Wall clock time and date at job start Tue Mar 31 2020 18:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38260 * 119.94803 * 2 1 4 4 C 1.38143 * 120.05881 * 179.97438 * 3 2 1 5 5 C 1.38729 * 119.94349 * 0.02562 * 4 3 2 6 6 O 1.35896 * 120.05725 * 179.97438 * 5 4 3 7 7 C 1.42901 * 117.00331 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47242 * 180.02562 * 7 6 5 9 9 O 1.21274 * 120.00072 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99816 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47282 * 179.97438 * 11 10 8 13 13 O 1.42901 * 110.64338 * 298.31527 * 12 11 10 14 14 C 1.55154 * 110.71880 * 174.97661 * 12 11 10 15 15 C 1.54910 * 101.58031 * 206.13651 * 14 12 11 16 16 N 1.47426 * 104.83209 * 37.01037 * 15 14 12 17 17 C 1.36937 * 125.64487 * 155.84912 * 16 15 14 18 18 H 1.08001 * 119.99600 * 180.02562 * 17 16 15 19 19 C 1.38807 * 120.00345 * 0.02772 * 17 16 15 20 20 N 1.31623 * 120.00215 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99940 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47445 * 59.99771 * 21 19 17 23 23 H 1.48507 * 109.46867 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46918 * 299.99556 * 21 19 17 25 25 C 1.47019 * 108.70209 * 335.87354 * 16 15 14 26 26 C 1.38734 * 119.88788 * 0.27841 * 5 4 3 27 27 C 1.38150 * 119.94429 * 359.46492 * 26 5 4 28 28 H 1.08997 * 109.47076 * 89.99941 * 1 2 3 29 29 H 1.08998 * 109.47151 * 209.99830 * 1 2 3 30 30 H 1.09003 * 109.47088 * 329.99960 * 1 2 3 31 31 H 1.08007 * 119.97062 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.02789 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47324 * 59.99773 * 7 6 5 34 34 H 1.09002 * 109.47076 * 300.00096 * 7 6 5 35 35 H 0.97006 * 120.00120 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.46837 * 59.99936 * 11 10 8 37 37 H 1.09000 * 109.47332 * 300.00307 * 11 10 8 38 38 H 0.96694 * 114.00195 * 61.68414 * 13 12 11 39 39 H 1.09002 * 111.00945 * 88.06458 * 14 12 11 40 40 H 1.08999 * 111.00353 * 324.20996 * 14 12 11 41 41 H 1.08998 * 110.36709 * 278.17139 * 15 14 12 42 42 H 1.09005 * 110.36466 * 155.84673 * 15 14 12 43 43 H 0.96993 * 120.00387 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.88389 * 120.48020 * 25 16 15 45 45 H 1.09004 * 109.87600 * 241.48978 * 25 16 15 46 46 H 1.08001 * 120.02777 * 179.72063 * 26 5 4 47 47 H 1.07992 * 119.97006 * 180.27545 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1980 0.0000 4 6 3.5787 1.2007 0.0005 5 6 4.2734 -0.0001 0.0005 6 8 5.6324 -0.0002 0.0005 7 6 6.2812 -1.2734 0.0000 8 6 7.7752 -1.0760 0.0007 9 8 8.2388 0.0447 0.0011 10 7 8.5962 -2.1449 -0.0002 11 6 10.0485 -1.9530 -0.0001 12 6 10.7431 -3.3163 -0.0006 13 8 10.4066 -4.0536 1.1764 14 6 12.2804 -3.1491 -0.1275 15 6 12.6870 -4.4953 -0.7772 16 7 11.5945 -4.8060 -1.7170 17 6 11.6974 -5.6051 -2.8242 18 1 10.8347 -5.7711 -3.4524 19 6 12.9104 -6.2020 -3.1392 20 7 13.9619 -5.9994 -2.3739 21 14 13.0508 -7.2915 -4.6500 22 1 12.7136 -6.5029 -5.8622 23 1 14.4402 -7.8034 -4.7637 24 1 12.1105 -8.4341 -4.5254 25 6 10.3764 -4.1153 -1.2689 26 6 3.5786 -1.2009 -0.0058 27 6 2.1971 -1.1982 -0.0010 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6559 2.1326 0.0004 32 1 4.1173 2.1368 0.0010 33 1 5.9883 -1.8301 -0.8902 34 1 5.9883 -1.8309 0.8897 35 1 8.2254 -3.0413 -0.0009 36 1 10.3414 -1.3968 0.8904 37 1 10.3415 -1.3953 -0.8896 38 1 9.4636 -4.2496 1.2615 39 1 12.7431 -3.0328 0.8526 40 1 12.5298 -2.3104 -0.7775 41 1 12.7676 -5.2736 -0.0184 42 1 13.6299 -4.3881 -1.3136 43 1 14.8096 -6.4161 -2.5941 44 1 10.0277 -3.4363 -2.0470 45 1 9.6001 -4.8450 -1.0386 46 1 4.1172 -2.1370 -0.0104 47 1 1.6558 -2.1326 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325162126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:38 Heat of formation + Delta-G solvation = -91.843040 kcal Electronic energy + Delta-G solvation = -27929.754622 eV Core-core repulsion = 23884.744186 eV Total energy + Delta-G solvation = -4045.010436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.53876 -40.81456 -39.85157 -38.46042 -36.82839 -35.42546 -34.00717 -32.99950 -32.00775 -31.54035 -30.53997 -29.03603 -27.42981 -26.86255 -25.18256 -23.77204 -22.52733 -22.12727 -21.49735 -21.34573 -19.37575 -19.01431 -18.82080 -17.58353 -17.39728 -17.14486 -16.74819 -16.42003 -16.16488 -16.10839 -15.68833 -15.51034 -15.18228 -15.01790 -14.83686 -14.45810 -14.43065 -14.39882 -13.92990 -13.75159 -13.73247 -13.30288 -13.05991 -12.92968 -12.86266 -12.73409 -12.40661 -12.37401 -12.10297 -12.05048 -11.84370 -11.82849 -11.74806 -11.61879 -11.07552 -10.88855 -10.73377 -10.29081 -9.95377 -9.01839 -8.90810 -7.77731 -5.22819 0.39381 0.44597 1.41958 1.46458 1.47122 1.50066 1.56468 2.48638 2.60236 2.79399 3.14405 3.31562 3.39588 3.53713 3.70471 3.87910 3.90922 3.94665 3.95439 4.03972 4.08694 4.12325 4.38904 4.46883 4.47324 4.59665 4.63047 4.66915 4.78997 4.85072 4.90613 4.93322 4.98317 5.07327 5.11917 5.17616 5.21412 5.37229 5.40183 5.45943 5.60886 5.70463 5.79369 5.84671 6.27049 6.29150 6.44014 6.79924 7.05609 7.08908 7.76396 8.39823 9.23967 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.001993 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.958063 B =14045.186707 C =14999.881869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.133 4.133 3 C -0.086 4.086 4 C -0.166 4.166 5 C 0.101 3.899 6 O -0.321 6.321 7 C 0.043 3.957 8 C 0.516 3.484 9 O -0.570 6.570 10 N -0.708 5.708 11 C 0.120 3.880 12 C 0.127 3.873 13 O -0.553 6.553 14 C -0.121 4.121 15 C 0.159 3.841 16 N -0.623 5.623 17 C -0.240 4.240 18 H 0.084 0.916 19 C -0.069 4.069 20 N -0.949 5.949 21 Si 0.981 3.019 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.277 1.277 25 C 0.112 3.888 26 C -0.208 4.208 27 C -0.086 4.086 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.147 0.853 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.416 0.584 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.386 0.614 39 H 0.085 0.915 40 H 0.085 0.915 41 H -0.014 1.014 42 H 0.074 0.926 43 H 0.247 0.753 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.151 0.849 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.420 9.889 7.312 29.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.133 4.133 3 C -0.104 4.104 4 C -0.185 4.185 5 C 0.056 3.944 6 O -0.235 6.235 7 C -0.035 4.035 8 C 0.302 3.698 9 O -0.448 6.448 10 N -0.363 5.363 11 C -0.004 4.004 12 C 0.085 3.915 13 O -0.360 6.360 14 C -0.160 4.160 15 C 0.034 3.966 16 N -0.349 5.349 17 C -0.369 4.369 18 H 0.102 0.898 19 C -0.261 4.261 20 N -0.598 5.598 21 Si 0.810 3.190 22 H -0.203 1.203 23 H -0.222 1.222 24 H -0.203 1.203 25 C -0.014 4.014 26 C -0.227 4.227 27 C -0.104 4.104 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.164 0.836 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.254 0.746 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.236 0.764 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.004 0.996 42 H 0.092 0.908 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.169 0.831 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -25.176 10.765 7.304 28.339 hybrid contribution 0.050 -1.259 -0.862 1.526 sum -25.126 9.507 6.442 27.626 Atomic orbital electron populations 1.20770 0.89260 1.03598 1.02882 1.20239 0.97707 0.92916 1.02417 1.21118 0.92299 0.99126 0.97861 1.20648 0.94697 0.96438 1.06707 1.19287 0.81415 0.95450 0.98235 1.86100 1.17330 1.30866 1.89178 1.22623 0.88379 0.85681 1.06795 1.20561 0.89128 0.84398 0.75683 1.90743 1.78340 1.25616 1.50117 1.45610 1.06080 1.09550 1.75056 1.21789 0.79224 0.96361 1.03039 1.22174 0.95817 0.88854 0.84615 1.86606 1.31038 1.76317 1.42081 1.22905 0.92472 0.99149 1.01499 1.21656 0.93765 0.90995 0.90154 1.44687 1.06899 1.55866 1.27459 1.19419 0.96016 1.20649 1.00815 0.89812 1.25670 0.95730 1.02569 1.02161 1.70041 1.00915 1.48595 1.40257 0.85109 0.76346 0.78569 0.79023 1.20253 1.22156 1.20329 1.22155 0.90032 0.94569 0.94624 1.21544 0.96051 0.97076 1.08022 1.21197 0.93161 0.98833 0.97243 0.90728 0.90674 0.90871 0.83550 0.85611 0.86110 0.85530 0.74606 0.90288 0.91091 0.76434 0.89605 0.89633 0.99616 0.90787 0.94330 0.94508 0.94206 0.83107 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 71.24 0.71 -0.12 16 2 C -0.13 -1.74 5.88 -19.85 -0.12 -1.85 16 3 C -0.09 -1.28 9.69 22.25 0.22 -1.06 16 4 C -0.17 -3.21 9.99 22.36 0.22 -2.99 16 5 C 0.10 2.03 6.69 22.51 0.15 2.18 16 6 O -0.32 -7.62 9.67 -73.34 -0.71 -8.33 16 7 C 0.04 0.70 5.22 71.24 0.37 1.07 16 8 C 0.52 12.19 7.91 87.66 0.69 12.88 16 9 O -0.57 -19.62 16.50 16.02 0.26 -19.36 16 10 N -0.71 -14.12 5.17 -463.07 -2.40 -16.51 16 11 C 0.12 3.14 4.73 86.38 0.41 3.55 16 12 C 0.13 3.93 0.92 -9.61 -0.01 3.92 16 13 O -0.55 -16.00 13.10 -148.98 -1.95 -17.95 16 14 C -0.12 -4.48 6.26 31.99 0.20 -4.28 16 15 C 0.16 7.87 5.88 86.86 0.51 8.39 16 16 N -0.62 -31.12 3.39 -691.99 -2.35 -33.47 16 17 C -0.24 -13.14 10.27 84.03 0.86 -12.28 16 18 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 19 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 20 N -0.95 -56.36 10.09 21.65 0.22 -56.14 16 21 Si 0.98 45.03 29.55 68.60 2.03 47.06 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 25 C 0.11 4.12 6.02 86.73 0.52 4.64 16 26 C -0.21 -3.08 9.04 22.37 0.20 -2.87 16 27 C -0.09 -1.11 9.69 22.26 0.22 -0.89 16 28 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.43 8.08 -2.39 -0.02 0.41 16 30 H 0.07 0.45 8.08 -2.39 -0.02 0.43 16 31 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.12 1.30 7.65 -2.39 -0.02 1.29 16 34 H 0.13 1.18 7.67 -2.39 -0.02 1.16 16 35 H 0.42 5.52 7.38 -92.70 -0.68 4.84 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.07 2.06 8.13 -2.39 -0.02 2.04 16 38 H 0.39 7.24 8.12 -74.06 -0.60 6.63 16 39 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.09 3.00 8.04 -2.39 -0.02 2.98 16 41 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 42 H 0.07 4.17 5.87 -2.38 -0.01 4.15 16 43 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 44 H 0.04 1.33 7.82 -2.39 -0.02 1.31 16 45 H 0.04 1.35 8.06 -2.38 -0.02 1.33 16 46 H 0.15 1.39 6.30 -2.91 -0.02 1.38 16 47 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -78.84 386.59 0.44 -78.40 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -0.29 Total: 19.41 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 5.63 Total: 6.89 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -4.53 Total: -106.12 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -2.40 Total: -45.63 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -78.84 0.44 -78.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325162126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.446 kcal (2) G-P(sol) polarization free energy of solvation -78.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds