Wall clock time and date at job start Tue Mar 31 2020 18:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38281 * 119.97254 * 2 1 4 4 C 1.38251 * 120.11067 * 179.97438 * 3 2 1 5 5 C 1.38163 * 120.05527 * 0.30253 * 4 3 2 6 6 C 1.38718 * 119.94360 * 359.46174 * 5 4 3 7 7 O 1.35897 * 120.05500 * 180.27446 * 6 5 4 8 8 C 1.42901 * 117.00044 * 0.23837 * 7 6 5 9 9 C 1.53001 * 109.47021 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47119 * 185.00036 * 9 8 7 11 11 C 1.53003 * 109.47120 * 304.99891 * 9 8 7 12 12 N 1.46500 * 109.47159 * 64.99972 * 9 8 7 13 13 C 1.34776 * 120.00002 * 154.99960 * 12 9 8 14 14 O 1.21346 * 120.00225 * 359.97438 * 13 12 9 15 15 C 1.49446 * 119.99763 * 180.02562 * 13 12 9 16 16 O 1.21351 * 120.00335 * 0.02562 * 15 13 12 17 17 N 1.34780 * 120.00099 * 179.97438 * 15 13 12 18 18 C 1.46500 * 120.00337 * 179.97438 * 17 15 13 19 19 C 1.52997 * 109.47146 * 180.02562 * 18 17 15 20 20 C 1.50696 * 109.47515 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99568 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00514 * 180.02562 * 20 19 18 23 23 N 1.31507 * 119.99872 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99906 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47142 * 90.00180 * 24 22 20 26 26 H 1.48502 * 109.46777 * 209.99694 * 24 22 20 27 27 H 1.48501 * 109.47129 * 329.99844 * 24 22 20 28 28 C 1.38126 * 119.97006 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47005 * 90.00268 * 1 2 3 30 30 H 1.09005 * 109.47693 * 209.99913 * 1 2 3 31 31 H 1.09000 * 109.47521 * 330.00431 * 1 2 3 32 32 H 1.07998 * 119.94637 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.96904 * 180.02562 * 4 3 2 34 34 H 1.07998 * 120.03041 * 179.72211 * 5 4 3 35 35 H 1.08996 * 109.47356 * 299.99739 * 8 7 6 36 36 H 1.08997 * 109.46939 * 59.99734 * 8 7 6 37 37 H 1.09000 * 109.47402 * 179.97438 * 11 9 8 38 38 H 1.08997 * 109.47348 * 299.99868 * 11 9 8 39 39 H 1.09002 * 109.47006 * 60.00076 * 11 9 8 40 40 H 0.97002 * 120.00149 * 334.99983 * 12 9 8 41 41 H 0.97000 * 119.99812 * 0.02562 * 17 15 13 42 42 H 1.08996 * 109.47180 * 300.00235 * 18 17 15 43 43 H 1.08997 * 109.47232 * 60.00603 * 18 17 15 44 44 H 1.09002 * 109.47571 * 300.00206 * 19 18 17 45 45 H 1.09006 * 109.47195 * 60.00393 * 19 18 17 46 46 H 0.96997 * 119.99958 * 180.02562 * 23 22 20 47 47 H 1.07998 * 120.02943 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2012 0.0005 5 6 4.2751 0.0070 -0.0052 6 6 3.5845 -1.1960 -0.0003 7 8 4.2657 -2.3719 -0.0003 8 6 5.6926 -2.2950 -0.0003 9 6 6.2794 -3.7080 0.0003 10 1 7.3643 -3.6509 0.0899 11 6 5.7109 -4.4959 1.1823 12 7 5.9277 -4.3834 -1.2512 13 6 6.6989 -5.3865 -1.7155 14 8 7.6849 -5.7299 -1.0971 15 6 6.3404 -6.0750 -2.9925 16 8 5.3551 -5.7307 -3.6117 17 7 7.1119 -7.0778 -3.4571 18 6 6.7601 -7.7532 -4.7086 19 6 7.7907 -8.8440 -5.0066 20 6 7.4286 -9.5392 -6.2937 21 1 6.5513 -9.2333 -6.8443 22 6 8.2172 -10.5658 -6.7683 23 7 9.2857 -10.9379 -6.0981 24 14 7.7686 -11.4270 -8.3641 25 1 8.4215 -10.7317 -9.5024 26 1 8.2329 -12.8367 -8.3132 27 1 6.2950 -11.3973 -8.5453 28 6 2.1970 -1.1966 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3635 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6565 2.1324 -0.0004 33 1 4.1175 2.1381 0.0010 34 1 5.3551 0.0101 -0.0094 35 1 6.0278 -1.7624 -0.8903 36 1 6.0277 -1.7624 0.8897 37 1 6.1286 -5.5027 1.1825 38 1 5.9726 -3.9934 2.1134 39 1 4.6261 -4.5530 1.0927 40 1 5.1397 -4.1087 -1.7458 41 1 7.8996 -7.3528 -2.9624 42 1 5.7722 -8.2036 -4.6132 43 1 6.7520 -7.0285 -5.5228 44 1 8.7789 -8.3940 -5.1019 45 1 7.7985 -9.5687 -4.1924 46 1 9.8407 -11.6599 -6.4322 47 1 1.6570 -2.1319 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321810508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:26 Heat of formation + Delta-G solvation = -101.627023 kcal Electronic energy + Delta-G solvation = -27240.494391 eV Core-core repulsion = 23195.059690 eV Total energy + Delta-G solvation = -4045.434701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.80443 -40.29734 -38.62983 -37.99778 -35.86818 -34.94546 -32.90259 -32.85996 -31.63973 -30.27739 -29.79011 -27.67960 -26.89592 -25.76841 -23.92722 -22.92524 -22.21055 -21.10307 -20.68158 -20.25068 -18.44272 -18.15914 -17.03655 -16.56318 -16.39742 -16.27160 -16.06780 -15.72632 -15.21698 -14.85142 -14.68482 -14.48007 -14.35186 -14.04198 -13.93221 -13.67117 -13.51377 -13.40209 -13.00285 -12.67215 -12.52767 -12.49210 -12.32036 -12.03489 -11.92455 -11.50006 -11.47507 -11.29529 -11.23183 -11.15786 -11.06119 -10.66633 -10.39638 -9.79701 -9.45565 -9.41986 -9.19502 -9.16827 -8.69192 -8.56000 -8.41656 -6.10087 -4.13700 0.93292 1.08039 1.60151 2.47111 2.72485 3.29118 3.35389 3.37400 3.39198 3.42702 3.85568 4.15521 4.40280 4.40781 4.47667 4.52372 4.64708 4.75260 4.76540 4.83321 4.93216 5.01732 5.07206 5.15026 5.21863 5.26829 5.33142 5.39426 5.52111 5.62920 5.69938 5.91164 5.99229 6.05233 6.12797 6.18556 6.21372 6.24250 6.38822 6.60088 6.69748 7.01364 7.05199 7.46833 7.57928 7.66457 7.87255 7.92031 8.21435 8.34545 8.91852 9.51187 11.01370 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019579 B = 0.001745 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.779463 B =16040.880474 C =16958.386312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.161 4.161 4 C -0.077 4.077 5 C -0.216 4.216 6 C 0.136 3.864 7 O -0.309 6.309 8 C 0.050 3.950 9 C 0.146 3.854 10 H 0.111 0.889 11 C -0.164 4.164 12 N -0.700 5.700 13 C 0.510 3.490 14 O -0.520 6.520 15 C 0.497 3.503 16 O -0.532 6.532 17 N -0.686 5.686 18 C 0.119 3.881 19 C 0.011 3.989 20 C -0.523 4.523 21 H 0.060 0.940 22 C 0.059 3.941 23 N -0.892 5.892 24 Si 0.898 3.102 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.272 1.272 28 C -0.152 4.152 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.417 0.583 41 H 0.410 0.590 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.263 0.737 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.952 24.974 17.497 32.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.048 4.048 3 C -0.179 4.179 4 C -0.095 4.095 5 C -0.234 4.234 6 C 0.091 3.909 7 O -0.223 6.223 8 C -0.025 4.025 9 C 0.042 3.958 10 H 0.129 0.871 11 C -0.222 4.222 12 N -0.355 5.355 13 C 0.291 3.709 14 O -0.396 6.396 15 C 0.276 3.724 16 O -0.410 6.410 17 N -0.337 5.337 18 C -0.003 4.003 19 C -0.027 4.027 20 C -0.562 4.562 21 H 0.078 0.922 22 C -0.143 4.143 23 N -0.530 5.530 24 Si 0.726 3.274 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.197 1.197 28 C -0.171 4.171 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.253 0.747 41 H 0.246 0.754 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.853 24.613 17.480 32.432 hybrid contribution 0.152 -0.327 -0.852 0.925 sum -11.701 24.287 16.628 31.674 Atomic orbital electron populations 1.20828 0.90686 1.03023 1.02750 1.19727 0.96134 0.92257 0.96661 1.20954 0.94184 0.97588 1.05192 1.20929 0.94187 0.97420 0.96939 1.21254 1.00275 0.92297 1.09614 1.18960 0.91716 0.84550 0.95677 1.86081 1.19559 1.28126 1.88501 1.23180 0.78939 0.97627 1.02796 1.21154 1.00701 0.89374 0.84562 0.87124 1.22131 1.02445 1.01039 0.96594 1.45809 1.29983 1.35182 1.24544 1.20485 0.83268 0.80799 0.86309 1.90751 1.26371 1.63513 1.58931 1.19959 0.84492 0.82149 0.85810 1.90740 1.26718 1.64667 1.58837 1.46232 1.28347 1.33177 1.25946 1.21934 1.00775 0.95411 0.82176 1.19360 0.93526 0.92118 0.97682 1.21013 1.10985 1.17353 1.06857 0.92165 1.25000 0.94899 0.96857 0.97517 1.69955 1.15172 1.29039 1.38877 0.86496 0.78841 0.78729 0.83380 1.20558 1.21152 1.19728 1.20330 0.90912 0.98770 1.07081 0.90725 0.91221 0.91300 0.85995 0.85807 0.85513 0.90882 0.90078 0.91491 0.91399 0.91221 0.74653 0.75399 0.91858 0.91868 0.95659 0.95640 0.92782 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.01 36.00 0.36 -0.26 16 2 C -0.05 -0.36 5.88 -104.65 -0.62 -0.98 16 3 C -0.16 -1.15 9.70 -39.56 -0.38 -1.53 16 4 C -0.08 -0.55 10.04 -39.60 -0.40 -0.94 16 5 C -0.22 -1.68 9.04 -39.43 -0.36 -2.04 16 6 C 0.14 1.24 6.69 -39.21 -0.26 0.97 16 7 O -0.31 -2.80 8.99 -19.42 -0.17 -2.98 16 8 C 0.05 0.36 4.48 37.16 0.17 0.52 16 9 C 0.15 1.31 2.98 -67.93 -0.20 1.11 16 10 H 0.11 0.98 7.58 -51.93 -0.39 0.59 16 11 C -0.16 -1.45 9.29 37.16 0.35 -1.10 16 12 N -0.70 -8.13 5.05 -54.24 -0.27 -8.41 16 13 C 0.51 7.55 7.85 -11.59 -0.09 7.45 16 14 O -0.52 -8.48 16.14 5.50 0.09 -8.39 16 15 C 0.50 8.61 7.89 -11.59 -0.09 8.52 16 16 O -0.53 -10.23 16.48 5.50 0.09 -10.14 16 17 N -0.69 -12.55 5.55 -60.73 -0.34 -12.89 16 18 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 19 C 0.01 0.26 5.09 -27.89 -0.14 0.12 16 20 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 21 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 24 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 28 C -0.15 -1.34 9.64 -39.43 -0.38 -1.72 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 32 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 33 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.13 0.77 6.30 -52.49 -0.33 0.44 16 35 H 0.07 0.48 7.65 -51.93 -0.40 0.09 16 36 H 0.08 0.42 7.67 -51.93 -0.40 0.02 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.65 7.56 -51.93 -0.39 0.26 16 40 H 0.42 4.80 7.85 -40.82 -0.32 4.47 16 41 H 0.41 7.13 7.94 -40.82 -0.32 6.80 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 401.05 15.07 6.04 6.04 Total: -1.00 -32.11 401.05 -8.50 -40.61 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.17 Total: 5.80 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.48 Total: -0.57 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.13 Total: -46.66 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: 0.00 Total: -21.50 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.11 -8.50 -40.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321810508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.017 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds