22477 5.29735 5.31984 5.46825 5.83199 5.95520 6.18634 6.19637 6.44251 6.58320 6.81250 6.90691 6.96467 7.20191 7.97971 8.43329 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009282 B = 0.005223 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.912536 B = 5360.058272 C = 6853.908284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.475 3.525 4 O -0.528 6.528 5 C -0.059 4.059 6 C 0.161 3.839 7 N -0.718 5.718 8 C 0.303 3.697 9 N -0.540 5.540 10 C 0.021 3.979 11 C -0.068 4.068 12 C -0.200 4.200 13 C -0.146 4.146 14 C -0.002 4.002 15 C -0.472 4.472 16 H 0.081 0.919 17 C 0.036 3.964 18 N -0.832 5.832 19 Si 0.972 3.028 20 H -0.251 1.251 21 H -0.271 1.271 22 H -0.273 1.273 23 C -0.138 4.138 24 C 0.065 3.935 25 O -0.389 6.389 26 C 0.058 3.942 27 C -0.124 4.124 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.410 0.590 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.284 0.716 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.049 0.951 44 H 0.125 0.875 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.913 10.227 -4.653 11.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.274 6.274 3 C 0.319 3.681 4 O -0.417 6.417 5 C -0.060 4.060 6 C 0.036 3.964 7 N -0.360 5.360 8 C 0.065 3.935 9 N -0.259 5.259 10 C -0.114 4.114 11 C -0.126 4.126 12 C -0.222 4.222 13 C -0.172 4.172 14 C -0.009 4.009 15 C -0.504 4.504 16 H 0.099 0.901 17 C -0.178 4.178 18 N -0.460 5.460 19 Si 0.793 3.207 20 H -0.174 1.174 21 H -0.196 1.196 22 H -0.198 1.198 23 C -0.176 4.176 24 C -0.012 4.012 25 O -0.308 6.308 26 C -0.018 4.018 27 C -0.162 4.162 28 H 0.092 0.908 29 H 0.136 0.864 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.251 0.749 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.134 0.866 43 H 0.067 0.933 44 H 0.143 0.857 45 H 0.076 0.924 46 H 0.105 0.895 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.620 11.381 -4.737 12.343 hybrid contribution -1.534 -1.972 -0.178 2.505 sum -2.155 9.409 -4.915 10.832 Atomic orbital electron populations 1.23503 0.74932 1.05224 1.02615 1.86514 1.24949 1.32823 1.83075 1.23809 0.91958 0.81284 0.71040 1.90607 1.67531 1.36869 1.46722 1.20988 0.86699 0.99884 0.98464 1.20979 0.99365 0.82102 0.93964 1.43878 1.60121 1.07555 1.24443 1.18655 0.95893 0.89160 0.89814 1.66509 1.16833 1.39276 1.03325 1.20732 1.03387 0.90825 0.96427 1.20331 0.97573 1.00251 0.94416 1.21453 1.04110 0.96179 1.00461 1.21344 1.02243 0.99876 0.93777 1.18237 0.96558 0.90966 0.95096 1.19378 1.22651 0.93689 1.14658 0.90052 1.26592 0.97053 0.97478 0.96665 1.69889 1.28741 1.08005 1.39335 0.85302 0.78735 0.78689 0.77933 1.17411 1.19615 1.19794 1.22247 0.98128 1.01710 0.95532 1.22637 0.92628 0.82496 1.03428 1.87913 1.78401 1.21951 1.42488 1.22806 0.91489 0.99284 0.88206 1.22080 0.98025 0.91241 1.04890 0.90759 0.86398 0.92245 0.93840 0.91075 0.74943 0.91693 0.90879 0.92060 0.86864 0.87449 0.90600 0.89970 0.89325 0.86635 0.93315 0.85687 0.92442 0.89542 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.95 16 2 O -0.36 -11.19 8.12 -51.37 -0.42 -11.61 16 3 C 0.48 14.68 6.55 71.24 0.47 15.15 16 4 O -0.53 -17.57 15.72 21.95 0.34 -17.22 16 5 C -0.06 -1.62 0.50 -52.81 -0.03 -1.65 16 6 C 0.16 5.33 4.01 86.38 0.35 5.67 16 7 N -0.72 -28.70 4.80 -343.65 -1.65 -30.34 16 8 C 0.30 14.55 7.52 134.05 1.01 15.55 16 9 N -0.54 -25.21 9.44 -179.56 -1.70 -26.90 16 10 C 0.02 0.91 6.79 42.64 0.29 1.20 16 11 C -0.07 -2.29 10.15 71.24 0.72 -1.57 16 12 C -0.20 -9.35 9.69 22.32 0.22 -9.14 16 13 C -0.15 -7.63 8.79 22.89 0.20 -7.43 16 14 C 0.00 -0.08 5.59 -21.06 -0.12 -0.20 16 15 C -0.47 -23.71 8.51 23.37 0.20 -23.51 16 16 H 0.08 3.87 6.70 -2.91 -0.02 3.85 16 17 C 0.04 1.72 5.19 85.25 0.44 2.16 16 18 N -0.83 -42.45 10.95 21.83 0.24 -42.21 16 19 Si 0.97 36.53 29.59 68.60 2.03 38.56 16 20 H -0.25 -8.90 7.11 99.48 0.71 -8.20 16 21 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 23 C -0.14 -3.49 4.74 30.75 0.15 -3.34 16 24 C 0.06 1.56 6.57 72.08 0.47 2.04 16 25 O -0.39 -9.35 10.77 -148.98 -1.60 -10.95 16 26 C 0.06 1.21 6.57 72.01 0.47 1.68 16 27 C -0.12 -2.85 4.23 30.68 0.13 -2.72 16 28 H 0.07 1.61 8.13 -2.39 -0.02 1.59 16 29 H 0.12 2.56 8.14 -2.38 -0.02 2.54 16 30 H 0.06 1.49 8.13 -2.38 -0.02 1.47 16 31 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.07 2.35 5.01 -2.39 -0.01 2.34 16 33 H 0.41 16.22 3.57 -92.71 -0.33 15.89 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 38 H 0.11 5.87 6.26 -2.91 -0.02 5.85 16 39 H 0.28 13.21 8.30 -92.71 -0.77 12.44 16 40 H 0.08 2.28 6.80 -2.39 -0.02 2.27 16 41 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.05 1.34 6.60 -2.39 -0.02 1.32 16 44 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.06 1.24 6.60 -2.39 -0.02 1.22 16 46 H 0.09 1.96 8.03 -2.39 -0.02 1.94 16 47 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -62.62 372.06 4.08 -58.53 By element: Atomic # 1 Polarization: 45.63 SS G_CDS: 0.67 Total: 46.30 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 6.17 Total: -4.16 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -3.10 Total: -99.46 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -1.68 Total: -39.78 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Total: -62.62 4.08 -58.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154678023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.995 kcal (2) G-P(sol) polarization free energy of solvation -62.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds