Wall clock time and date at job start Tue Mar 31 2020 19:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38260 * 119.94216 * 2 1 4 4 C 1.38153 * 120.05292 * 180.02562 * 3 2 1 5 5 C 1.38730 * 119.94373 * 0.02562 * 4 3 2 6 6 O 1.35897 * 120.05625 * 180.02562 * 5 4 3 7 7 C 1.42904 * 116.99558 * 355.31811 * 6 5 4 8 8 H 1.09002 * 109.47554 * 322.79714 * 7 6 5 9 9 C 1.52998 * 109.47329 * 82.80013 * 7 6 5 10 10 C 1.50710 * 109.46748 * 202.79685 * 7 6 5 11 11 O 1.21278 * 120.00196 * 0.02562 * 10 7 6 12 12 N 1.34781 * 119.99617 * 179.97438 * 10 7 6 13 13 C 1.46500 * 119.99720 * 180.02562 * 12 10 7 14 14 H 1.08998 * 110.64188 * 31.85440 * 13 12 10 15 15 C 1.54337 * 110.99927 * 268.78417 * 13 12 10 16 16 N 1.47026 * 107.26289 * 219.60109 * 15 13 12 17 17 C 1.36938 * 125.64557 * 178.84526 * 16 15 13 18 18 H 1.08003 * 120.00484 * 346.98800 * 17 16 15 19 19 C 1.38819 * 119.99748 * 166.98436 * 17 16 15 20 20 N 1.31624 * 119.99977 * 345.88709 * 19 17 16 21 21 Si 1.86801 * 119.99792 * 165.88300 * 19 17 16 22 22 H 1.48501 * 109.46952 * 84.99340 * 21 19 17 23 23 H 1.48495 * 109.47114 * 324.99236 * 21 19 17 24 24 H 1.48498 * 109.46829 * 204.98750 * 21 19 17 25 25 C 1.47424 * 108.70392 * 358.58649 * 16 15 13 26 26 C 1.54907 * 104.83197 * 24.35346 * 25 16 15 27 27 H 1.08997 * 111.00432 * 81.07006 * 26 25 16 28 28 O 1.42905 * 111.00498 * 204.87876 * 26 25 16 29 29 C 1.38727 * 119.88736 * 0.26781 * 5 4 3 30 30 C 1.38146 * 119.94606 * 359.42896 * 29 5 4 31 31 H 1.08999 * 109.47358 * 89.99869 * 1 2 3 32 32 H 1.08997 * 109.46928 * 209.99886 * 1 2 3 33 33 H 1.08999 * 109.47055 * 329.99523 * 1 2 3 34 34 H 1.07997 * 119.97450 * 359.97438 * 3 2 1 35 35 H 1.08003 * 120.02582 * 179.97438 * 4 3 2 36 36 H 1.08993 * 109.47202 * 299.99680 * 9 7 6 37 37 H 1.09009 * 109.47223 * 59.99712 * 9 7 6 38 38 H 1.09002 * 109.47422 * 179.97438 * 9 7 6 39 39 H 0.96994 * 120.00180 * 0.02562 * 12 10 7 40 40 H 1.09004 * 109.99534 * 100.12563 * 15 13 12 41 41 H 1.09004 * 109.77960 * 338.95119 * 15 13 12 42 42 H 0.96995 * 119.99792 * 179.97438 * 20 19 17 43 43 H 1.08998 * 110.37066 * 143.19377 * 25 16 15 44 44 H 1.09000 * 110.36142 * 265.51821 * 25 16 15 45 45 H 0.96700 * 114.00197 * 298.54873 * 28 26 25 46 46 H 1.08000 * 120.02759 * 179.72535 * 29 5 4 47 47 H 1.08000 * 119.97292 * 180.27358 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2007 -0.0005 5 6 4.2734 0.0000 -0.0016 6 8 5.6324 -0.0001 -0.0016 7 6 6.2811 1.2691 -0.1044 8 1 5.7167 1.9120 -0.7799 9 6 6.3516 1.9194 1.2787 10 6 7.6763 1.0780 -0.6413 11 8 8.0755 -0.0352 -0.9099 12 7 8.4800 2.1445 -0.8239 13 6 9.8360 1.9588 -1.3463 14 1 9.8720 1.1094 -2.0284 15 6 10.8505 1.7738 -0.1981 16 7 12.0683 2.5093 -0.5692 17 6 13.2008 2.6143 0.1935 18 1 13.1819 2.3184 1.2321 19 6 14.3733 3.1010 -0.3682 20 7 14.4851 3.1992 -1.6760 21 14 15.7922 3.6165 0.7319 22 1 16.6149 2.4270 1.0686 23 1 15.2576 4.2180 1.9799 24 1 16.6320 4.6142 0.0216 25 6 11.8706 3.1099 -1.9009 26 6 10.3349 3.2489 -2.0492 27 1 9.9718 4.1390 -1.5356 28 8 9.9525 3.2636 -3.4260 29 6 3.5786 -1.2007 -0.0078 30 6 2.1971 -1.1981 -0.0009 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6557 2.1326 -0.0004 35 1 4.1173 2.1369 -0.0010 36 1 5.3426 2.0576 1.6670 37 1 6.9160 1.2764 1.9542 38 1 6.8468 2.8873 1.2004 39 1 8.1605 3.0348 -0.6094 40 1 11.0807 0.7160 -0.0709 41 1 10.4395 2.1797 0.7263 42 1 15.3042 3.5396 -2.0685 43 1 12.3466 4.0892 -1.9500 44 1 12.2687 2.4543 -2.6755 45 1 10.3232 4.0014 -3.9294 46 1 4.1172 -2.1368 -0.0131 47 1 1.6558 -2.1326 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198444457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:04 Heat of formation + Delta-G solvation = -68.120726 kcal Electronic energy + Delta-G solvation = -28456.121783 eV Core-core repulsion = 24412.140023 eV Total energy + Delta-G solvation = -4043.981759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.80944 -39.61426 -38.21265 -37.42150 -35.14213 -34.21573 -32.84831 -31.97050 -31.50181 -30.89934 -28.40243 -27.15716 -26.76965 -24.93056 -24.14399 -23.13397 -21.62880 -20.85287 -20.42080 -19.98569 -18.56500 -17.62118 -16.99534 -16.79257 -15.96736 -15.87263 -15.67780 -15.46108 -14.82331 -14.63108 -14.51438 -14.14815 -13.98402 -13.79976 -13.76570 -13.43355 -13.29231 -12.93714 -12.74157 -12.67832 -12.40735 -12.26533 -12.10672 -11.89574 -11.77446 -11.53850 -11.33290 -11.11381 -11.02207 -10.96694 -10.85156 -10.24767 -10.02980 -9.87046 -9.78127 -9.39600 -9.26095 -8.87377 -8.68079 -8.27378 -6.91486 -5.85747 -3.19277 1.07146 1.15917 2.49450 2.64218 3.35035 3.40743 3.42326 3.48522 3.51728 4.33359 4.39908 4.50957 4.52948 4.57817 4.59876 4.67575 4.72338 4.95997 5.06851 5.13682 5.17780 5.29230 5.33040 5.34890 5.37805 5.44648 5.52680 5.58445 5.61768 5.76194 5.77943 5.80591 6.01678 6.03831 6.06177 6.10102 6.33802 6.37165 6.51308 6.64612 6.83590 7.11796 7.17728 7.38085 7.56465 7.65128 8.00716 8.12760 8.27080 9.06121 9.68841 10.34585 11.27621 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028197 B = 0.002095 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.790984 B =13363.061515 C =13704.523321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.130 4.130 3 C -0.080 4.080 4 C -0.209 4.209 5 C 0.129 3.871 6 O -0.283 6.283 7 C 0.069 3.931 8 H 0.098 0.902 9 C -0.178 4.178 10 C 0.518 3.482 11 O -0.514 6.514 12 N -0.709 5.709 13 C 0.144 3.856 14 H 0.104 0.896 15 C 0.128 3.872 16 N -0.596 5.596 17 C -0.235 4.235 18 H 0.078 0.922 19 C -0.004 4.004 20 N -0.914 5.914 21 Si 0.912 3.088 22 H -0.286 1.286 23 H -0.281 1.281 24 H -0.289 1.289 25 C 0.150 3.850 26 C 0.067 3.933 27 H 0.062 0.938 28 O -0.564 6.564 29 C -0.146 4.146 30 C -0.080 4.080 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.398 0.602 40 H 0.035 0.965 41 H 0.031 0.969 42 H 0.255 0.745 43 H 0.066 0.934 44 H 0.045 0.955 45 H 0.378 0.622 46 H 0.133 0.867 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.157 0.348 2.517 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.130 4.130 3 C -0.098 4.098 4 C -0.228 4.228 5 C 0.084 3.916 6 O -0.196 6.196 7 C 0.008 3.992 8 H 0.115 0.885 9 C -0.236 4.236 10 C 0.302 3.698 11 O -0.388 6.388 12 N -0.362 5.362 13 C 0.039 3.961 14 H 0.122 0.878 15 C 0.002 3.998 16 N -0.324 5.324 17 C -0.363 4.363 18 H 0.096 0.904 19 C -0.201 4.201 20 N -0.560 5.560 21 Si 0.741 3.259 22 H -0.213 1.213 23 H -0.206 1.206 24 H -0.215 1.215 25 C 0.024 3.976 26 C 0.007 3.993 27 H 0.080 0.920 28 O -0.369 6.369 29 C -0.164 4.164 30 C -0.098 4.098 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.232 0.768 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.225 0.775 46 H 0.150 0.850 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -25.832 -1.122 2.476 25.975 hybrid contribution 1.014 1.443 0.441 1.818 sum -24.818 0.321 2.917 24.991 Atomic orbital electron populations 1.20710 0.91139 1.02558 1.02111 1.19831 0.96193 0.93095 1.03923 1.20813 0.93202 0.97688 0.98107 1.21317 0.95417 0.97166 1.08871 1.19088 0.82282 0.94318 0.95954 1.86230 1.15963 1.29863 1.87522 1.22203 0.92616 0.85355 0.98985 0.88454 1.22375 1.04078 1.01656 0.95444 1.19945 0.85945 0.85347 0.78569 1.90759 1.75019 1.23926 1.49122 1.45818 1.14702 1.09068 1.66568 1.22022 0.79638 0.98843 0.95584 0.87805 1.21663 0.87354 0.96413 0.94417 1.44281 1.12121 1.57889 1.18099 1.18984 0.86535 1.38681 0.92097 0.90412 1.24875 0.97286 1.02194 0.95785 1.69964 1.27113 1.50364 1.08557 0.86160 0.81932 0.78253 0.79535 1.21322 1.20622 1.21518 1.21958 0.87723 0.99379 0.88531 1.23571 0.98331 0.95800 0.81623 0.91982 1.86432 1.75118 1.53784 1.21593 1.20478 0.93726 0.96555 1.05678 1.20850 0.92892 0.97806 0.98284 0.91472 0.91720 0.91780 0.85845 0.85184 0.90653 0.90370 0.90070 0.76752 0.94682 0.95085 0.93506 0.91584 0.93720 0.77483 0.84954 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.01 36.01 0.36 -0.26 16 2 C -0.13 -1.08 5.88 -104.60 -0.62 -1.69 16 3 C -0.08 -0.67 9.69 -39.60 -0.38 -1.06 16 4 C -0.21 -2.00 8.16 -39.43 -0.32 -2.32 16 5 C 0.13 1.52 6.58 -39.22 -0.26 1.26 16 6 O -0.28 -3.95 9.34 -39.33 -0.37 -4.32 16 7 C 0.07 0.80 2.66 -27.88 -0.07 0.73 16 8 H 0.10 0.90 6.41 -51.93 -0.33 0.57 16 9 C -0.18 -1.61 9.02 37.16 0.34 -1.28 16 10 C 0.52 8.08 7.23 -10.98 -0.08 8.00 16 11 O -0.51 -10.50 16.14 -14.35 -0.23 -10.74 16 12 N -0.71 -10.25 5.01 -52.02 -0.26 -10.51 16 13 C 0.14 2.65 3.04 -66.09 -0.20 2.45 16 14 H 0.10 2.18 7.55 -51.93 -0.39 1.79 16 15 C 0.13 2.74 7.01 -3.05 -0.02 2.72 16 16 N -0.60 -14.93 3.39 -170.06 -0.58 -15.50 16 17 C -0.23 -6.44 10.20 -15.06 -0.15 -6.59 16 18 H 0.08 2.07 7.87 -52.48 -0.41 1.66 16 19 C 0.00 -0.11 5.33 -17.43 -0.09 -0.20 16 20 N -0.91 -26.22 11.00 55.49 0.61 -25.61 16 21 Si 0.91 21.58 29.58 -169.99 -5.03 16.55 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.15 3.45 5.11 -2.53 -0.01 3.44 16 26 C 0.07 1.19 4.06 -24.59 -0.10 1.09 16 27 H 0.06 0.98 8.01 -51.93 -0.42 0.57 16 28 O -0.56 -9.27 13.47 -35.23 -0.47 -9.74 16 29 C -0.15 -1.58 9.99 -39.43 -0.39 -1.97 16 30 C -0.08 -0.71 9.69 -39.61 -0.38 -1.09 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 33 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 34 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.13 1.00 5.37 -52.48 -0.28 0.72 16 36 H 0.07 0.58 6.72 -51.93 -0.35 0.23 16 37 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.08 0.58 7.56 -51.93 -0.39 0.19 16 39 H 0.40 4.37 7.98 -40.82 -0.33 4.05 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.07 1.62 7.28 -51.93 -0.38 1.24 16 44 H 0.04 1.16 7.98 -51.93 -0.41 0.74 16 45 H 0.38 4.66 9.11 45.56 0.42 5.08 16 46 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 47 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 385.89 15.07 5.82 5.82 Total: -1.00 -34.67 385.89 -9.12 -43.79 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.21 Total: 7.03 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -2.40 Total: 3.23 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.23 Total: -51.62 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -1.07 Total: -24.79 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.67 -9.12 -43.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198444457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.334 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds