Wall clock time and date at job start Tue Mar 31 2020 19:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35985 * 117.00272 * 2 1 4 4 C 1.38720 * 119.99302 * 0.02562 * 3 2 1 5 5 C 1.38111 * 119.99633 * 180.02562 * 4 3 2 6 6 C 1.38720 * 120.00251 * 0.02562 * 5 4 3 7 7 O 1.35977 * 120.00321 * 180.02562 * 6 5 4 8 8 C 1.42905 * 116.99922 * 359.97438 * 7 6 5 9 9 C 1.50698 * 109.47129 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99902 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00207 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00008 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46948 * 174.94227 * 12 11 9 14 14 N 1.46505 * 115.55024 * 80.38544 * 13 12 11 15 15 C 1.36942 * 119.99583 * 65.27855 * 14 13 12 16 16 H 1.08007 * 119.99964 * 354.96284 * 15 14 13 17 17 C 1.38809 * 119.99798 * 174.68484 * 15 14 13 18 18 N 1.31619 * 120.00146 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99839 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47255 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47189 * 120.00123 * 19 17 15 22 22 H 1.48504 * 109.47055 * 240.00189 * 19 17 15 23 23 C 1.52999 * 117.50098 * 226.06177 * 13 12 11 24 24 C 1.53002 * 117.49982 * 294.71995 * 13 12 11 25 25 C 1.38682 * 119.99637 * 0.27456 * 6 5 4 26 26 C 1.38153 * 120.00044 * 359.47202 * 25 6 5 27 27 C 1.50698 * 120.00374 * 180.23228 * 26 25 6 28 28 H 1.09004 * 109.47183 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46984 * 299.99569 * 1 2 3 30 30 H 1.08998 * 109.47166 * 60.00002 * 1 2 3 31 31 H 1.07997 * 120.00378 * 359.97438 * 4 3 2 32 32 H 1.07997 * 120.00081 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.46899 * 60.00472 * 8 7 6 34 34 H 1.09002 * 109.47026 * 300.00380 * 8 7 6 35 35 H 0.97001 * 119.99786 * 359.97438 * 11 9 8 36 36 H 1.08994 * 109.47255 * 54.94194 * 12 11 9 37 37 H 1.08999 * 109.46673 * 294.93754 * 12 11 9 38 38 H 0.96998 * 120.00497 * 245.27841 * 14 13 12 39 39 H 0.97000 * 119.99696 * 180.02562 * 18 17 15 40 40 H 1.08998 * 117.49974 * 215.00780 * 23 13 12 41 41 H 1.09000 * 117.49520 * 0.02562 * 23 13 12 42 42 H 1.09000 * 117.49687 * 359.97438 * 24 13 12 43 43 H 1.08995 * 117.49858 * 144.97063 * 24 13 12 44 44 H 1.07993 * 119.99818 * 179.72795 * 25 6 5 45 45 H 1.09003 * 109.46689 * 270.27870 * 27 26 25 46 46 H 1.09003 * 109.46795 * 30.27483 * 27 26 25 47 47 H 1.08992 * 109.47407 * 150.27029 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9178 3.6055 0.0000 6 6 3.3031 3.6782 -0.0016 7 8 3.9204 4.8898 -0.0016 8 6 3.0804 6.0459 -0.0005 9 6 3.9346 7.2874 -0.0013 10 8 5.1437 7.1917 -0.0032 11 7 3.3550 8.5042 0.0001 12 6 4.1854 9.7111 -0.0013 13 6 3.2905 10.9457 -0.1265 14 7 2.6504 11.3906 1.1140 15 6 3.4147 11.8609 2.1484 16 1 4.4922 11.8283 2.0819 17 6 2.8046 12.3848 3.2798 18 7 1.4916 12.4290 3.3587 19 14 3.8473 13.0270 4.6904 20 1 5.2853 12.8643 4.3572 21 1 3.5494 14.4649 4.9115 22 1 3.5360 12.2616 5.9244 23 6 3.7072 12.0214 -1.1315 24 6 2.5058 11.1205 -1.4283 25 6 4.0584 2.5151 -0.0084 26 6 3.4312 1.2842 -0.0026 27 6 4.2520 0.0203 -0.0047 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 0.2123 2.3184 0.0005 32 1 1.3296 4.5113 0.0000 33 1 2.4520 6.0375 0.8901 34 1 2.4504 6.0381 -0.8899 35 1 2.3880 8.5808 0.0012 36 1 4.8760 9.6760 -0.8438 37 1 4.7501 9.7645 0.9295 38 1 1.6852 11.3520 1.2027 39 1 1.0653 12.7955 4.1492 40 1 3.5053 13.0600 -0.8698 41 1 4.6187 11.8493 -1.7039 42 1 2.6276 10.3561 -2.1957 43 1 1.5133 11.5660 -1.3618 44 1 5.1368 2.5717 -0.0141 45 1 4.4483 -0.2836 -1.0330 46 1 5.1970 0.1999 0.5078 47 1 3.7043 -0.7694 0.5094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269422690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:13 Heat of formation + Delta-G solvation = -44.964130 kcal Electronic energy + Delta-G solvation = -27622.630476 eV Core-core repulsion = 23579.652862 eV Total energy + Delta-G solvation = -4042.977614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.80095 -39.78151 -38.80767 -37.51512 -36.60138 -33.86315 -33.06370 -32.90463 -30.47819 -29.75684 -28.72081 -27.79594 -26.86426 -25.78787 -23.94538 -22.49631 -22.03578 -21.61366 -20.24422 -19.23823 -18.35134 -17.88271 -17.40298 -17.08832 -16.47312 -16.28234 -16.02387 -15.66650 -15.28780 -14.88781 -14.51388 -14.42270 -14.18644 -13.89079 -13.67544 -13.62335 -13.42085 -13.14522 -13.09615 -12.60030 -12.53444 -12.21779 -12.14016 -11.96356 -11.92860 -11.68419 -11.04940 -11.01927 -10.99342 -10.92586 -10.62338 -10.36657 -10.24955 -9.79040 -9.73394 -9.36945 -9.11247 -8.92220 -8.73320 -7.93061 -7.12452 -5.88594 -3.19400 0.97556 1.23022 2.57259 2.73855 3.01452 3.38195 3.44806 3.45391 3.46992 3.70192 4.35229 4.44756 4.45976 4.55306 4.70065 4.76180 4.81147 4.86136 4.91259 4.97225 5.02008 5.11926 5.16159 5.20598 5.24356 5.28347 5.43388 5.43768 5.57857 5.57909 5.69183 5.75591 5.97082 6.04117 6.05703 6.09061 6.15837 6.35873 6.38572 6.50267 6.59323 6.68859 6.75599 7.00474 7.24638 7.65799 7.71968 8.29504 8.37998 9.41126 9.93562 10.28795 11.33277 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.002059 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.998923 B =13597.012377 C =14024.033893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.085 3.915 4 C -0.163 4.163 5 C -0.177 4.177 6 C 0.103 3.897 7 O -0.288 6.288 8 C 0.042 3.958 9 C 0.512 3.488 10 O -0.527 6.527 11 N -0.707 5.707 12 C 0.149 3.851 13 C 0.126 3.874 14 N -0.689 5.689 15 C -0.239 4.239 16 H 0.074 0.926 17 C -0.010 4.010 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.185 4.185 24 C -0.185 4.185 25 C -0.113 4.113 26 C -0.077 4.077 27 C -0.105 4.105 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.402 0.598 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.388 0.612 39 H 0.256 0.744 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.140 0.860 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 -22.597 -10.575 25.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.041 3.959 4 C -0.181 4.181 5 C -0.196 4.196 6 C 0.058 3.942 7 O -0.200 6.200 8 C -0.037 4.037 9 C 0.296 3.704 10 O -0.403 6.403 11 N -0.359 5.359 12 C 0.024 3.976 13 C 0.032 3.968 14 N -0.329 5.329 15 C -0.369 4.369 16 H 0.091 0.909 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.226 4.226 24 C -0.223 4.223 25 C -0.132 4.132 26 C -0.077 4.077 27 C -0.162 4.162 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.236 0.764 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.223 0.777 39 H 0.066 0.934 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.158 0.842 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.999 -22.726 -10.410 25.076 hybrid contribution -1.016 0.863 0.909 1.613 sum -3.015 -21.863 -9.501 24.028 Atomic orbital electron populations 1.23031 0.78672 1.03798 1.01280 1.86053 1.21010 1.26601 1.89356 1.18681 0.91700 0.84263 1.01300 1.20996 0.99963 0.91583 1.05608 1.21071 0.93274 0.98599 1.06635 1.18920 0.90965 0.85426 0.98891 1.86178 1.34000 1.11060 1.88785 1.22499 0.93285 0.84235 1.03702 1.19902 0.88704 0.84192 0.77635 1.90733 1.14196 1.86695 1.48632 1.45751 1.10901 1.04920 1.74292 1.21302 0.92425 0.81680 1.02199 1.20161 0.98229 0.93838 0.84543 1.41795 1.06107 1.75004 1.09966 1.19220 0.90665 1.32612 0.94428 0.90855 1.24765 0.95685 1.01373 0.98757 1.69665 1.07391 1.51352 1.29495 0.86111 0.79457 0.78301 0.82307 1.20349 1.21778 1.21798 1.23372 0.97335 0.97857 1.04044 1.23085 0.97085 1.03352 0.98794 1.20157 1.00421 0.88421 1.04171 1.19021 0.90563 0.95371 1.02793 1.20630 0.98902 0.94100 1.02530 0.88356 0.92740 0.92788 0.85135 0.84976 0.88928 0.89215 0.76393 0.91874 0.90413 0.77743 0.93443 0.88524 0.89863 0.89462 0.88955 0.84238 0.91094 0.91323 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.32 -2.94 9.54 -19.69 -0.19 -3.12 16 3 C 0.09 0.88 6.66 -39.24 -0.26 0.62 16 4 C -0.16 -1.55 9.03 -39.45 -0.36 -1.91 16 5 C -0.18 -1.82 9.03 -39.45 -0.36 -2.18 16 6 C 0.10 1.27 6.69 -39.24 -0.26 1.01 16 7 O -0.29 -4.10 9.67 -39.58 -0.38 -4.48 16 8 C 0.04 0.50 5.22 36.00 0.19 0.69 16 9 C 0.51 8.07 7.91 -10.99 -0.09 7.98 16 10 O -0.53 -10.59 16.49 -14.36 -0.24 -10.83 16 11 N -0.71 -10.65 5.51 -60.30 -0.33 -10.98 16 12 C 0.15 2.62 5.73 -4.04 -0.02 2.60 16 13 C 0.13 2.31 2.15 -131.81 -0.28 2.03 16 14 N -0.69 -15.93 5.49 -47.22 -0.26 -16.19 16 15 C -0.24 -6.30 9.56 -15.06 -0.14 -6.44 16 16 H 0.07 1.93 7.77 -52.48 -0.41 1.52 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 18 N -0.93 -26.94 13.06 55.49 0.72 -26.21 16 19 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C -0.19 -3.11 10.11 -26.70 -0.27 -3.38 16 24 C -0.19 -2.80 10.14 -26.69 -0.27 -3.07 16 25 C -0.11 -1.29 9.64 -39.45 -0.38 -1.67 16 26 C -0.08 -0.80 5.89 -104.49 -0.62 -1.42 16 27 C -0.11 -0.85 9.79 36.00 0.35 -0.50 16 28 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.27 7.66 -51.93 -0.40 -0.12 16 30 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.13 0.93 6.29 -52.49 -0.33 0.60 16 32 H 0.13 1.09 6.29 -52.49 -0.33 0.76 16 33 H 0.09 0.94 7.66 -51.93 -0.40 0.54 16 34 H 0.09 0.80 7.66 -51.93 -0.40 0.40 16 35 H 0.40 5.21 8.48 -40.82 -0.35 4.87 16 36 H 0.06 1.06 7.94 -51.93 -0.41 0.65 16 37 H 0.08 1.60 7.73 -51.93 -0.40 1.20 16 38 H 0.39 9.49 8.04 -40.82 -0.33 9.17 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 41 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 47 H 0.07 0.58 7.52 -51.93 -0.39 0.19 16 LS Contribution 397.44 15.07 5.99 5.99 Total: -1.00 -33.20 397.44 -8.63 -41.83 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -7.05 Total: 11.85 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.87 Total: -4.85 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.13 Total: -53.38 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.81 Total: -18.43 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.20 -8.63 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269422690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.134 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds