Wall clock time and date at job start Tue Mar 31 2020 18:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38162 * 120.02881 * 2 1 4 4 C 1.38250 * 120.05697 * 179.97438 * 3 2 1 5 5 C 1.38288 * 120.10951 * 0.03288 * 4 3 2 6 6 C 1.38125 * 120.05524 * 359.66834 * 5 4 3 7 7 C 1.38715 * 120.02728 * 179.97438 * 2 1 3 8 8 O 1.35895 * 120.05471 * 0.02868 * 7 2 1 9 9 C 1.42902 * 116.99680 * 179.97438 * 8 7 2 10 10 C 1.53002 * 109.47233 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47614 * 180.02562 * 10 9 8 12 12 O 1.21278 * 119.99857 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99994 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99815 * 179.97438 * 13 11 10 15 15 H 1.09007 * 110.78224 * 31.75692 * 14 13 11 16 16 C 1.54327 * 110.72029 * 268.52263 * 14 13 11 17 17 N 1.47024 * 107.26790 * 219.44504 * 16 14 13 18 18 C 1.36939 * 125.64645 * 178.97893 * 17 16 14 19 19 H 1.07999 * 119.99828 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00209 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99881 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00502 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46949 * 59.99834 * 22 20 18 24 24 H 1.48489 * 109.47273 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46810 * 300.00212 * 22 20 18 26 26 C 1.47524 * 108.71771 * 358.93887 * 17 16 14 27 27 C 1.54910 * 104.78261 * 24.11745 * 26 17 16 28 28 H 1.08990 * 111.00561 * 204.89950 * 27 26 17 29 29 O 1.42903 * 110.99677 * 81.09107 * 27 26 17 30 30 H 1.09006 * 109.46929 * 270.01645 * 1 2 3 31 31 H 1.08991 * 109.47463 * 30.01772 * 1 2 3 32 32 H 1.08998 * 109.47515 * 150.02084 * 1 2 3 33 33 H 1.08002 * 119.97438 * 359.96011 * 3 2 1 34 34 H 1.07996 * 119.94321 * 179.97438 * 4 3 2 35 35 H 1.08002 * 119.96748 * 179.97438 * 5 4 3 36 36 H 1.08006 * 120.02616 * 180.32395 * 6 5 4 37 37 H 1.08997 * 109.47764 * 59.99961 * 9 8 7 38 38 H 1.09002 * 109.47107 * 299.99182 * 9 8 7 39 39 H 1.08998 * 109.47174 * 59.99345 * 10 9 8 40 40 H 1.09009 * 109.47012 * 300.00136 * 10 9 8 41 41 H 0.96998 * 120.00211 * 359.97438 * 13 11 10 42 42 H 1.09005 * 109.88171 * 338.85690 * 16 14 13 43 43 H 1.09002 * 109.88419 * 99.86998 * 16 14 13 44 44 H 0.97003 * 120.00144 * 180.02562 * 21 20 18 45 45 H 1.09002 * 110.36567 * 265.31052 * 26 17 16 46 46 H 1.09002 * 110.41117 * 142.95688 * 26 17 16 47 47 H 0.96700 * 114.00311 * 64.58311 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1968 0.0005 5 6 4.2752 0.0009 0.0004 6 6 3.5886 -1.1976 0.0066 7 6 2.2011 -1.2010 0.0005 8 8 1.5233 -2.3788 0.0005 9 6 2.3034 -3.5761 0.0005 10 6 1.3732 -4.7909 0.0010 11 6 2.1958 -6.0536 0.0017 12 8 3.4068 -5.9884 0.0012 13 7 1.5856 -7.2554 0.0017 14 6 2.3853 -8.4829 0.0018 15 1 3.3225 -8.3339 0.5382 16 6 2.6521 -8.9607 -1.4411 17 7 2.5423 -10.4269 -1.4427 18 6 2.6906 -11.2371 -2.5366 19 1 2.9074 -10.8057 -3.5027 20 6 2.5624 -12.6129 -2.4039 21 7 2.2988 -13.1386 -1.2264 22 14 2.7641 -13.7182 -3.8962 23 1 4.1236 -13.5379 -4.4656 24 1 2.5803 -15.1350 -3.4913 25 1 1.7479 -13.3602 -4.9182 26 6 2.2467 -10.8809 -0.0705 27 6 1.5830 -9.6607 0.6152 28 1 1.7137 -9.7013 1.6965 29 8 0.1986 -9.5710 0.2724 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8897 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6584 2.1315 -0.0007 34 1 4.1195 2.1329 0.0001 35 1 5.3552 0.0041 0.0004 36 1 4.1314 -2.1314 0.0118 37 1 2.9322 -3.6002 0.8904 38 1 2.9322 -3.6001 -0.8896 39 1 0.7440 -4.7672 -0.8886 40 1 0.7446 -4.7668 0.8913 41 1 0.6170 -7.3076 0.0017 42 1 1.9111 -8.5328 -2.1164 43 1 3.6531 -8.6613 -1.7517 44 1 2.2096 -14.1001 -1.1335 45 1 3.1676 -11.1519 0.4460 46 1 1.5587 -11.7261 -0.0897 47 1 -0.3347 -10.3114 0.5926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220969606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:02 Heat of formation + Delta-G solvation = -95.393968 kcal Electronic energy + Delta-G solvation = -28007.264092 eV Core-core repulsion = 23962.099676 eV Total energy + Delta-G solvation = -4045.164416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.38734 -40.92803 -39.47673 -38.39739 -36.36088 -35.48503 -33.93952 -33.65036 -32.82086 -30.80873 -30.25066 -28.77871 -27.63444 -26.64170 -25.45937 -22.90283 -22.53195 -22.31479 -21.60124 -21.18847 -19.37454 -19.08509 -18.26094 -17.71791 -17.43652 -17.13140 -16.83655 -16.61620 -16.46657 -16.12305 -15.82156 -15.50996 -15.14018 -14.73521 -14.59142 -14.50460 -14.41740 -14.23023 -14.01712 -13.66371 -13.38548 -13.21667 -13.12989 -12.95694 -12.75737 -12.73364 -12.68973 -12.27162 -12.22043 -12.16914 -11.90833 -11.85102 -11.78047 -11.70780 -11.07850 -10.87007 -10.72826 -10.12329 -9.77073 -9.08244 -8.91808 -7.81922 -5.25333 0.37299 0.48713 1.45643 1.48443 1.53071 1.55138 1.72623 2.43626 2.54127 2.81108 3.21487 3.28988 3.56433 3.65538 3.84425 3.85995 3.89399 3.91007 3.96041 4.05941 4.21558 4.28252 4.30327 4.42526 4.45164 4.50039 4.65387 4.69535 4.73205 4.79035 4.81478 4.84413 4.87170 4.97261 4.99558 5.32681 5.34965 5.42177 5.43858 5.47004 5.53793 5.60706 5.70221 5.88254 6.24136 6.39220 6.54416 6.89224 7.07208 7.19978 7.71795 8.34367 9.19849 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024755 B = 0.001906 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.799991 B =14689.011505 C =15083.464029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.133 4.133 3 C -0.089 4.089 4 C -0.158 4.158 5 C -0.097 4.097 6 C -0.221 4.221 7 C 0.107 3.893 8 O -0.318 6.318 9 C 0.080 3.920 10 C -0.126 4.126 11 C 0.516 3.484 12 O -0.586 6.586 13 N -0.695 5.695 14 C 0.153 3.847 15 H 0.097 0.903 16 C 0.130 3.870 17 N -0.616 5.616 18 C -0.243 4.243 19 H 0.073 0.927 20 C -0.061 4.061 21 N -0.945 5.945 22 Si 0.981 3.019 23 H -0.282 1.282 24 H -0.289 1.289 25 H -0.278 1.278 26 C 0.125 3.875 27 C 0.091 3.909 28 H 0.093 0.907 29 O -0.562 6.562 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.125 0.875 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.421 0.579 42 H 0.025 0.975 43 H 0.010 0.990 44 H 0.250 0.750 45 H 0.000 1.000 46 H 0.092 0.908 47 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.446 26.176 7.111 27.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.134 4.134 3 C -0.106 4.106 4 C -0.176 4.176 5 C -0.115 4.115 6 C -0.240 4.240 7 C 0.062 3.938 8 O -0.232 6.232 9 C 0.004 3.996 10 C -0.165 4.165 11 C 0.304 3.696 12 O -0.466 6.466 13 N -0.346 5.346 14 C 0.047 3.953 15 H 0.115 0.885 16 C 0.004 3.996 17 N -0.343 5.343 18 C -0.371 4.371 19 H 0.091 0.909 20 C -0.254 4.254 21 N -0.594 5.594 22 Si 0.809 3.191 23 H -0.209 1.209 24 H -0.214 1.214 25 H -0.204 1.204 26 C 0.000 4.000 27 C 0.030 3.970 28 H 0.111 0.889 29 O -0.370 6.370 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.171 0.829 34 H 0.165 0.835 35 H 0.157 0.843 36 H 0.143 0.857 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.142 0.858 40 H 0.150 0.850 41 H 0.259 0.741 42 H 0.043 0.957 43 H 0.028 0.972 44 H 0.060 0.940 45 H 0.018 0.982 46 H 0.109 0.891 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.633 26.505 6.776 27.747 hybrid contribution 0.352 -1.813 -0.641 1.955 sum -4.281 24.692 6.135 25.800 Atomic orbital electron populations 1.20628 0.89333 1.03228 1.02761 1.19647 0.97693 0.90350 1.05704 1.21250 0.94456 0.97288 0.97639 1.21406 0.94528 0.98717 1.02900 1.21247 1.00902 0.91789 0.97527 1.21490 0.93302 1.00349 1.08863 1.19093 0.90826 0.85843 0.98068 1.85921 1.36041 1.12383 1.88819 1.22324 0.93254 0.81755 1.02243 1.21378 0.98626 0.88266 1.08258 1.20874 0.88191 0.85700 0.74834 1.90711 1.16215 1.87901 1.51794 1.45644 1.11402 1.03901 1.73691 1.21808 0.94797 0.83328 0.95389 0.88472 1.21656 0.97018 0.84969 0.96004 1.44572 1.83444 1.00624 1.05646 1.19348 1.41021 0.88639 0.88137 0.90890 1.25561 1.02228 0.97611 0.99978 1.69932 1.56257 1.10572 1.22648 0.85120 0.77941 0.77530 0.78515 1.20862 1.21428 1.20379 1.22544 0.97736 0.96230 0.83503 1.23266 0.82213 0.93896 0.97631 0.88931 1.86181 1.18057 1.50501 1.82303 0.90848 0.90003 0.91954 0.82882 0.83488 0.84290 0.85710 0.91682 0.92277 0.85824 0.85046 0.74114 0.95716 0.97225 0.94035 0.98216 0.89055 0.75369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.46 9.79 71.23 0.70 -0.76 16 2 C -0.13 -2.45 5.89 -19.77 -0.12 -2.57 16 3 C -0.09 -1.30 9.70 22.25 0.22 -1.09 16 4 C -0.16 -2.30 10.04 22.28 0.22 -2.07 16 5 C -0.10 -1.68 10.04 22.25 0.22 -1.46 16 6 C -0.22 -4.71 9.04 22.37 0.20 -4.51 16 7 C 0.11 2.35 6.66 22.51 0.15 2.50 16 8 O -0.32 -6.97 9.18 -92.37 -0.85 -7.82 16 9 C 0.08 1.73 4.03 71.98 0.29 2.02 16 10 C -0.13 -2.35 6.07 29.85 0.18 -2.17 16 11 C 0.52 14.15 7.83 87.66 0.69 14.84 16 12 O -0.59 -20.89 15.63 -3.02 -0.05 -20.94 16 13 N -0.69 -19.37 5.07 -436.92 -2.22 -21.58 16 14 C 0.15 5.44 3.20 46.18 0.15 5.58 16 15 H 0.10 3.59 7.55 -2.38 -0.02 3.57 16 16 C 0.13 5.80 6.99 86.73 0.61 6.41 16 17 N -0.62 -32.11 3.40 -691.71 -2.35 -34.46 16 18 C -0.24 -13.83 10.27 84.03 0.86 -12.96 16 19 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 21 N -0.94 -54.33 10.09 21.65 0.22 -54.11 16 22 Si 0.98 45.51 29.55 68.60 2.03 47.54 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 26 C 0.13 5.85 5.63 86.84 0.49 6.34 16 27 C 0.09 3.09 4.28 31.98 0.14 3.23 16 28 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 29 O -0.56 -17.24 12.24 -148.98 -1.82 -19.07 16 30 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.08 0.83 8.09 -2.39 -0.02 0.82 16 32 H 0.06 0.99 7.53 -2.39 -0.02 0.97 16 33 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 34 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.13 2.69 6.30 -2.91 -0.02 2.67 16 37 H 0.06 1.47 7.61 -2.39 -0.02 1.45 16 38 H 0.06 1.41 7.63 -2.39 -0.02 1.40 16 39 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.13 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.42 9.99 7.59 -92.71 -0.70 9.29 16 42 H 0.02 1.12 8.03 -2.38 -0.02 1.10 16 43 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 45 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.09 4.72 5.88 -2.39 -0.01 4.71 16 47 H 0.40 9.69 9.12 -74.06 -0.68 9.01 16 Total: -1.00 -72.27 385.93 0.04 -72.23 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -0.38 Total: 27.85 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.46 Total: 10.35 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -4.35 Total: -110.16 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -2.72 Total: -47.82 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -72.27 0.04 -72.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220969606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.161 kcal (2) G-P(sol) polarization free energy of solvation -72.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds