Wall clock time and date at job start Tue Mar 31 2020 18:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38162 * 120.02881 * 2 1 4 4 C 1.38250 * 120.05697 * 179.97438 * 3 2 1 5 5 C 1.38288 * 120.10951 * 0.03288 * 4 3 2 6 6 C 1.38125 * 120.05524 * 359.66834 * 5 4 3 7 7 C 1.38715 * 120.02728 * 179.97438 * 2 1 3 8 8 O 1.35895 * 120.05471 * 0.02868 * 7 2 1 9 9 C 1.42902 * 116.99680 * 179.97438 * 8 7 2 10 10 C 1.53002 * 109.47233 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47614 * 180.02562 * 10 9 8 12 12 O 1.21278 * 119.99857 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99994 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99815 * 179.97438 * 13 11 10 15 15 H 1.09007 * 110.78224 * 31.75692 * 14 13 11 16 16 C 1.54327 * 110.72029 * 268.52263 * 14 13 11 17 17 N 1.47024 * 107.26790 * 219.44504 * 16 14 13 18 18 C 1.36939 * 125.64645 * 178.97893 * 17 16 14 19 19 H 1.07999 * 119.99828 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00209 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99881 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00502 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46949 * 59.99834 * 22 20 18 24 24 H 1.48489 * 109.47273 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46810 * 300.00212 * 22 20 18 26 26 C 1.47524 * 108.71771 * 358.93887 * 17 16 14 27 27 C 1.54910 * 104.78261 * 24.11745 * 26 17 16 28 28 H 1.08990 * 111.00561 * 204.89950 * 27 26 17 29 29 O 1.42903 * 110.99677 * 81.09107 * 27 26 17 30 30 H 1.09006 * 109.46929 * 270.01645 * 1 2 3 31 31 H 1.08991 * 109.47463 * 30.01772 * 1 2 3 32 32 H 1.08998 * 109.47515 * 150.02084 * 1 2 3 33 33 H 1.08002 * 119.97438 * 359.96011 * 3 2 1 34 34 H 1.07996 * 119.94321 * 179.97438 * 4 3 2 35 35 H 1.08002 * 119.96748 * 179.97438 * 5 4 3 36 36 H 1.08006 * 120.02616 * 180.32395 * 6 5 4 37 37 H 1.08997 * 109.47764 * 59.99961 * 9 8 7 38 38 H 1.09002 * 109.47107 * 299.99182 * 9 8 7 39 39 H 1.08998 * 109.47174 * 59.99345 * 10 9 8 40 40 H 1.09009 * 109.47012 * 300.00136 * 10 9 8 41 41 H 0.96998 * 120.00211 * 359.97438 * 13 11 10 42 42 H 1.09005 * 109.88171 * 338.85690 * 16 14 13 43 43 H 1.09002 * 109.88419 * 99.86998 * 16 14 13 44 44 H 0.97003 * 120.00144 * 180.02562 * 21 20 18 45 45 H 1.09002 * 110.36567 * 265.31052 * 26 17 16 46 46 H 1.09002 * 110.41117 * 142.95688 * 26 17 16 47 47 H 0.96700 * 114.00311 * 64.58311 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1968 0.0005 5 6 4.2752 0.0009 0.0004 6 6 3.5886 -1.1976 0.0066 7 6 2.2011 -1.2010 0.0005 8 8 1.5233 -2.3788 0.0005 9 6 2.3034 -3.5761 0.0005 10 6 1.3732 -4.7909 0.0010 11 6 2.1958 -6.0536 0.0017 12 8 3.4068 -5.9884 0.0012 13 7 1.5856 -7.2554 0.0017 14 6 2.3853 -8.4829 0.0018 15 1 3.3225 -8.3339 0.5382 16 6 2.6521 -8.9607 -1.4411 17 7 2.5423 -10.4269 -1.4427 18 6 2.6906 -11.2371 -2.5366 19 1 2.9074 -10.8057 -3.5027 20 6 2.5624 -12.6129 -2.4039 21 7 2.2988 -13.1386 -1.2264 22 14 2.7641 -13.7182 -3.8962 23 1 4.1236 -13.5379 -4.4656 24 1 2.5803 -15.1350 -3.4913 25 1 1.7479 -13.3602 -4.9182 26 6 2.2467 -10.8809 -0.0705 27 6 1.5830 -9.6607 0.6152 28 1 1.7137 -9.7013 1.6965 29 8 0.1986 -9.5710 0.2724 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8897 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6584 2.1315 -0.0007 34 1 4.1195 2.1329 0.0001 35 1 5.3552 0.0041 0.0004 36 1 4.1314 -2.1314 0.0118 37 1 2.9322 -3.6002 0.8904 38 1 2.9322 -3.6001 -0.8896 39 1 0.7440 -4.7672 -0.8886 40 1 0.7446 -4.7668 0.8913 41 1 0.6170 -7.3076 0.0017 42 1 1.9111 -8.5328 -2.1164 43 1 3.6531 -8.6613 -1.7517 44 1 2.2096 -14.1001 -1.1335 45 1 3.1676 -11.1519 0.4460 46 1 1.5587 -11.7261 -0.0897 47 1 -0.3347 -10.3114 0.5926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220969606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:04 Heat of formation + Delta-G solvation = -72.441840 kcal Electronic energy + Delta-G solvation = -28006.268813 eV Core-core repulsion = 23962.099676 eV Total energy + Delta-G solvation = -4044.169137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.52831 -39.75159 -38.06254 -37.55139 -34.75669 -34.03204 -33.18637 -32.24602 -31.50733 -30.03201 -28.56168 -27.17521 -26.93364 -25.10480 -24.14058 -22.04533 -21.74213 -20.71618 -20.24457 -19.81982 -18.45142 -17.39440 -16.82283 -16.60270 -16.52690 -16.18360 -15.77218 -15.37070 -14.97429 -14.84295 -14.60189 -14.25428 -13.82465 -13.76398 -13.72678 -13.35852 -13.06596 -12.91454 -12.78797 -12.53287 -12.48463 -12.02665 -11.96134 -11.76413 -11.58777 -11.37096 -11.12715 -10.99707 -10.96070 -10.87336 -10.66360 -10.41035 -10.09414 -9.86856 -9.80469 -9.27901 -9.08255 -8.77517 -8.70800 -8.34920 -6.88562 -5.72300 -3.12319 1.06641 1.19991 2.66897 2.70500 3.38537 3.42478 3.43607 3.50656 3.56454 4.44802 4.46904 4.54178 4.57023 4.65213 4.75153 4.83633 4.96857 5.02087 5.03690 5.24012 5.31026 5.33544 5.35576 5.41514 5.45383 5.46715 5.52120 5.56256 5.62501 5.68586 5.88434 5.95523 6.01430 6.11177 6.20251 6.24057 6.28394 6.47805 6.55213 6.65260 6.88784 7.17707 7.21990 7.52368 7.66721 7.73290 8.07869 8.27884 8.35025 9.14986 9.76008 10.39085 11.32839 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024755 B = 0.001906 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.799991 B =14689.011505 C =15083.464029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.158 4.158 5 C -0.086 4.086 6 C -0.204 4.204 7 C 0.133 3.867 8 O -0.315 6.315 9 C 0.076 3.924 10 C -0.139 4.139 11 C 0.515 3.485 12 O -0.548 6.548 13 N -0.704 5.704 14 C 0.141 3.859 15 H 0.102 0.898 16 C 0.131 3.869 17 N -0.597 5.597 18 C -0.218 4.218 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.927 5.927 22 Si 0.918 3.082 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.126 3.874 27 C 0.067 3.933 28 H 0.059 0.941 29 O -0.562 6.562 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.410 0.590 42 H 0.029 0.971 43 H 0.027 0.973 44 H 0.253 0.747 45 H 0.023 0.977 46 H 0.116 0.884 47 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 24.214 6.733 25.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.121 4.121 3 C -0.105 4.105 4 C -0.176 4.176 5 C -0.104 4.104 6 C -0.223 4.223 7 C 0.088 3.912 8 O -0.228 6.228 9 C 0.000 4.000 10 C -0.179 4.179 11 C 0.301 3.699 12 O -0.426 6.426 13 N -0.355 5.355 14 C 0.036 3.964 15 H 0.120 0.880 16 C 0.004 3.996 17 N -0.323 5.323 18 C -0.346 4.346 19 H 0.095 0.905 20 C -0.207 4.207 21 N -0.577 5.577 22 Si 0.748 3.252 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.001 3.999 27 C 0.006 3.994 28 H 0.076 0.924 29 O -0.368 6.368 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.150 0.850 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.246 0.754 42 H 0.047 0.953 43 H 0.045 0.955 44 H 0.064 0.936 45 H 0.041 0.959 46 H 0.133 0.867 47 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -3.259 24.517 6.386 25.543 hybrid contribution -0.103 -1.277 -0.507 1.378 sum -3.362 23.239 5.880 24.206 Atomic orbital electron populations 1.20606 0.90500 1.02791 1.02265 1.19290 0.96584 0.90354 1.05887 1.20874 0.94146 0.96704 0.98734 1.21040 0.94236 0.98060 1.04251 1.20961 0.99895 0.91855 0.97699 1.21383 0.93123 0.99858 1.07889 1.18797 0.90385 0.85482 0.96574 1.85955 1.36082 1.12335 1.88466 1.22446 0.93201 0.81214 1.03115 1.21450 0.99276 0.91129 1.06076 1.20232 0.88425 0.84930 0.76338 1.90718 1.14232 1.87400 1.50278 1.45794 1.11152 1.04810 1.73706 1.22172 0.94243 0.81723 0.98244 0.87987 1.21590 0.98202 0.86522 0.93289 1.44303 1.83432 0.99278 1.05279 1.19052 1.40542 0.87699 0.87285 0.90452 1.24764 1.02271 0.96484 0.97230 1.69705 1.56012 1.10704 1.21233 0.86100 0.77974 0.79587 0.81545 1.21182 1.21553 1.21150 1.22637 0.98863 0.94349 0.84063 1.23580 0.82043 0.97162 0.96566 0.92368 1.86213 1.18944 1.49718 1.81962 0.91441 0.91802 0.91031 0.85546 0.86026 0.85826 0.85029 0.91031 0.90942 0.87674 0.87805 0.75434 0.95266 0.95461 0.93646 0.95932 0.86682 0.77185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 9.79 36.00 0.35 -0.48 16 2 C -0.12 -1.19 5.89 -104.48 -0.62 -1.80 16 3 C -0.09 -0.73 9.70 -39.60 -0.38 -1.12 16 4 C -0.16 -1.31 10.04 -39.56 -0.40 -1.71 16 5 C -0.09 -0.79 10.04 -39.60 -0.40 -1.18 16 6 C -0.20 -2.15 9.04 -39.43 -0.36 -2.51 16 7 C 0.13 1.48 6.66 -39.22 -0.26 1.22 16 8 O -0.31 -3.54 9.18 -19.41 -0.18 -3.71 16 9 C 0.08 0.83 4.03 37.16 0.15 0.98 16 10 C -0.14 -1.43 6.07 -27.88 -0.17 -1.60 16 11 C 0.52 7.34 7.83 -10.98 -0.09 7.25 16 12 O -0.55 -9.74 15.63 5.56 0.09 -9.65 16 13 N -0.70 -10.36 5.07 -52.03 -0.26 -10.63 16 14 C 0.14 2.55 3.20 -66.10 -0.21 2.34 16 15 H 0.10 1.90 7.55 -51.92 -0.39 1.50 16 16 C 0.13 2.87 6.99 -3.06 -0.02 2.85 16 17 N -0.60 -15.21 3.40 -169.99 -0.58 -15.78 16 18 C -0.22 -6.07 10.27 -15.06 -0.15 -6.22 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 20 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 21 N -0.93 -26.25 10.09 55.49 0.56 -25.69 16 22 Si 0.92 21.97 29.55 -169.99 -5.02 16.95 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.13 2.91 5.63 -2.47 -0.01 2.90 16 27 C 0.07 1.19 4.28 -24.59 -0.11 1.08 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 O -0.56 -9.22 12.24 -35.23 -0.43 -9.65 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.07 0.61 7.53 -51.93 -0.39 0.22 16 33 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.34 6.30 -52.48 -0.33 1.01 16 37 H 0.07 0.80 7.61 -51.93 -0.39 0.40 16 38 H 0.07 0.84 7.63 -51.93 -0.40 0.44 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.41 5.39 7.59 -40.82 -0.31 5.08 16 42 H 0.03 0.65 8.03 -51.93 -0.42 0.24 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.12 2.92 5.88 -51.93 -0.31 2.62 16 47 H 0.38 5.07 9.12 45.56 0.42 5.49 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -32.71 385.93 -9.07 -41.78 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.29 Total: 9.03 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -2.77 Total: 1.55 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.28 Total: -52.10 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.52 Total: -23.02 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.71 -9.07 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220969606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.659 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds