Wall clock time and date at job start Tue Mar 31 2020 17:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38290 * 119.94903 * 2 1 4 4 C 1.38122 * 120.05789 * 180.02562 * 3 2 1 5 5 C 1.38750 * 119.94351 * 359.97438 * 4 3 2 6 6 O 1.35900 * 120.05434 * 179.97438 * 5 4 3 7 7 C 1.42902 * 116.99880 * 0.02562 * 6 5 4 8 8 C 1.50703 * 109.46897 * 179.97438 * 7 6 5 9 9 O 1.21285 * 120.00008 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99890 * 179.97438 * 8 7 6 11 11 C 1.46495 * 119.99803 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.78470 * 36.79251 * 11 10 8 13 13 C 1.54325 * 110.72250 * 273.54657 * 11 10 8 14 14 N 1.47018 * 107.40412 * 219.52320 * 13 11 10 15 15 C 1.36936 * 125.64899 * 178.89496 * 14 13 11 16 16 H 1.07997 * 119.99931 * 0.02562 * 15 14 13 17 17 C 1.38819 * 120.00094 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99956 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99883 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47090 * 90.00295 * 19 17 15 21 21 H 1.48500 * 109.46944 * 210.00181 * 19 17 15 22 22 H 1.48498 * 109.47226 * 330.00384 * 19 17 15 23 23 C 1.47426 * 108.70517 * 358.86539 * 14 13 11 24 24 C 1.54914 * 104.82992 * 24.12623 * 23 14 13 25 25 H 1.09001 * 111.00161 * 204.91727 * 24 23 14 26 26 O 1.42894 * 111.00242 * 81.06951 * 24 23 14 27 27 C 1.38711 * 119.89053 * 0.27422 * 5 4 3 28 28 C 1.38170 * 119.94351 * 359.48976 * 27 5 4 29 29 C 1.50695 * 119.97388 * 180.23076 * 28 27 5 30 30 H 1.09007 * 109.47156 * 90.00474 * 1 2 3 31 31 H 1.09005 * 109.47770 * 210.00402 * 1 2 3 32 32 H 1.09005 * 109.47376 * 330.00255 * 1 2 3 33 33 H 1.08000 * 119.96909 * 359.97438 * 3 2 1 34 34 H 1.08000 * 120.02525 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.47246 * 59.99939 * 7 6 5 36 36 H 1.09000 * 109.47099 * 299.99951 * 7 6 5 37 37 H 0.96997 * 119.99763 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.88192 * 100.02760 * 13 11 10 39 39 H 1.09000 * 109.88128 * 339.01612 * 13 11 10 40 40 H 0.96998 * 120.00119 * 179.97438 * 18 17 15 41 41 H 1.08999 * 110.36956 * 142.96999 * 23 14 13 42 42 H 1.09003 * 110.36599 * 265.28903 * 23 14 13 43 43 H 0.96703 * 114.00602 * 61.45224 * 26 24 23 44 44 H 1.08004 * 120.02978 * 179.72698 * 27 5 4 45 45 H 1.08999 * 109.47270 * 270.25544 * 29 28 27 46 46 H 1.09006 * 109.46899 * 30.26034 * 29 28 27 47 47 H 1.09002 * 109.47252 * 150.25572 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2009 -0.0005 5 6 4.2734 -0.0001 -0.0005 6 8 5.6324 -0.0002 -0.0016 7 6 6.2811 1.2731 -0.0021 8 6 7.7752 1.0756 -0.0026 9 8 8.2387 -0.0452 -0.0030 10 7 8.5962 2.1444 -0.0037 11 6 10.0485 1.9523 -0.0047 12 1 10.3245 1.0924 -0.6150 13 6 10.5793 1.7928 1.4356 14 7 11.8536 2.5214 1.5178 15 6 12.6335 2.6412 2.6370 16 1 12.3258 2.1765 3.5620 17 6 13.8204 3.3593 2.5822 18 7 14.1957 3.9252 1.4548 19 14 14.8846 3.5222 4.1087 20 1 15.8556 2.3996 4.1573 21 1 15.6203 4.8114 4.0639 22 1 14.0241 3.4850 5.3184 23 6 12.1531 3.1009 0.1958 24 6 10.7755 3.2333 -0.5004 25 1 10.8837 3.2270 -1.5850 26 8 10.0914 4.4091 -0.0628 27 6 3.5786 -1.2007 -0.0058 28 6 2.1969 -1.1980 -0.0003 29 6 1.4415 -2.5019 -0.0007 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3635 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6560 2.1328 -0.0004 34 1 4.1172 2.1370 -0.0010 35 1 5.9890 1.8301 0.8881 36 1 5.9876 1.8301 -0.8918 37 1 8.2255 3.0407 -0.0037 38 1 10.7406 0.7376 1.6564 39 1 9.8649 2.2144 2.1427 40 1 15.0248 4.4272 1.4166 41 1 12.6175 4.0807 0.3074 42 1 12.8027 2.4348 -0.3721 43 1 10.5567 5.2327 -0.2637 44 1 4.1172 -2.1368 -0.0102 45 1 1.2593 -2.8159 -1.0284 46 1 2.0295 -3.2626 0.5129 47 1 0.4893 -2.3704 0.5133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220966507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:34 Heat of formation + Delta-G solvation = -66.584151 kcal Electronic energy + Delta-G solvation = -28054.962000 eV Core-core repulsion = 24011.046872 eV Total energy + Delta-G solvation = -4043.915129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.62391 -39.63409 -38.29011 -37.50458 -34.75294 -34.03971 -32.95356 -32.31840 -31.76098 -29.54273 -28.36640 -27.49993 -26.61340 -26.13054 -24.41557 -22.52678 -21.40252 -20.70747 -20.26523 -19.79756 -18.21067 -17.53355 -17.00979 -16.67619 -16.38721 -16.01653 -15.62234 -15.25635 -14.84373 -14.72043 -14.45198 -14.32508 -14.08603 -13.95326 -13.57828 -13.23473 -13.10702 -13.00321 -12.90043 -12.58559 -12.41847 -12.26525 -12.21825 -11.80225 -11.52102 -11.36918 -11.11294 -11.07704 -10.98564 -10.87680 -10.65301 -10.36092 -10.07597 -9.86829 -9.71860 -9.30152 -9.04288 -8.79298 -8.71216 -8.25365 -6.88174 -5.72345 -3.12040 1.06200 1.18221 2.50819 2.65945 3.38296 3.43452 3.45097 3.46029 3.64118 4.40992 4.48220 4.50189 4.55720 4.66914 4.74690 4.84673 4.87066 4.90378 4.94924 5.07151 5.19934 5.29948 5.33883 5.34562 5.43238 5.46184 5.46976 5.53579 5.67544 5.72658 5.83398 5.88017 5.99953 6.07610 6.13356 6.24174 6.38714 6.45750 6.53443 6.68514 6.88829 7.17366 7.22446 7.52639 7.66096 7.71565 8.07089 8.27721 8.34406 9.15482 9.76263 10.39294 11.33003 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.001940 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.008708 B =14431.498661 C =14705.698791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.130 4.130 3 C -0.076 4.076 4 C -0.213 4.213 5 C 0.131 3.869 6 O -0.288 6.288 7 C 0.043 3.957 8 C 0.511 3.489 9 O -0.521 6.521 10 N -0.703 5.703 11 C 0.145 3.855 12 H 0.101 0.899 13 C 0.130 3.870 14 N -0.597 5.597 15 C -0.216 4.216 16 H 0.078 0.922 17 C -0.013 4.013 18 N -0.928 5.928 19 Si 0.917 3.083 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.126 3.874 24 C 0.068 3.932 25 H 0.060 0.940 26 O -0.563 6.563 27 C -0.147 4.147 28 C -0.048 4.048 29 C -0.118 4.118 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.409 0.591 38 H 0.029 0.971 39 H 0.030 0.970 40 H 0.252 0.748 41 H 0.116 0.884 42 H 0.023 0.977 43 H 0.381 0.619 44 H 0.132 0.868 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.625 -3.194 -7.130 26.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.130 4.130 3 C -0.094 4.094 4 C -0.232 4.232 5 C 0.086 3.914 6 O -0.200 6.200 7 C -0.036 4.036 8 C 0.295 3.705 9 O -0.396 6.396 10 N -0.357 5.357 11 C 0.040 3.960 12 H 0.119 0.881 13 C 0.003 3.997 14 N -0.323 5.323 15 C -0.344 4.344 16 H 0.096 0.904 17 C -0.208 4.208 18 N -0.577 5.577 19 Si 0.748 3.252 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.000 4.000 24 C 0.008 3.992 25 H 0.078 0.922 26 O -0.370 6.370 27 C -0.166 4.166 28 C -0.048 4.048 29 C -0.174 4.174 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.244 0.756 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.134 0.866 42 H 0.041 0.959 43 H 0.229 0.771 44 H 0.150 0.850 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -25.381 -4.533 -6.839 26.674 hybrid contribution 0.936 1.224 0.571 1.643 sum -24.445 -3.309 -6.268 25.452 Atomic orbital electron populations 1.20777 0.91228 1.02653 1.02089 1.19659 0.96087 0.92512 1.04761 1.20789 0.93215 0.97592 0.97793 1.21255 0.95471 0.97013 1.09412 1.19038 0.82082 0.94278 0.96038 1.86169 1.16048 1.29454 1.88350 1.22487 0.91606 0.85722 1.03787 1.19976 0.87522 0.85532 0.77458 1.90756 1.77129 1.23574 1.48119 1.45650 1.06602 1.08910 1.74503 1.22208 0.77698 0.97376 0.98720 0.88114 1.21597 0.89218 0.95711 0.93125 1.44292 1.20470 1.59756 1.07787 1.19106 0.99992 1.27014 0.88312 0.90373 1.24765 0.97991 1.00484 0.97564 1.69705 1.24027 1.39762 1.24200 0.86019 0.80220 0.77132 0.81829 1.21605 1.21649 1.20688 1.22636 0.89958 1.02488 0.84880 1.23633 0.95083 0.84280 0.96253 0.92217 1.86196 1.50001 1.16060 1.84708 1.20295 0.92997 0.96545 1.06725 1.19531 0.92443 0.95171 0.97699 1.20881 1.00083 0.93863 1.02606 0.91489 0.91321 0.91840 0.85781 0.85338 0.88921 0.89064 0.75565 0.95291 0.95235 0.93697 0.86625 0.95871 0.77067 0.85004 0.90851 0.91287 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 9.60 36.00 0.35 -0.31 16 2 C -0.13 -1.13 5.88 -104.60 -0.62 -1.75 16 3 C -0.08 -0.67 9.69 -39.60 -0.38 -1.05 16 4 C -0.21 -2.11 9.04 -39.43 -0.36 -2.47 16 5 C 0.13 1.59 6.69 -39.22 -0.26 1.32 16 6 O -0.29 -4.06 9.67 -39.34 -0.38 -4.44 16 7 C 0.04 0.50 5.22 36.01 0.19 0.69 16 8 C 0.51 7.98 7.90 -10.98 -0.09 7.90 16 9 O -0.52 -10.47 16.23 -14.36 -0.23 -10.70 16 10 N -0.70 -10.59 5.09 -51.90 -0.26 -10.86 16 11 C 0.14 2.65 3.13 -65.96 -0.21 2.44 16 12 H 0.10 1.90 7.70 -51.93 -0.40 1.50 16 13 C 0.13 2.90 6.98 -3.07 -0.02 2.88 16 14 N -0.60 -15.27 3.39 -170.07 -0.58 -15.85 16 15 C -0.22 -6.05 10.27 -15.06 -0.15 -6.20 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 18 N -0.93 -26.26 10.09 55.49 0.56 -25.70 16 19 Si 0.92 22.05 29.55 -169.99 -5.02 17.03 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 C 0.13 2.90 5.62 -2.53 -0.01 2.88 16 24 C 0.07 1.20 4.30 -24.44 -0.11 1.10 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 O -0.56 -9.13 12.23 -35.23 -0.43 -9.56 16 27 C -0.15 -1.65 9.64 -39.43 -0.38 -2.03 16 28 C -0.05 -0.45 5.88 -104.64 -0.62 -1.07 16 29 C -0.12 -0.77 9.60 36.00 0.35 -0.43 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.35 5.94 -51.93 -0.31 0.04 16 32 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 35 H 0.09 0.88 7.66 -51.93 -0.40 0.48 16 36 H 0.09 0.80 7.66 -51.93 -0.40 0.40 16 37 H 0.41 5.27 7.57 -40.82 -0.31 4.96 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.03 0.67 8.03 -51.93 -0.42 0.26 16 40 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.12 2.92 5.87 -51.93 -0.31 2.62 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.38 5.07 9.11 45.56 0.42 5.49 16 44 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 47 H 0.07 0.38 5.94 -51.93 -0.31 0.07 16 LS Contribution 383.44 15.07 5.78 5.78 Total: -1.00 -34.18 383.44 -9.09 -43.28 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.10 Total: 7.59 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -2.42 Total: 3.44 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.28 Total: -52.41 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -1.04 Total: -24.71 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.18 -9.09 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220966507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.306 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds