Wall clock time and date at job start Tue Mar 31 2020 18:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38266 * 119.94665 * 2 1 4 4 C 1.38140 * 120.06209 * 179.97438 * 3 2 1 5 5 C 1.38729 * 119.94234 * 0.25167 * 4 3 2 6 6 O 1.35904 * 120.05727 * 179.74517 * 5 4 3 7 7 C 1.42901 * 116.99664 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46588 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00499 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99559 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99686 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47090 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.50946 * 60.10034 * 12 11 10 14 14 C 1.53293 * 109.51336 * 180.25243 * 12 11 10 15 15 N 1.47146 * 108.38490 * 172.22485 * 14 12 11 16 16 C 1.36942 * 120.98478 * 129.44464 * 15 14 12 17 17 H 1.07996 * 120.00033 * 206.25052 * 16 15 14 18 18 C 1.38815 * 119.99606 * 26.24768 * 16 15 14 19 19 N 1.31621 * 120.00056 * 16.90648 * 18 16 15 20 20 Si 1.86794 * 119.99854 * 196.90318 * 18 16 15 21 21 H 1.48505 * 109.47166 * 90.00340 * 20 18 16 22 22 H 1.48500 * 109.47035 * 210.00094 * 20 18 16 23 23 H 1.48501 * 109.47613 * 330.00438 * 20 18 16 24 24 C 1.47156 * 118.03759 * 309.46344 * 15 14 12 25 25 C 1.53296 * 108.38207 * 50.53366 * 24 15 14 26 26 O 1.42958 * 109.22618 * 307.70084 * 25 24 15 27 27 C 1.38736 * 119.88584 * 359.52166 * 5 4 3 28 28 C 1.38143 * 119.94538 * 0.45850 * 27 5 4 29 29 H 1.08999 * 109.47439 * 89.99726 * 1 2 3 30 30 H 1.09004 * 109.46884 * 209.99966 * 1 2 3 31 31 H 1.08999 * 109.47341 * 329.99722 * 1 2 3 32 32 H 1.08006 * 119.96846 * 359.95611 * 3 2 1 33 33 H 1.07999 * 120.03189 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.47849 * 300.00013 * 7 6 5 35 35 H 1.08999 * 109.47395 * 60.00720 * 7 6 5 36 36 H 0.96994 * 120.00573 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.46639 * 300.00237 * 11 10 8 38 38 H 1.08999 * 109.46934 * 59.99920 * 11 10 8 39 39 H 1.08997 * 109.68294 * 291.95372 * 14 12 11 40 40 H 1.09006 * 109.67744 * 52.50307 * 14 12 11 41 41 H 0.96999 * 120.00040 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.68290 * 290.81590 * 24 15 14 43 43 H 1.08998 * 109.71244 * 170.27437 * 24 15 14 44 44 H 1.08995 * 109.51191 * 187.76925 * 25 24 15 45 45 H 1.09011 * 109.51097 * 67.62365 * 25 24 15 46 46 H 1.08004 * 120.02458 * 180.20928 * 27 5 4 47 47 H 1.07997 * 119.97377 * 179.77681 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2734 0.0001 -0.0042 6 8 5.6324 0.0002 -0.0089 7 6 6.2811 -1.2731 -0.0131 8 6 7.7752 -1.0756 -0.0173 9 8 8.2388 0.0451 -0.0164 10 7 8.5962 -2.1445 -0.0222 11 6 10.0486 -1.9525 -0.0258 12 6 10.7432 -3.3157 -0.0316 13 1 10.4497 -3.8700 -0.9230 14 6 12.2631 -3.1159 -0.0290 15 7 12.9033 -4.4281 0.1542 16 6 13.8984 -4.8505 -0.6863 17 1 14.0679 -5.9067 -0.8347 18 6 14.6893 -3.9210 -1.3477 19 7 14.7215 -2.6717 -0.9348 20 14 15.7081 -4.4433 -2.8237 21 1 14.9073 -4.2739 -4.0629 22 1 16.9293 -3.6024 -2.9048 23 1 16.0975 -5.8688 -2.6771 24 6 12.4424 -5.2733 1.2672 25 6 10.9137 -5.3679 1.2015 26 8 10.3630 -4.0503 1.1344 27 6 3.5786 -1.2007 0.0006 28 6 2.1972 -1.1981 0.0004 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5139 32 1 1.6557 2.1326 -0.0007 33 1 4.1172 2.1369 0.0001 34 1 5.9914 -1.8315 0.8770 35 1 5.9853 -1.8288 -0.9029 36 1 8.2255 -3.0408 -0.0233 37 1 10.3389 -1.3933 -0.9152 38 1 10.3439 -1.3976 0.8647 39 1 12.5781 -2.6831 -0.9784 40 1 12.5447 -2.4526 0.7889 41 1 15.2744 -2.0222 -1.3967 42 1 12.7420 -4.8271 2.2155 43 1 12.8760 -6.2691 1.1767 44 1 10.5416 -5.8732 2.0926 45 1 10.6216 -5.9302 0.3144 46 1 4.1173 -2.1368 0.0003 47 1 1.6558 -2.1326 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495885164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:06 Heat of formation + Delta-G solvation = -90.521862 kcal Electronic energy + Delta-G solvation = -27785.597194 eV Core-core repulsion = 23740.644048 eV Total energy + Delta-G solvation = -4044.953146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.47209 -40.64010 -39.92714 -38.47965 -36.48097 -35.87856 -33.28674 -33.05784 -32.61984 -31.97247 -30.06414 -28.90887 -27.27194 -26.57698 -25.06190 -23.89189 -23.24938 -22.25704 -21.78384 -21.19057 -19.36005 -18.95929 -18.36019 -17.64995 -17.34550 -17.13752 -16.89372 -16.50920 -16.17895 -16.09497 -15.65721 -15.52955 -15.23963 -15.18453 -15.02998 -14.61139 -14.47329 -14.43936 -14.39805 -13.81796 -13.73674 -13.20990 -13.02761 -13.00283 -12.85395 -12.69105 -12.53545 -12.40175 -12.18224 -12.09579 -11.89138 -11.82310 -11.78252 -11.32942 -11.05184 -10.79045 -10.56347 -10.23354 -9.95052 -9.01388 -8.76781 -7.92450 -5.40101 0.39768 0.45003 1.44485 1.45701 1.47296 1.50482 1.56397 2.45534 2.62481 2.78590 2.79806 3.22313 3.47577 3.56057 3.88548 3.95414 4.02274 4.04165 4.05214 4.10302 4.12761 4.26325 4.39460 4.45174 4.47886 4.51174 4.59066 4.64051 4.67797 4.81438 4.85566 4.91509 4.96710 5.06947 5.12451 5.18425 5.22586 5.26742 5.37997 5.40552 5.52095 5.59323 5.70671 5.85860 6.25183 6.31392 6.33371 6.49577 7.04316 7.11565 7.73509 8.26777 9.13284 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.001865 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.894081 B =15010.503258 C =15531.233257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.132 4.132 3 C -0.086 4.086 4 C -0.167 4.167 5 C 0.100 3.900 6 O -0.323 6.323 7 C 0.048 3.952 8 C 0.510 3.490 9 O -0.576 6.576 10 N -0.700 5.700 11 C 0.144 3.856 12 C 0.078 3.922 13 H 0.069 0.931 14 C 0.157 3.843 15 N -0.613 5.613 16 C -0.266 4.266 17 H 0.075 0.925 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.283 1.283 22 H -0.298 1.298 23 H -0.266 1.266 24 C 0.100 3.900 25 C 0.058 3.942 26 O -0.389 6.389 27 C -0.208 4.208 28 C -0.085 4.085 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.147 0.853 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.420 0.580 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.067 0.933 40 H -0.001 1.001 41 H 0.251 0.749 42 H 0.014 0.986 43 H 0.073 0.927 44 H 0.122 0.878 45 H 0.057 0.943 46 H 0.151 0.849 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.128 -1.559 1.748 29.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 C -0.104 4.104 4 C -0.186 4.186 5 C 0.055 3.945 6 O -0.236 6.236 7 C -0.030 4.030 8 C 0.296 3.704 9 O -0.455 6.455 10 N -0.353 5.353 11 C 0.019 3.981 12 C 0.018 3.982 13 H 0.087 0.913 14 C 0.030 3.970 15 N -0.338 5.338 16 C -0.396 4.396 17 H 0.093 0.907 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.798 3.202 21 H -0.210 1.210 22 H -0.225 1.225 23 H -0.190 1.190 24 C -0.025 4.025 25 C -0.020 4.020 26 O -0.308 6.308 27 C -0.227 4.227 28 C -0.103 4.103 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.164 0.836 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.258 0.742 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.017 0.983 41 H 0.060 0.940 42 H 0.032 0.968 43 H 0.091 0.909 44 H 0.140 0.860 45 H 0.075 0.925 46 H 0.169 0.831 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -28.662 -0.439 1.842 28.725 hybrid contribution 1.547 -0.329 -0.760 1.755 sum -27.115 -0.768 1.082 27.147 Atomic orbital electron populations 1.20768 0.89162 1.03608 1.02918 1.20242 0.97743 0.92866 1.02393 1.21116 0.92202 0.99194 0.97872 1.20649 0.94768 0.96393 1.06793 1.19322 0.81374 0.95559 0.98249 1.86111 1.17442 1.30921 1.89164 1.22576 0.88075 0.85580 1.06753 1.20692 0.89355 0.84429 0.75909 1.90742 1.78449 1.25781 1.50554 1.45559 1.05771 1.09653 1.74354 1.21117 0.79273 0.95523 1.02159 1.22738 0.95132 0.91583 0.88725 0.91279 1.21101 0.88766 0.87076 1.00016 1.44339 1.40844 1.17203 1.31402 1.19575 1.08579 0.92363 1.19041 0.90695 1.25849 0.99267 0.96319 1.03213 1.70184 1.42962 1.03864 1.41189 0.85220 0.77528 0.77836 0.79586 1.20984 1.22458 1.19033 1.21851 0.95275 0.95571 0.89837 1.23087 0.92713 0.83281 1.02891 1.87788 1.71581 1.28206 1.43219 1.21544 0.96100 0.96997 1.08017 1.21198 0.93053 0.98876 0.97179 0.90650 0.90606 0.90924 0.83550 0.85779 0.85864 0.85715 0.74204 0.90623 0.92380 0.91498 0.98320 0.93975 0.96798 0.90906 0.86004 0.92495 0.83100 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 71.23 0.71 -0.14 16 2 C -0.13 -1.80 5.88 -19.85 -0.12 -1.91 16 3 C -0.09 -1.35 9.69 22.25 0.22 -1.14 16 4 C -0.17 -3.47 9.99 22.36 0.22 -3.25 16 5 C 0.10 2.17 6.69 22.51 0.15 2.32 16 6 O -0.32 -8.45 9.67 -73.43 -0.71 -9.16 16 7 C 0.05 0.91 5.22 71.24 0.37 1.28 16 8 C 0.51 14.34 7.91 87.66 0.69 15.03 16 9 O -0.58 -22.74 16.50 16.01 0.26 -22.47 16 10 N -0.70 -17.77 5.45 -463.05 -2.52 -20.29 16 11 C 0.14 4.78 5.37 86.38 0.46 5.24 16 12 C 0.08 2.77 2.87 30.69 0.09 2.86 16 13 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 14 C 0.16 7.47 4.73 86.35 0.41 7.88 16 15 N -0.61 -30.07 3.05 -697.54 -2.13 -32.20 16 16 C -0.27 -14.20 9.65 84.03 0.81 -13.39 16 17 H 0.08 3.83 7.88 -2.91 -0.02 3.81 16 18 C -0.05 -2.80 4.95 84.86 0.42 -2.38 16 19 N -0.94 -55.14 11.14 21.65 0.24 -54.90 16 20 Si 0.97 43.99 29.59 68.60 2.03 46.02 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 24 C 0.10 3.92 6.73 86.35 0.58 4.50 16 25 C 0.06 1.73 6.98 72.08 0.50 2.23 16 26 O -0.39 -12.85 10.13 -148.98 -1.51 -14.36 16 27 C -0.21 -3.27 9.04 22.37 0.20 -3.07 16 28 C -0.09 -1.13 9.69 22.25 0.22 -0.91 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.44 8.08 -2.38 -0.02 0.42 16 31 H 0.07 0.47 8.08 -2.39 -0.02 0.45 16 32 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.12 2.61 8.06 -2.91 -0.02 2.58 16 34 H 0.12 1.58 7.65 -2.39 -0.02 1.56 16 35 H 0.13 1.53 7.67 -2.39 -0.02 1.51 16 36 H 0.42 7.77 8.35 -92.71 -0.77 6.99 16 37 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.07 3.57 6.14 -2.39 -0.01 3.55 16 40 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 41 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.07 2.66 7.96 -2.39 -0.02 2.64 16 44 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 45 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 46 H 0.15 1.54 6.30 -2.91 -0.02 1.52 16 47 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -75.82 387.99 1.81 -74.01 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.20 Total: 18.18 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 5.94 Total: 15.17 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -4.41 Total: -107.39 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -1.95 Total: -45.99 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -75.82 1.81 -74.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495885164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.509 kcal (2) G-P(sol) polarization free energy of solvation -75.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds