Wall clock time and date at job start Tue Mar 31 2020 19:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38260 * 119.94216 * 2 1 4 4 C 1.38153 * 120.05292 * 180.02562 * 3 2 1 5 5 C 1.38730 * 119.94373 * 0.02562 * 4 3 2 6 6 O 1.35897 * 120.05625 * 180.02562 * 5 4 3 7 7 C 1.42904 * 116.99558 * 355.31811 * 6 5 4 8 8 H 1.09002 * 109.47554 * 322.79714 * 7 6 5 9 9 C 1.52998 * 109.47329 * 82.80013 * 7 6 5 10 10 C 1.50710 * 109.46748 * 202.79685 * 7 6 5 11 11 O 1.21278 * 120.00196 * 0.02562 * 10 7 6 12 12 N 1.34781 * 119.99617 * 179.97438 * 10 7 6 13 13 C 1.46500 * 119.99720 * 180.02562 * 12 10 7 14 14 H 1.08998 * 110.64188 * 31.85440 * 13 12 10 15 15 C 1.54337 * 110.99927 * 268.78417 * 13 12 10 16 16 N 1.47026 * 107.26289 * 219.60109 * 15 13 12 17 17 C 1.36938 * 125.64557 * 178.84526 * 16 15 13 18 18 H 1.08003 * 120.00484 * 346.98800 * 17 16 15 19 19 C 1.38819 * 119.99748 * 166.98436 * 17 16 15 20 20 N 1.31624 * 119.99977 * 345.88709 * 19 17 16 21 21 Si 1.86801 * 119.99792 * 165.88300 * 19 17 16 22 22 H 1.48501 * 109.46952 * 84.99340 * 21 19 17 23 23 H 1.48495 * 109.47114 * 324.99236 * 21 19 17 24 24 H 1.48498 * 109.46829 * 204.98750 * 21 19 17 25 25 C 1.47424 * 108.70392 * 358.58649 * 16 15 13 26 26 C 1.54907 * 104.83197 * 24.35346 * 25 16 15 27 27 H 1.08997 * 111.00432 * 81.07006 * 26 25 16 28 28 O 1.42905 * 111.00498 * 204.87876 * 26 25 16 29 29 C 1.38727 * 119.88736 * 0.26781 * 5 4 3 30 30 C 1.38146 * 119.94606 * 359.42896 * 29 5 4 31 31 H 1.08999 * 109.47358 * 89.99869 * 1 2 3 32 32 H 1.08997 * 109.46928 * 209.99886 * 1 2 3 33 33 H 1.08999 * 109.47055 * 329.99523 * 1 2 3 34 34 H 1.07997 * 119.97450 * 359.97438 * 3 2 1 35 35 H 1.08003 * 120.02582 * 179.97438 * 4 3 2 36 36 H 1.08993 * 109.47202 * 299.99680 * 9 7 6 37 37 H 1.09009 * 109.47223 * 59.99712 * 9 7 6 38 38 H 1.09002 * 109.47422 * 179.97438 * 9 7 6 39 39 H 0.96994 * 120.00180 * 0.02562 * 12 10 7 40 40 H 1.09004 * 109.99534 * 100.12563 * 15 13 12 41 41 H 1.09004 * 109.77960 * 338.95119 * 15 13 12 42 42 H 0.96995 * 119.99792 * 179.97438 * 20 19 17 43 43 H 1.08998 * 110.37066 * 143.19377 * 25 16 15 44 44 H 1.09000 * 110.36142 * 265.51821 * 25 16 15 45 45 H 0.96700 * 114.00197 * 298.54873 * 28 26 25 46 46 H 1.08000 * 120.02759 * 179.72535 * 29 5 4 47 47 H 1.08000 * 119.97292 * 180.27358 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2007 -0.0005 5 6 4.2734 0.0000 -0.0016 6 8 5.6324 -0.0001 -0.0016 7 6 6.2811 1.2691 -0.1044 8 1 5.7167 1.9120 -0.7799 9 6 6.3516 1.9194 1.2787 10 6 7.6763 1.0780 -0.6413 11 8 8.0755 -0.0352 -0.9099 12 7 8.4800 2.1445 -0.8239 13 6 9.8360 1.9588 -1.3463 14 1 9.8720 1.1094 -2.0284 15 6 10.8505 1.7738 -0.1981 16 7 12.0683 2.5093 -0.5692 17 6 13.2008 2.6143 0.1935 18 1 13.1819 2.3184 1.2321 19 6 14.3733 3.1010 -0.3682 20 7 14.4851 3.1992 -1.6760 21 14 15.7922 3.6165 0.7319 22 1 16.6149 2.4270 1.0686 23 1 15.2576 4.2180 1.9799 24 1 16.6320 4.6142 0.0216 25 6 11.8706 3.1099 -1.9009 26 6 10.3349 3.2489 -2.0492 27 1 9.9718 4.1390 -1.5356 28 8 9.9525 3.2636 -3.4260 29 6 3.5786 -1.2007 -0.0078 30 6 2.1971 -1.1981 -0.0009 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6557 2.1326 -0.0004 35 1 4.1173 2.1369 -0.0010 36 1 5.3426 2.0576 1.6670 37 1 6.9160 1.2764 1.9542 38 1 6.8468 2.8873 1.2004 39 1 8.1605 3.0348 -0.6094 40 1 11.0807 0.7160 -0.0709 41 1 10.4395 2.1797 0.7263 42 1 15.3042 3.5396 -2.0685 43 1 12.3466 4.0892 -1.9500 44 1 12.2687 2.4543 -2.6755 45 1 10.3232 4.0014 -3.9294 46 1 4.1172 -2.1368 -0.0131 47 1 1.6558 -2.1326 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198444457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:03 Heat of formation + Delta-G solvation = -93.157819 kcal Electronic energy + Delta-G solvation = -28457.207473 eV Core-core repulsion = 24412.140023 eV Total energy + Delta-G solvation = -4045.067449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.77854 -40.76896 -39.51280 -38.47007 -36.70339 -35.72185 -34.03047 -33.25950 -32.40073 -31.71630 -30.12229 -28.83270 -27.38885 -26.52327 -25.31114 -23.92665 -22.66393 -22.37811 -21.80373 -21.28638 -19.40567 -19.13343 -18.47124 -18.27326 -17.33158 -16.89155 -16.79246 -16.40857 -16.23075 -15.82777 -15.64394 -15.37859 -15.24039 -14.95170 -14.68277 -14.51182 -14.38008 -14.10634 -14.06678 -13.92096 -13.46050 -13.28218 -13.19003 -13.08192 -12.90131 -12.82711 -12.72605 -12.64234 -12.38011 -12.13897 -11.92025 -11.85733 -11.70225 -11.57846 -11.14855 -10.84343 -10.72921 -10.28503 -9.94489 -9.00392 -8.95453 -7.95111 -5.31929 0.39381 0.44882 1.38115 1.46746 1.47480 1.49618 1.57835 2.43419 2.52500 2.79729 3.02290 3.24435 3.40308 3.57432 3.67127 3.80529 3.86081 3.90742 3.97971 4.02764 4.11376 4.15351 4.35045 4.40353 4.47605 4.51253 4.54236 4.64568 4.73325 4.81738 4.84954 4.88581 4.91957 5.11482 5.12614 5.19633 5.22871 5.35140 5.38988 5.40699 5.44199 5.57592 5.70677 5.86818 6.10051 6.31611 6.47904 6.83491 6.99164 7.08635 7.64809 8.30615 9.16785 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028197 B = 0.002095 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.790984 B =13363.061515 C =13704.523321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.132 4.132 3 C -0.083 4.083 4 C -0.209 4.209 5 C 0.101 3.899 6 O -0.318 6.318 7 C 0.075 3.925 8 H 0.128 0.872 9 C -0.172 4.172 10 C 0.515 3.485 11 O -0.571 6.571 12 N -0.690 5.690 13 C 0.156 3.844 14 H 0.073 0.927 15 C 0.130 3.870 16 N -0.614 5.614 17 C -0.253 4.253 18 H 0.080 0.920 19 C -0.057 4.057 20 N -0.944 5.944 21 Si 0.980 3.020 22 H -0.287 1.287 23 H -0.267 1.267 24 H -0.290 1.290 25 C 0.155 3.845 26 C 0.095 3.905 27 H 0.099 0.901 28 O -0.568 6.568 29 C -0.169 4.169 30 C -0.085 4.085 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.107 0.893 39 H 0.421 0.579 40 H 0.007 0.993 41 H 0.050 0.950 42 H 0.252 0.748 43 H 0.047 0.953 44 H 0.004 0.996 45 H 0.398 0.602 46 H 0.122 0.878 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.997 2.744 3.546 29.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.132 4.132 3 C -0.101 4.101 4 C -0.227 4.227 5 C 0.056 3.944 6 O -0.231 6.231 7 C 0.016 3.984 8 H 0.146 0.854 9 C -0.230 4.230 10 C 0.301 3.699 11 O -0.449 6.449 12 N -0.344 5.344 13 C 0.050 3.950 14 H 0.091 0.909 15 C 0.003 3.997 16 N -0.342 5.342 17 C -0.381 4.381 18 H 0.098 0.902 19 C -0.251 4.251 20 N -0.591 5.591 21 Si 0.807 3.193 22 H -0.214 1.214 23 H -0.192 1.192 24 H -0.215 1.215 25 C 0.029 3.971 26 C 0.034 3.966 27 H 0.116 0.884 28 O -0.376 6.376 29 C -0.187 4.187 30 C -0.103 4.103 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.113 0.887 37 H 0.077 0.923 38 H 0.125 0.875 39 H 0.259 0.741 40 H 0.025 0.975 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.022 0.978 45 H 0.249 0.751 46 H 0.140 0.860 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -28.722 1.320 3.515 28.967 hybrid contribution 1.823 0.612 0.086 1.925 sum -26.899 1.932 3.601 27.208 Atomic orbital electron populations 1.20765 0.89104 1.03644 1.02897 1.20237 0.97752 0.92819 1.02399 1.21198 0.92930 0.98902 0.97082 1.21547 0.96060 0.96962 1.08148 1.19333 0.81511 0.95566 0.97976 1.86176 1.17442 1.31243 1.88266 1.22267 0.89849 0.85397 1.00900 0.85423 1.22397 1.05323 1.02023 0.93217 1.20786 0.87448 0.84416 0.77250 1.90737 1.76444 1.26242 1.51516 1.45528 1.12858 1.10238 1.65796 1.21527 0.81098 0.98296 0.94109 0.90896 1.21712 0.87105 0.94518 0.96363 1.44556 1.12566 1.58571 1.18521 1.19352 0.87681 1.38458 0.92633 0.90245 1.25717 0.99827 1.02460 0.97112 1.70146 1.27565 1.51218 1.10127 0.85105 0.78553 0.77540 0.78112 1.21410 1.19190 1.21549 1.21802 0.91515 0.97109 0.86653 1.23216 0.94045 0.96493 0.82822 0.88361 1.86404 1.74839 1.55330 1.21004 1.20649 0.94826 0.96339 1.06934 1.21111 0.92128 0.99232 0.97832 0.90712 0.90925 0.90505 0.83133 0.83180 0.88734 0.92294 0.87484 0.74090 0.97456 0.93175 0.93916 0.93418 0.97781 0.75127 0.85981 0.83585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 71.24 0.71 -0.17 16 2 C -0.13 -1.86 5.88 -19.85 -0.12 -1.98 16 3 C -0.08 -1.15 9.69 22.25 0.22 -0.93 16 4 C -0.21 -3.48 8.16 22.37 0.18 -3.30 16 5 C 0.10 2.33 6.58 22.50 0.15 2.47 16 6 O -0.32 -8.92 9.34 -73.36 -0.69 -9.60 16 7 C 0.08 1.64 2.66 29.85 0.08 1.72 16 8 H 0.13 1.97 6.41 -2.39 -0.02 1.96 16 9 C -0.17 -2.68 9.02 71.98 0.65 -2.04 16 10 C 0.51 15.86 7.23 87.66 0.63 16.49 16 11 O -0.57 -24.30 16.14 16.01 0.26 -24.04 16 12 N -0.69 -18.85 5.01 -436.89 -2.19 -21.04 16 13 C 0.16 5.74 3.04 46.18 0.14 5.88 16 14 H 0.07 3.19 7.55 -2.39 -0.02 3.17 16 15 C 0.13 5.62 7.01 86.73 0.61 6.23 16 16 N -0.61 -31.38 3.39 -691.94 -2.35 -33.72 16 17 C -0.25 -14.05 10.20 84.04 0.86 -13.19 16 18 H 0.08 4.27 7.87 -2.91 -0.02 4.25 16 19 C -0.06 -3.17 5.33 84.86 0.45 -2.72 16 20 N -0.94 -55.50 11.00 21.65 0.24 -55.26 16 21 Si 0.98 44.65 29.58 68.60 2.03 46.68 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 24 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 25 C 0.16 7.29 5.11 86.85 0.44 7.73 16 26 C 0.09 3.25 4.06 31.98 0.13 3.38 16 27 H 0.10 2.75 8.01 -2.39 -0.02 2.73 16 28 O -0.57 -17.73 13.47 -148.98 -2.01 -19.74 16 29 C -0.17 -3.71 9.99 22.36 0.22 -3.49 16 30 C -0.09 -1.41 9.69 22.25 0.22 -1.20 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.50 8.08 -2.39 -0.02 0.48 16 33 H 0.08 0.46 8.08 -2.39 -0.02 0.44 16 34 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.15 1.74 5.37 -2.91 -0.02 1.73 16 36 H 0.09 1.14 6.72 -2.39 -0.02 1.13 16 37 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.11 1.09 7.56 -2.39 -0.02 1.07 16 39 H 0.42 7.72 7.98 -92.71 -0.74 6.98 16 40 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.05 1.99 8.03 -2.38 -0.02 1.97 16 42 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 43 H 0.05 2.38 7.28 -2.39 -0.02 2.37 16 44 H 0.00 0.23 7.98 -2.39 -0.02 0.21 16 45 H 0.40 9.02 9.11 -74.06 -0.67 8.34 16 46 H 0.12 2.76 8.06 -2.91 -0.02 2.73 16 47 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -79.84 385.89 0.46 -79.38 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.41 Total: 22.45 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 5.58 Total: 14.89 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -4.30 Total: -110.02 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -2.43 Total: -53.39 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -79.84 0.46 -79.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198444457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.774 kcal (2) G-P(sol) polarization free energy of solvation -79.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds