Wall clock time and date at job start Tue Mar 31 2020 19:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35985 * 117.00272 * 2 1 4 4 C 1.38720 * 119.99302 * 0.02562 * 3 2 1 5 5 C 1.38111 * 119.99633 * 180.02562 * 4 3 2 6 6 C 1.38720 * 120.00251 * 0.02562 * 5 4 3 7 7 O 1.35977 * 120.00321 * 180.02562 * 6 5 4 8 8 C 1.42905 * 116.99922 * 359.97438 * 7 6 5 9 9 C 1.50698 * 109.47129 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99902 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00207 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00008 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46948 * 174.94227 * 12 11 9 14 14 N 1.46505 * 115.55024 * 80.38544 * 13 12 11 15 15 C 1.36942 * 119.99583 * 65.27855 * 14 13 12 16 16 H 1.08007 * 119.99964 * 354.96284 * 15 14 13 17 17 C 1.38809 * 119.99798 * 174.68484 * 15 14 13 18 18 N 1.31619 * 120.00146 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99839 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47255 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47189 * 120.00123 * 19 17 15 22 22 H 1.48504 * 109.47055 * 240.00189 * 19 17 15 23 23 C 1.52999 * 117.50098 * 226.06177 * 13 12 11 24 24 C 1.53002 * 117.49982 * 294.71995 * 13 12 11 25 25 C 1.38682 * 119.99637 * 0.27456 * 6 5 4 26 26 C 1.38153 * 120.00044 * 359.47202 * 25 6 5 27 27 C 1.50698 * 120.00374 * 180.23228 * 26 25 6 28 28 H 1.09004 * 109.47183 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46984 * 299.99569 * 1 2 3 30 30 H 1.08998 * 109.47166 * 60.00002 * 1 2 3 31 31 H 1.07997 * 120.00378 * 359.97438 * 4 3 2 32 32 H 1.07997 * 120.00081 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.46899 * 60.00472 * 8 7 6 34 34 H 1.09002 * 109.47026 * 300.00380 * 8 7 6 35 35 H 0.97001 * 119.99786 * 359.97438 * 11 9 8 36 36 H 1.08994 * 109.47255 * 54.94194 * 12 11 9 37 37 H 1.08999 * 109.46673 * 294.93754 * 12 11 9 38 38 H 0.96998 * 120.00497 * 245.27841 * 14 13 12 39 39 H 0.97000 * 119.99696 * 180.02562 * 18 17 15 40 40 H 1.08998 * 117.49974 * 215.00780 * 23 13 12 41 41 H 1.09000 * 117.49520 * 0.02562 * 23 13 12 42 42 H 1.09000 * 117.49687 * 359.97438 * 24 13 12 43 43 H 1.08995 * 117.49858 * 144.97063 * 24 13 12 44 44 H 1.07993 * 119.99818 * 179.72795 * 25 6 5 45 45 H 1.09003 * 109.46689 * 270.27870 * 27 26 25 46 46 H 1.09003 * 109.46795 * 30.27483 * 27 26 25 47 47 H 1.08992 * 109.47407 * 150.27029 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9178 3.6055 0.0000 6 6 3.3031 3.6782 -0.0016 7 8 3.9204 4.8898 -0.0016 8 6 3.0804 6.0459 -0.0005 9 6 3.9346 7.2874 -0.0013 10 8 5.1437 7.1917 -0.0032 11 7 3.3550 8.5042 0.0001 12 6 4.1854 9.7111 -0.0013 13 6 3.2905 10.9457 -0.1265 14 7 2.6504 11.3906 1.1140 15 6 3.4147 11.8609 2.1484 16 1 4.4922 11.8283 2.0819 17 6 2.8046 12.3848 3.2798 18 7 1.4916 12.4290 3.3587 19 14 3.8473 13.0270 4.6904 20 1 5.2853 12.8643 4.3572 21 1 3.5494 14.4649 4.9115 22 1 3.5360 12.2616 5.9244 23 6 3.7072 12.0214 -1.1315 24 6 2.5058 11.1205 -1.4283 25 6 4.0584 2.5151 -0.0084 26 6 3.4312 1.2842 -0.0026 27 6 4.2520 0.0203 -0.0047 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 0.2123 2.3184 0.0005 32 1 1.3296 4.5113 0.0000 33 1 2.4520 6.0375 0.8901 34 1 2.4504 6.0381 -0.8899 35 1 2.3880 8.5808 0.0012 36 1 4.8760 9.6760 -0.8438 37 1 4.7501 9.7645 0.9295 38 1 1.6852 11.3520 1.2027 39 1 1.0653 12.7955 4.1492 40 1 3.5053 13.0600 -0.8698 41 1 4.6187 11.8493 -1.7039 42 1 2.6276 10.3561 -2.1957 43 1 1.5133 11.5660 -1.3618 44 1 5.1368 2.5717 -0.0141 45 1 4.4483 -0.2836 -1.0330 46 1 5.1970 0.1999 0.5078 47 1 3.7043 -0.7694 0.5094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269422690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:11 Heat of formation + Delta-G solvation = -66.684789 kcal Electronic energy + Delta-G solvation = -27623.572355 eV Core-core repulsion = 23579.652862 eV Total energy + Delta-G solvation = -4043.919493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.62418 -40.85797 -39.80264 -38.89875 -37.41250 -35.35722 -34.84010 -33.61868 -31.65976 -31.34525 -29.67265 -28.40412 -27.54212 -27.00955 -25.93105 -23.32885 -23.20276 -22.51369 -21.44532 -20.68616 -19.17164 -19.13481 -18.67809 -18.36448 -17.49709 -17.26704 -17.05768 -16.64439 -16.56762 -16.06289 -15.67493 -15.55959 -15.42345 -15.12232 -14.94057 -14.64998 -14.36936 -14.29075 -14.00115 -13.75740 -13.57543 -13.30752 -13.04253 -12.96764 -12.88326 -12.84732 -12.56582 -12.42063 -12.27973 -12.18536 -12.00447 -11.71251 -11.59805 -11.36997 -11.10983 -10.97945 -10.59721 -10.09485 -9.86872 -9.03927 -8.71085 -7.97673 -5.25898 0.22157 0.43680 1.44377 1.46573 1.48935 1.55010 1.57120 2.41793 2.51116 2.65014 2.67731 3.09973 3.36844 3.59348 3.65753 3.77493 3.82102 3.85141 3.99754 4.10156 4.15055 4.20398 4.26439 4.31182 4.36396 4.44007 4.49817 4.59433 4.74562 4.78121 4.82876 4.83542 4.87391 4.93739 5.01609 5.04559 5.18675 5.23805 5.31286 5.35791 5.37098 5.43620 5.55179 5.62378 6.24342 6.26049 6.48116 6.56067 7.17212 7.32568 8.05482 8.29188 9.24715 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.002059 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.998923 B =13597.012377 C =14024.033893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.079 3.921 4 C -0.164 4.164 5 C -0.176 4.176 6 C 0.080 3.920 7 O -0.318 6.318 8 C 0.046 3.954 9 C 0.509 3.491 10 O -0.577 6.577 11 N -0.697 5.697 12 C 0.160 3.840 13 C 0.100 3.900 14 N -0.698 5.698 15 C -0.228 4.228 16 H 0.069 0.931 17 C -0.068 4.068 18 N -0.963 5.963 19 Si 0.961 3.039 20 H -0.272 1.272 21 H -0.293 1.293 22 H -0.295 1.295 23 C -0.187 4.187 24 C -0.149 4.149 25 C -0.128 4.128 26 C -0.089 4.089 27 C -0.103 4.103 28 H 0.117 0.883 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.113 0.887 34 H 0.127 0.873 35 H 0.414 0.586 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.379 0.621 39 H 0.251 0.749 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.093 0.907 44 H 0.137 0.863 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.551 -23.806 -11.956 27.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.034 3.966 4 C -0.182 4.182 5 C -0.195 4.195 6 C 0.036 3.964 7 O -0.232 6.232 8 C -0.031 4.031 9 C 0.296 3.704 10 O -0.457 6.457 11 N -0.349 5.349 12 C 0.034 3.966 13 C 0.008 3.992 14 N -0.336 5.336 15 C -0.360 4.360 16 H 0.087 0.913 17 C -0.261 4.261 18 N -0.613 5.613 19 Si 0.792 3.208 20 H -0.197 1.197 21 H -0.220 1.220 22 H -0.223 1.223 23 C -0.227 4.227 24 C -0.187 4.187 25 C -0.147 4.147 26 C -0.090 4.090 27 C -0.159 4.159 28 H 0.136 0.864 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.174 0.826 32 H 0.172 0.828 33 H 0.131 0.869 34 H 0.145 0.855 35 H 0.251 0.749 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.212 0.788 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.124 0.876 42 H 0.138 0.862 43 H 0.112 0.888 44 H 0.155 0.845 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.268 -23.950 -11.832 26.912 hybrid contribution -0.636 1.142 1.253 1.811 sum -3.903 -22.808 -10.579 25.443 Atomic orbital electron populations 1.23319 0.76782 1.05470 1.02095 1.86042 1.23004 1.26165 1.89148 1.18881 0.91880 0.85053 1.00800 1.21305 1.01279 0.90982 1.04653 1.21321 0.92537 0.99853 1.05778 1.19120 0.92006 0.84757 1.00560 1.86119 1.35496 1.12070 1.89474 1.22565 0.92337 0.81857 1.06386 1.20605 0.88456 0.85278 0.76095 1.90709 1.16573 1.87436 1.50937 1.45643 1.11324 1.04233 1.73713 1.20997 0.92458 0.82434 1.00684 1.20326 1.00347 0.94591 0.83968 1.41816 1.05552 1.75111 1.11150 1.19437 0.90731 1.30746 0.95105 0.91339 1.25400 0.96642 1.02936 1.01074 1.69777 1.08520 1.53159 1.29886 0.85248 0.78490 0.77383 0.79724 1.19662 1.21973 1.22251 1.23385 0.99418 0.96557 1.03340 1.23161 0.96317 1.02634 0.96582 1.20290 1.00572 0.88939 1.04876 1.19275 0.91306 0.95687 1.02693 1.20650 0.98940 0.93202 1.03129 0.86439 0.92013 0.91772 0.82601 0.82778 0.86889 0.85500 0.74907 0.90768 0.94214 0.78760 0.94028 0.90392 0.87619 0.86182 0.88844 0.84512 0.90324 0.90643 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.54 9.54 -93.38 -0.89 -6.43 16 3 C 0.08 1.51 6.66 22.49 0.15 1.66 16 4 C -0.16 -2.74 9.03 22.35 0.20 -2.53 16 5 C -0.18 -3.25 9.03 22.35 0.20 -3.05 16 6 C 0.08 1.91 6.69 22.49 0.15 2.06 16 7 O -0.32 -8.89 9.67 -74.26 -0.72 -9.60 16 8 C 0.05 1.02 5.22 71.24 0.37 1.39 16 9 C 0.51 15.61 7.91 87.66 0.69 16.30 16 10 O -0.58 -23.47 16.49 15.99 0.26 -23.20 16 11 N -0.70 -20.02 5.51 -463.06 -2.55 -22.57 16 12 C 0.16 5.52 5.73 86.38 0.49 6.02 16 13 C 0.10 3.54 2.15 3.60 0.01 3.54 16 14 N -0.70 -32.17 5.49 -303.32 -1.67 -33.84 16 15 C -0.23 -12.15 9.56 84.03 0.80 -11.35 16 16 H 0.07 3.65 7.77 -2.91 -0.02 3.63 16 17 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 18 N -0.96 -56.41 13.06 21.65 0.28 -56.13 16 19 Si 0.96 45.83 29.55 68.60 2.03 47.86 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 23 C -0.19 -5.91 10.11 30.62 0.31 -5.60 16 24 C -0.15 -4.05 10.14 30.62 0.31 -3.74 16 25 C -0.13 -2.93 9.64 22.36 0.22 -2.72 16 26 C -0.09 -1.81 5.89 -19.78 -0.12 -1.92 16 27 C -0.10 -1.60 9.79 71.24 0.70 -0.91 16 28 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 30 H 0.06 0.44 7.66 -2.39 -0.02 0.42 16 31 H 0.16 1.70 6.29 -2.91 -0.02 1.68 16 32 H 0.15 2.02 6.29 -2.91 -0.02 2.00 16 33 H 0.11 2.01 7.66 -2.39 -0.02 1.99 16 34 H 0.13 1.82 7.66 -2.39 -0.02 1.80 16 35 H 0.41 9.82 8.48 -92.71 -0.79 9.04 16 36 H 0.07 2.40 7.94 -2.39 -0.02 2.38 16 37 H 0.04 1.67 7.73 -2.39 -0.02 1.65 16 38 H 0.38 18.57 8.04 -92.71 -0.75 17.83 16 39 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 40 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.11 2.86 8.08 -2.39 -0.02 2.84 16 42 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 45 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 47 H 0.07 1.12 7.52 -2.39 -0.02 1.10 16 Total: -1.00 -73.68 397.44 2.29 -71.39 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -0.53 Total: 35.40 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 6.07 Total: -2.88 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -3.94 Total: -112.54 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -1.34 Total: -39.23 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -73.68 2.29 -71.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269422690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.709 kcal (2) G-P(sol) polarization free energy of solvation -73.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds