Wall clock time and date at job start Tue Mar 31 2020 19:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35801 * 117.00182 * 2 1 4 4 C 1.38836 * 119.92763 * 0.02562 * 3 2 1 5 5 C 1.37782 * 120.14790 * 180.02562 * 4 3 2 6 6 C 1.39702 * 120.00824 * 0.23251 * 5 4 3 7 7 C 1.47605 * 120.07156 * 179.72588 * 6 5 4 8 8 O 1.21595 * 119.99580 * 186.22504 * 7 6 5 9 9 N 1.34769 * 120.00301 * 6.22029 * 7 6 5 10 10 C 1.46500 * 120.00173 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47199 * 179.97438 * 10 9 7 12 12 C 1.31008 * 119.99994 * 124.99890 * 11 10 9 13 13 C 1.50697 * 119.99994 * 179.97438 * 12 11 10 14 14 N 1.46507 * 109.47005 * 125.00211 * 13 12 11 15 15 C 1.36937 * 120.00022 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00027 * 359.97438 * 15 14 13 17 17 C 1.38807 * 119.99813 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00150 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00050 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46952 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47198 * 119.99426 * 19 17 15 22 22 H 1.48491 * 109.47138 * 239.99826 * 19 17 15 23 23 C 1.39737 * 119.85190 * 359.46547 * 6 5 4 24 24 C 1.50702 * 120.07294 * 180.29904 * 23 6 5 25 25 C 1.38129 * 119.85143 * 0.55767 * 23 6 5 26 26 O 1.36006 * 120.00341 * 179.70087 * 25 23 6 27 27 C 1.42901 * 116.99800 * 270.02170 * 26 25 23 28 28 H 1.08993 * 109.46773 * 59.99993 * 1 2 3 29 29 H 1.09004 * 109.46901 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46727 * 299.99743 * 1 2 3 31 31 H 1.07997 * 119.92178 * 359.97438 * 4 3 2 32 32 H 1.08006 * 119.99621 * 179.97438 * 5 4 3 33 33 H 0.96998 * 120.00360 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.47027 * 300.00205 * 10 9 7 35 35 H 1.09001 * 109.47528 * 59.99976 * 10 9 7 36 36 H 1.08001 * 120.00229 * 305.00234 * 11 10 9 37 37 H 1.08001 * 119.99777 * 0.02562 * 12 11 10 38 38 H 1.08998 * 109.47093 * 244.99749 * 13 12 11 39 39 H 1.08997 * 109.47153 * 5.00435 * 13 12 11 40 40 H 0.97001 * 119.99754 * 359.97438 * 14 13 12 41 41 H 0.97003 * 119.99818 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.46891 * 276.83927 * 24 23 6 43 43 H 1.09004 * 109.47035 * 36.83095 * 24 23 6 44 44 H 1.08997 * 109.47011 * 156.83542 * 24 23 6 45 45 H 1.08996 * 109.47343 * 59.99878 * 27 26 25 46 46 H 1.08998 * 109.46805 * 180.02562 * 27 26 25 47 47 H 1.09002 * 109.47007 * 299.99309 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2880 2.3734 0.0005 5 6 1.9088 3.6034 0.0000 6 6 3.3036 3.6821 -0.0060 7 6 3.9701 4.9991 -0.0127 8 8 5.1782 5.0684 -0.1321 9 7 3.2398 6.1246 0.1134 10 6 3.9013 7.4318 0.1062 11 6 2.8685 8.5183 0.2607 12 6 2.9826 9.3982 1.2245 13 6 1.9501 10.4851 1.3786 14 7 1.4051 10.4517 2.7381 15 6 0.4442 11.3525 3.1129 16 1 0.0885 12.0878 2.4064 17 6 -0.0717 11.3211 4.4011 18 7 0.3622 10.4253 5.2623 19 14 -1.3820 12.5504 4.9127 20 1 -1.6948 13.4449 3.7693 21 1 -2.6100 11.8230 5.3230 22 1 -0.8825 13.3607 6.0523 23 6 4.0663 2.5112 -0.0001 24 6 5.5713 2.5903 0.0003 25 6 3.4378 1.2812 -0.0001 26 8 4.1771 0.1397 -0.0005 27 6 4.5297 -0.4044 -1.2740 28 1 -0.3632 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 0.2097 2.3141 0.0005 32 1 1.3171 4.5070 0.0000 33 1 2.2761 6.0694 0.2090 34 1 4.6109 7.4844 0.9319 35 1 4.4309 7.5659 -0.8370 36 1 2.0343 8.5716 -0.4232 37 1 3.8170 9.3452 1.9082 38 1 2.4135 11.4548 1.1967 39 1 1.1456 10.3263 0.6607 40 1 1.7244 9.7910 3.3725 41 1 0.0013 10.4032 6.1624 42 1 5.9282 2.7268 -1.0206 43 1 5.8906 3.4337 0.6126 44 1 5.9834 1.6678 0.4090 45 1 5.1174 0.3254 -1.8308 46 1 5.1167 -1.3116 -1.1316 47 1 3.6234 -0.6422 -1.8310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321113269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:38 Heat of formation + Delta-G solvation = -72.768490 kcal Electronic energy + Delta-G solvation = -27583.793105 eV Core-core repulsion = 23539.609803 eV Total energy + Delta-G solvation = -4044.183302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.94129 -40.65511 -39.29282 -37.91197 -37.52165 -36.29904 -34.52013 -33.19593 -32.53983 -31.34143 -29.32144 -28.26747 -28.13510 -27.07123 -25.94238 -24.43076 -23.54261 -22.40137 -21.74386 -20.77321 -19.37771 -19.07044 -18.69119 -18.09688 -17.51523 -17.11106 -16.79403 -16.67064 -16.39247 -16.11178 -15.82818 -15.73021 -15.28786 -15.12236 -14.96324 -14.70643 -14.53083 -14.43946 -13.99957 -13.85667 -13.49141 -13.37507 -13.18889 -13.15283 -12.90481 -12.82962 -12.73882 -12.71231 -12.14699 -12.05321 -11.98903 -11.97583 -11.76540 -11.15357 -11.05517 -10.80005 -10.32791 -10.00684 -9.78810 -9.29568 -9.00990 -7.96022 -5.25845 -0.26694 0.03696 1.06086 1.48507 1.49476 1.59644 1.67666 2.14023 2.29487 2.50586 2.57148 2.85732 3.38013 3.64725 3.69486 3.72618 3.83396 3.95773 4.11025 4.21455 4.24456 4.33069 4.38671 4.43180 4.45037 4.46537 4.49394 4.64747 4.70271 4.72893 4.73257 4.74479 4.78438 4.91623 4.94009 5.02029 5.07206 5.10142 5.30031 5.40253 5.47144 5.48411 5.67484 5.84901 6.04703 6.26249 6.49707 6.53232 7.16314 7.32259 8.06682 8.30300 9.27624 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.002037 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.623707 B =13741.854038 C =15127.539227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.320 6.320 3 C 0.137 3.863 4 C -0.207 4.207 5 C -0.036 4.036 6 C -0.182 4.182 7 C 0.559 3.441 8 O -0.566 6.566 9 N -0.712 5.712 10 C 0.159 3.841 11 C -0.161 4.161 12 C -0.132 4.132 13 C 0.173 3.827 14 N -0.745 5.745 15 C -0.246 4.246 16 H 0.079 0.921 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.976 3.024 20 H -0.264 1.264 21 H -0.292 1.292 22 H -0.294 1.294 23 C -0.016 4.016 24 C -0.110 4.110 25 C 0.031 3.969 26 O -0.338 6.338 27 C 0.030 3.970 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.170 0.830 32 H 0.160 0.840 33 H 0.412 0.588 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.133 0.867 37 H 0.107 0.893 38 H 0.030 0.970 39 H 0.035 0.965 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.049 0.951 46 H 0.113 0.887 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.603 -23.370 -17.577 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.233 6.233 3 C 0.089 3.911 4 C -0.225 4.225 5 C -0.055 4.055 6 C -0.185 4.185 7 C 0.349 3.651 8 O -0.447 6.447 9 N -0.364 5.364 10 C 0.036 3.964 11 C -0.180 4.180 12 C -0.151 4.151 13 C 0.047 3.953 14 N -0.387 5.387 15 C -0.378 4.378 16 H 0.097 0.903 17 C -0.270 4.270 18 N -0.620 5.620 19 Si 0.805 3.195 20 H -0.188 1.188 21 H -0.219 1.219 22 H -0.222 1.222 23 C -0.018 4.018 24 C -0.166 4.166 25 C -0.013 4.013 26 O -0.255 6.255 27 C -0.064 4.064 28 H 0.092 0.908 29 H 0.138 0.862 30 H 0.087 0.913 31 H 0.187 0.813 32 H 0.177 0.823 33 H 0.249 0.751 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.150 0.850 37 H 0.125 0.875 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.206 0.794 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.131 0.869 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.478 -23.442 -17.573 29.503 hybrid contribution -1.092 0.630 0.749 1.466 sum 2.385 -22.812 -16.824 28.445 Atomic orbital electron populations 1.23497 0.75819 1.06031 1.02875 1.86115 1.23890 1.25906 1.87367 1.19803 0.91392 0.85944 0.93948 1.21395 1.01883 0.90534 1.08718 1.21422 0.92354 0.99073 0.92657 1.19551 0.94315 0.92067 1.12600 1.18281 0.86437 0.84439 0.75964 1.90719 1.15017 1.87533 1.51476 1.45852 1.11710 1.05126 1.73728 1.20255 0.93744 0.79970 1.02441 1.22778 1.00223 0.95527 0.99505 1.23014 0.98355 0.96523 0.97232 1.19919 0.93149 0.95555 0.86637 1.42549 1.46806 1.39208 1.10158 1.19711 1.12991 1.09095 0.96002 0.90303 1.25625 1.03190 1.01476 0.96688 1.69833 1.47750 1.38903 1.05563 0.85035 0.78336 0.78249 0.77898 1.18838 1.21869 1.22176 1.20177 0.97623 0.90445 0.93548 1.20887 0.89250 1.03117 1.03351 1.17736 0.86999 0.86351 1.10221 1.86057 1.70618 1.37947 1.30877 1.23184 1.00192 0.99307 0.83703 0.90788 0.86158 0.91343 0.81266 0.82285 0.75069 0.92108 0.89901 0.84972 0.87544 0.95223 0.94716 0.79430 0.93967 0.90478 0.90030 0.91160 0.93226 0.86878 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.32 -5.68 10.27 -77.30 -0.79 -6.47 16 3 C 0.14 2.69 6.71 22.69 0.15 2.84 16 4 C -0.21 -3.19 9.01 22.30 0.20 -2.99 16 5 C -0.04 -0.61 9.51 22.52 0.21 -0.40 16 6 C -0.18 -4.12 5.87 -20.09 -0.12 -4.24 16 7 C 0.56 14.36 7.69 86.72 0.67 15.02 16 8 O -0.57 -17.75 13.35 -4.01 -0.05 -17.81 16 9 N -0.71 -15.54 5.50 -469.94 -2.58 -18.12 16 10 C 0.16 3.69 6.11 85.63 0.52 4.21 16 11 C -0.16 -3.90 9.24 25.64 0.24 -3.66 16 12 C -0.13 -4.06 9.24 25.64 0.24 -3.83 16 13 C 0.17 6.66 6.70 85.63 0.57 7.23 16 14 N -0.74 -37.57 5.59 -347.18 -1.94 -39.51 16 15 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 16 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 17 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 18 N -0.97 -59.24 13.06 21.65 0.28 -58.95 16 19 Si 0.98 45.57 29.55 68.60 2.03 47.60 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 C -0.02 -0.39 5.92 -19.53 -0.12 -0.51 16 24 C -0.11 -2.62 8.55 71.24 0.61 -2.01 16 25 C 0.03 0.72 5.70 22.52 0.13 0.85 16 26 O -0.34 -7.67 9.12 -79.60 -0.73 -8.40 16 27 C 0.03 0.46 11.13 113.37 1.26 1.72 16 28 H 0.07 0.40 7.65 -2.39 -0.02 0.38 16 29 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.07 0.48 7.65 -2.39 -0.02 0.46 16 31 H 0.17 1.52 6.27 -2.91 -0.02 1.50 16 32 H 0.16 1.80 6.44 -2.91 -0.02 1.78 16 33 H 0.41 7.12 6.52 -92.71 -0.60 6.51 16 34 H 0.06 1.59 7.79 -2.39 -0.02 1.57 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 36 H 0.13 2.79 7.84 -2.91 -0.02 2.77 16 37 H 0.11 3.35 7.84 -2.91 -0.02 3.32 16 38 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 39 H 0.03 1.28 7.79 -2.39 -0.02 1.26 16 40 H 0.37 20.21 7.66 -92.71 -0.71 19.50 16 41 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 42 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.08 2.26 5.88 -2.38 -0.01 2.25 16 44 H 0.07 1.55 7.33 -2.39 -0.02 1.53 16 45 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -73.78 394.26 2.89 -70.90 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: -0.31 Total: 32.07 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 6.99 Total: -1.30 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -4.24 Total: -116.59 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.57 Total: -32.67 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -73.78 2.89 -70.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321113269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.873 kcal (2) G-P(sol) polarization free energy of solvation -73.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds