Wall clock time and date at job start Tue Mar 31 2020 18:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38260 * 119.94803 * 2 1 4 4 C 1.38143 * 120.05881 * 179.97438 * 3 2 1 5 5 C 1.38729 * 119.94349 * 0.02562 * 4 3 2 6 6 O 1.35896 * 120.05725 * 179.97438 * 5 4 3 7 7 C 1.42901 * 117.00331 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47242 * 180.02562 * 7 6 5 9 9 O 1.21274 * 120.00072 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99816 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47282 * 179.97438 * 11 10 8 13 13 O 1.42901 * 110.64338 * 298.31527 * 12 11 10 14 14 C 1.55154 * 110.71880 * 174.97661 * 12 11 10 15 15 C 1.54910 * 101.58031 * 206.13651 * 14 12 11 16 16 N 1.47426 * 104.83209 * 37.01037 * 15 14 12 17 17 C 1.36937 * 125.64487 * 155.84912 * 16 15 14 18 18 H 1.08001 * 119.99600 * 180.02562 * 17 16 15 19 19 C 1.38807 * 120.00345 * 0.02772 * 17 16 15 20 20 N 1.31623 * 120.00215 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99940 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47445 * 59.99771 * 21 19 17 23 23 H 1.48507 * 109.46867 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46918 * 299.99556 * 21 19 17 25 25 C 1.47019 * 108.70209 * 335.87354 * 16 15 14 26 26 C 1.38734 * 119.88788 * 0.27841 * 5 4 3 27 27 C 1.38150 * 119.94429 * 359.46492 * 26 5 4 28 28 H 1.08997 * 109.47076 * 89.99941 * 1 2 3 29 29 H 1.08998 * 109.47151 * 209.99830 * 1 2 3 30 30 H 1.09003 * 109.47088 * 329.99960 * 1 2 3 31 31 H 1.08007 * 119.97062 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.02789 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47324 * 59.99773 * 7 6 5 34 34 H 1.09002 * 109.47076 * 300.00096 * 7 6 5 35 35 H 0.97006 * 120.00120 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.46837 * 59.99936 * 11 10 8 37 37 H 1.09000 * 109.47332 * 300.00307 * 11 10 8 38 38 H 0.96694 * 114.00195 * 61.68414 * 13 12 11 39 39 H 1.09002 * 111.00945 * 88.06458 * 14 12 11 40 40 H 1.08999 * 111.00353 * 324.20996 * 14 12 11 41 41 H 1.08998 * 110.36709 * 278.17139 * 15 14 12 42 42 H 1.09005 * 110.36466 * 155.84673 * 15 14 12 43 43 H 0.96993 * 120.00387 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.88389 * 120.48020 * 25 16 15 45 45 H 1.09004 * 109.87600 * 241.48978 * 25 16 15 46 46 H 1.08001 * 120.02777 * 179.72063 * 26 5 4 47 47 H 1.07992 * 119.97006 * 180.27545 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1980 0.0000 4 6 3.5787 1.2007 0.0005 5 6 4.2734 -0.0001 0.0005 6 8 5.6324 -0.0002 0.0005 7 6 6.2812 -1.2734 0.0000 8 6 7.7752 -1.0760 0.0007 9 8 8.2388 0.0447 0.0011 10 7 8.5962 -2.1449 -0.0002 11 6 10.0485 -1.9530 -0.0001 12 6 10.7431 -3.3163 -0.0006 13 8 10.4066 -4.0536 1.1764 14 6 12.2804 -3.1491 -0.1275 15 6 12.6870 -4.4953 -0.7772 16 7 11.5945 -4.8060 -1.7170 17 6 11.6974 -5.6051 -2.8242 18 1 10.8347 -5.7711 -3.4524 19 6 12.9104 -6.2020 -3.1392 20 7 13.9619 -5.9994 -2.3739 21 14 13.0508 -7.2915 -4.6500 22 1 12.7136 -6.5029 -5.8622 23 1 14.4402 -7.8034 -4.7637 24 1 12.1105 -8.4341 -4.5254 25 6 10.3764 -4.1153 -1.2689 26 6 3.5786 -1.2009 -0.0058 27 6 2.1971 -1.1982 -0.0010 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6559 2.1326 0.0004 32 1 4.1173 2.1368 0.0010 33 1 5.9883 -1.8301 -0.8902 34 1 5.9883 -1.8309 0.8897 35 1 8.2254 -3.0413 -0.0009 36 1 10.3414 -1.3968 0.8904 37 1 10.3415 -1.3953 -0.8896 38 1 9.4636 -4.2496 1.2615 39 1 12.7431 -3.0328 0.8526 40 1 12.5298 -2.3104 -0.7775 41 1 12.7676 -5.2736 -0.0184 42 1 13.6299 -4.3881 -1.3136 43 1 14.8096 -6.4161 -2.5941 44 1 10.0277 -3.4363 -2.0470 45 1 9.6001 -4.8450 -1.0386 46 1 4.1172 -2.1370 -0.0104 47 1 1.6558 -2.1326 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325162126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:39 Heat of formation + Delta-G solvation = -67.101876 kcal Electronic energy + Delta-G solvation = -27928.681765 eV Core-core repulsion = 23884.744186 eV Total energy + Delta-G solvation = -4043.937579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.72165 -39.81199 -38.60396 -37.69474 -35.21513 -34.28908 -32.44655 -32.15565 -31.40996 -30.09427 -29.20121 -27.79740 -26.44374 -25.59215 -23.70185 -23.03273 -21.64718 -20.94594 -20.11390 -19.97000 -18.66819 -17.92012 -17.00318 -16.69737 -16.30713 -16.17106 -15.70217 -15.34340 -15.05945 -14.77816 -14.60649 -14.25973 -14.12143 -13.95368 -13.83726 -13.81108 -13.30316 -13.07665 -12.95136 -12.61092 -12.43105 -12.23638 -12.14669 -11.88506 -11.63568 -11.21146 -11.20744 -11.08123 -10.90097 -10.81762 -10.42562 -10.21852 -10.17534 -9.87448 -9.76906 -9.47536 -9.35436 -9.22733 -8.69368 -8.38731 -6.91067 -5.70541 -3.13383 0.98987 1.07017 2.29333 2.38582 3.36906 3.39860 3.40678 3.41457 3.42719 4.27679 4.39699 4.41725 4.48089 4.50872 4.57388 4.66467 4.69965 4.81293 4.90842 4.99582 5.11692 5.18888 5.24944 5.33863 5.36667 5.44702 5.55109 5.57360 5.69325 5.80545 5.90648 5.93872 6.00317 6.16172 6.19733 6.26272 6.34156 6.41393 6.44186 6.53717 6.56619 7.01139 7.24367 7.51031 7.55747 7.79369 7.85975 7.98882 8.29749 9.15475 9.75922 10.39852 11.33025 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.001993 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.958063 B =14045.186707 C =14999.881869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.128 4.128 3 C -0.081 4.081 4 C -0.145 4.145 5 C 0.125 3.875 6 O -0.289 6.289 7 C 0.041 3.959 8 C 0.516 3.484 9 O -0.517 6.517 10 N -0.722 5.722 11 C 0.107 3.893 12 C 0.105 3.895 13 O -0.542 6.542 14 C -0.128 4.128 15 C 0.156 3.844 16 N -0.599 5.599 17 C -0.228 4.228 18 H 0.076 0.924 19 C -0.009 4.009 20 N -0.920 5.920 21 Si 0.916 3.084 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.285 1.285 25 C 0.116 3.884 26 C -0.207 4.207 27 C -0.080 4.080 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.400 0.600 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.364 0.636 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.019 0.981 42 H 0.109 0.891 43 H 0.254 0.746 44 H 0.031 0.969 45 H 0.023 0.977 46 H 0.129 0.871 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.347 10.457 7.206 26.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.128 4.128 3 C -0.099 4.099 4 C -0.163 4.163 5 C 0.080 3.920 6 O -0.201 6.201 7 C -0.038 4.038 8 C 0.300 3.700 9 O -0.391 6.391 10 N -0.376 5.376 11 C -0.017 4.017 12 C 0.064 3.936 13 O -0.346 6.346 14 C -0.167 4.167 15 C 0.031 3.969 16 N -0.326 5.326 17 C -0.356 4.356 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.747 3.253 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.212 1.212 25 C -0.011 4.011 26 C -0.225 4.225 27 C -0.098 4.098 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.234 0.766 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.210 0.790 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.037 0.963 42 H 0.126 0.874 43 H 0.065 0.935 44 H 0.048 0.952 45 H 0.040 0.960 46 H 0.147 0.853 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -22.031 11.359 7.186 25.807 hybrid contribution -0.814 -1.431 -0.865 1.859 sum -22.844 9.928 6.321 25.698 Atomic orbital electron populations 1.20722 0.91050 1.02645 1.02196 1.19857 0.96283 0.93078 1.03591 1.20860 0.92874 0.97862 0.98270 1.20461 0.93733 0.96482 1.05637 1.19069 0.81942 0.94419 0.96597 1.86160 1.16232 1.29221 1.88521 1.22487 0.91281 0.86011 1.04013 1.19946 0.87611 0.85245 0.77195 1.90761 1.77223 1.23530 1.47601 1.45813 1.07311 1.08725 1.75798 1.22136 0.77775 0.98400 1.03370 1.22575 0.97411 0.88143 0.85506 1.86639 1.28722 1.76345 1.42944 1.23057 0.90301 1.02147 1.01173 1.21954 0.94669 0.89118 0.91159 1.44402 1.04702 1.55682 1.27767 1.18998 0.95795 1.20756 1.00034 0.90584 1.24806 0.95809 1.00684 0.99192 1.69775 1.00766 1.47562 1.38671 0.86132 0.76835 0.80184 0.82189 1.21118 1.21484 1.21201 1.21930 0.91659 0.94258 0.93239 1.21279 0.95529 0.96990 1.08742 1.20836 0.93224 0.97781 0.97930 0.91390 0.91697 0.91668 0.85327 0.84938 0.88735 0.88851 0.76592 0.90484 0.90038 0.79027 0.90990 0.90501 0.96332 0.87369 0.93540 0.95171 0.95967 0.85292 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.01 36.01 0.36 -0.20 16 2 C -0.13 -0.97 5.88 -104.60 -0.62 -1.59 16 3 C -0.08 -0.64 9.69 -39.61 -0.38 -1.03 16 4 C -0.14 -1.40 9.99 -39.43 -0.39 -1.79 16 5 C 0.13 1.32 6.69 -39.22 -0.26 1.06 16 6 O -0.29 -3.53 9.67 -39.32 -0.38 -3.91 16 7 C 0.04 0.38 5.22 36.01 0.19 0.57 16 8 C 0.52 6.54 7.91 -10.98 -0.09 6.45 16 9 O -0.52 -8.96 16.50 -14.35 -0.24 -9.20 16 10 N -0.72 -8.14 5.17 -60.30 -0.31 -8.45 16 11 C 0.11 1.49 4.73 -4.04 -0.02 1.48 16 12 C 0.11 1.72 0.92 -88.79 -0.08 1.64 16 13 O -0.54 -8.52 13.10 -35.23 -0.46 -8.98 16 14 C -0.13 -2.39 6.26 -24.58 -0.15 -2.54 16 15 C 0.16 3.75 5.88 -2.53 -0.01 3.73 16 16 N -0.60 -14.96 3.39 -170.07 -0.58 -15.53 16 17 C -0.23 -6.22 10.27 -15.06 -0.15 -6.38 16 18 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -26.48 10.09 55.49 0.56 -25.92 16 21 Si 0.92 21.75 29.55 -169.99 -5.02 16.73 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.12 2.23 6.02 -3.07 -0.02 2.22 16 26 C -0.21 -1.77 9.04 -39.43 -0.36 -2.13 16 27 C -0.08 -0.62 9.69 -39.60 -0.38 -1.00 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.28 8.08 -51.93 -0.42 -0.13 16 30 H 0.06 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.09 0.67 7.65 -51.93 -0.40 0.28 16 34 H 0.09 0.61 7.67 -51.93 -0.40 0.21 16 35 H 0.40 3.39 7.38 -40.82 -0.30 3.08 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 1.24 8.13 -51.93 -0.42 0.81 16 38 H 0.36 4.05 8.12 45.56 0.37 4.42 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.36 8.04 -51.93 -0.42 0.95 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.11 2.91 5.87 -51.93 -0.30 2.61 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.03 0.58 7.82 -51.93 -0.41 0.17 16 45 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 46 H 0.13 0.83 6.30 -52.49 -0.33 0.50 16 47 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -34.97 386.59 -9.45 -44.42 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.37 Total: 4.89 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -2.47 Total: 0.14 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.33 Total: -49.91 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -1.08 Total: -22.09 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.97 -9.45 -44.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325162126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.678 kcal (2) G-P(sol) polarization free energy of solvation -34.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds