Wall clock time and date at job start Tue Mar 31 2020 18:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38275 * 119.96990 * 2 1 4 4 C 1.38256 * 120.11032 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.97398 * 179.97438 * 4 3 2 6 6 C 1.38149 * 120.05990 * 359.97438 * 4 3 2 7 7 C 1.38732 * 119.93758 * 0.02562 * 6 4 3 8 8 O 1.35904 * 120.05264 * 180.02562 * 7 6 4 9 9 C 1.42898 * 117.00166 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47215 * 180.02562 * 9 8 7 11 11 O 1.21278 * 120.00413 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99819 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99936 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47091 * 179.97438 * 13 12 10 15 15 O 1.42902 * 113.40920 * 51.80617 * 14 13 12 16 16 C 1.53495 * 114.20668 * 185.00210 * 14 13 12 17 17 N 1.47066 * 87.98548 * 87.52134 * 16 14 13 18 18 C 1.36933 * 136.05515 * 207.08569 * 17 16 14 19 19 H 1.07994 * 120.00522 * 6.49943 * 18 17 16 20 20 C 1.38813 * 119.99615 * 186.49718 * 18 17 16 21 21 N 1.31621 * 119.99986 * 6.13435 * 20 18 17 22 22 Si 1.86800 * 119.99906 * 186.40574 * 20 18 17 23 23 H 1.48501 * 109.47119 * 264.74574 * 22 20 18 24 24 H 1.48504 * 109.47233 * 24.74441 * 22 20 18 25 25 H 1.48503 * 109.47248 * 144.74737 * 22 20 18 26 26 C 1.47066 * 87.88243 * 27.34326 * 17 16 14 27 27 C 1.38136 * 119.97350 * 180.22689 * 2 1 3 28 28 H 1.09006 * 109.46876 * 90.00426 * 1 2 3 29 29 H 1.08997 * 109.47447 * 210.00118 * 1 2 3 30 30 H 1.09001 * 109.47489 * 330.00414 * 1 2 3 31 31 H 1.08004 * 119.94360 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47326 * 269.98060 * 5 4 3 33 33 H 1.09004 * 109.47163 * 29.97622 * 5 4 3 34 34 H 1.09006 * 109.47689 * 149.97754 * 5 4 3 35 35 H 1.08000 * 120.03095 * 179.97438 * 6 4 3 36 36 H 1.09004 * 109.46977 * 60.00221 * 9 8 7 37 37 H 1.08999 * 109.47495 * 300.00557 * 9 8 7 38 38 H 0.97000 * 120.00266 * 0.02562 * 12 10 9 39 39 H 1.09000 * 109.46432 * 60.00268 * 13 12 10 40 40 H 1.08993 * 109.47000 * 300.00295 * 13 12 10 41 41 H 0.96706 * 113.99898 * 313.19158 * 15 14 13 42 42 H 1.09003 * 113.46642 * 332.73859 * 16 14 13 43 43 H 1.08991 * 113.52338 * 202.31517 * 16 14 13 44 44 H 0.97003 * 119.99710 * 180.27719 * 21 20 18 45 45 H 1.08993 * 113.46844 * 87.44082 * 26 17 16 46 46 H 1.09005 * 113.46768 * 217.87931 * 26 17 16 47 47 H 1.08000 * 120.03094 * 0.02750 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2012 0.0005 5 6 4.3300 2.5085 -0.0001 6 6 4.2752 0.0073 0.0016 7 6 3.5845 -1.1958 0.0016 8 8 4.2657 -2.3718 0.0032 9 6 3.4893 -3.5714 0.0037 10 6 4.4091 -4.7652 0.0061 11 8 5.6112 -4.6045 0.0077 12 7 3.8958 -6.0114 0.0064 13 6 4.7899 -7.1719 0.0081 14 6 3.9585 -8.4563 0.0088 15 8 2.9700 -8.4933 -1.0226 16 6 4.7872 -9.7424 0.1327 17 7 4.7040 -9.5935 1.5934 18 6 5.4674 -9.9659 2.6675 19 1 6.4351 -10.4192 2.5110 20 6 4.9976 -9.7606 3.9574 21 7 3.7719 -9.3209 4.1492 22 14 6.1073 -10.1012 5.4209 23 1 5.8480 -11.4718 5.9304 24 1 7.5276 -9.9894 5.0018 25 1 5.8286 -9.1133 6.4941 26 6 3.4368 -8.8745 1.3933 27 6 2.1971 -1.1966 -0.0047 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6563 2.1324 -0.0004 32 1 4.5115 2.8229 -1.0279 33 1 3.7383 3.2669 0.5127 34 1 5.2825 2.3815 0.5146 35 1 5.3552 0.0105 0.0016 36 1 2.8612 -3.5980 -0.8869 37 1 2.8597 -3.5965 0.8931 38 1 2.9343 -6.1399 0.0047 39 1 5.4176 -7.1454 0.8989 40 1 5.4196 -7.1467 -0.8811 41 1 2.4497 -7.6816 -1.0980 42 1 5.8006 -9.6449 -0.2566 43 1 4.2749 -10.6279 -0.2433 44 1 3.4449 -9.1737 5.0505 45 1 2.5676 -9.5307 1.3496 46 1 3.2998 -8.0375 2.0781 47 1 1.6572 -2.1319 -0.0089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569789022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:30 Heat of formation + Delta-G solvation = -64.891835 kcal Electronic energy + Delta-G solvation = -28033.802356 eV Core-core repulsion = 23989.960612 eV Total energy + Delta-G solvation = -4043.841744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.61955 -41.04667 -40.12805 -38.61037 -36.72883 -35.40761 -34.45633 -34.10494 -32.19638 -30.66372 -29.43224 -28.08919 -27.86306 -27.04791 -26.54402 -24.24811 -22.84269 -22.19722 -21.42033 -20.70243 -19.14391 -18.82066 -18.66361 -17.62647 -17.45683 -17.27194 -16.94255 -16.82384 -16.24843 -16.07504 -15.80471 -15.44391 -15.04063 -14.75301 -14.67600 -14.57026 -14.31728 -14.09198 -13.96866 -13.75262 -13.68979 -13.44308 -13.30456 -12.96097 -12.91444 -12.83733 -12.76987 -12.66121 -12.35126 -12.22420 -12.01432 -11.84666 -11.68371 -11.53230 -11.10877 -10.89040 -10.70251 -10.28105 -9.58445 -9.15129 -9.02685 -7.99496 -5.32085 0.34124 0.45918 1.37896 1.43573 1.45102 1.45603 1.54330 2.40023 2.55439 2.74162 3.05357 3.23456 3.35024 3.47951 3.53015 3.80649 3.81379 3.88772 3.97040 4.06328 4.16050 4.31604 4.35057 4.40428 4.48627 4.65419 4.68456 4.78431 4.81981 4.83119 4.83870 4.87363 4.87991 4.97064 5.09873 5.12539 5.17174 5.28464 5.31188 5.36438 5.41979 5.55985 5.67528 5.81849 5.84620 6.26593 6.43025 6.77381 6.83823 7.05945 7.51608 8.49640 9.19105 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.002273 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.066077 B =12316.058231 C =12945.707594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.048 4.048 3 C -0.166 4.166 4 C -0.049 4.049 5 C -0.114 4.114 6 C -0.183 4.183 7 C 0.117 3.883 8 O -0.321 6.321 9 C 0.047 3.953 10 C 0.514 3.486 11 O -0.571 6.571 12 N -0.706 5.706 13 C 0.142 3.858 14 C 0.092 3.908 15 O -0.544 6.544 16 C 0.130 3.870 17 N -0.631 5.631 18 C -0.229 4.229 19 H 0.088 0.912 20 C -0.063 4.063 21 N -0.949 5.949 22 Si 0.978 3.022 23 H -0.284 1.284 24 H -0.268 1.268 25 H -0.294 1.294 26 C 0.144 3.856 27 C -0.223 4.223 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.118 0.882 38 H 0.417 0.583 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.387 0.613 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.250 0.750 45 H 0.023 0.977 46 H 0.040 0.960 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.375 22.186 -12.217 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.048 4.048 3 C -0.184 4.184 4 C -0.049 4.049 5 C -0.170 4.170 6 C -0.202 4.202 7 C 0.072 3.928 8 O -0.235 6.235 9 C -0.031 4.031 10 C 0.301 3.699 11 O -0.449 6.449 12 N -0.361 5.361 13 C 0.018 3.982 14 C 0.050 3.950 15 O -0.350 6.350 16 C 0.004 3.996 17 N -0.359 5.359 18 C -0.357 4.357 19 H 0.106 0.894 20 C -0.256 4.256 21 N -0.597 5.597 22 Si 0.806 3.194 23 H -0.211 1.211 24 H -0.193 1.193 25 H -0.220 1.220 26 C 0.018 3.982 27 C -0.242 4.242 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.150 0.850 37 H 0.135 0.865 38 H 0.255 0.745 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.237 0.763 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.041 0.959 46 H 0.059 0.941 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.974 21.619 -11.980 25.971 hybrid contribution -0.148 -0.399 1.260 1.330 sum -8.122 21.219 -10.720 25.123 Atomic orbital electron populations 1.20882 0.88803 1.03936 1.03483 1.20086 0.97576 0.92086 0.95099 1.21163 0.93249 0.98649 1.05324 1.19998 0.94302 0.94842 0.95780 1.20868 1.00041 0.92706 1.03422 1.20473 1.00391 0.90100 1.09204 1.19247 0.91520 0.85125 0.96929 1.86107 1.35888 1.12453 1.89041 1.22596 0.92713 0.80958 1.06839 1.20624 0.88911 0.84713 0.75692 1.90742 1.17755 1.86355 1.50082 1.45506 1.11222 1.04331 1.75056 1.21203 0.92271 0.82418 1.02313 1.23097 0.89954 0.94387 0.87612 1.86563 1.50519 1.43123 1.54818 1.22483 0.98069 0.94348 0.84669 1.45616 1.23458 1.65523 1.01311 1.19283 0.97801 1.34730 0.83893 0.89419 1.25655 0.97869 1.02240 0.99860 1.70000 1.16585 1.52462 1.20672 0.85070 0.78485 0.77099 0.78748 1.21073 1.19285 1.22009 1.22630 0.88993 0.94493 0.92119 1.21369 0.91893 1.00531 1.10378 0.89762 0.90693 0.90221 0.83729 0.89865 0.89692 0.91355 0.86091 0.84960 0.86451 0.74537 0.92625 0.90119 0.76279 0.91825 0.93068 0.94101 0.95907 0.94110 0.83344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 71.24 0.71 -0.35 16 2 C -0.05 -0.75 5.88 -19.88 -0.12 -0.87 16 3 C -0.17 -2.56 9.35 22.28 0.21 -2.35 16 4 C -0.05 -0.87 5.88 -19.88 -0.12 -0.99 16 5 C -0.11 -1.36 10.01 71.24 0.71 -0.64 16 6 C -0.18 -4.20 9.64 22.37 0.22 -3.99 16 7 C 0.12 2.77 6.69 22.51 0.15 2.93 16 8 O -0.32 -8.94 9.67 -73.43 -0.71 -9.65 16 9 C 0.05 0.95 5.22 71.24 0.37 1.32 16 10 C 0.51 14.93 7.91 87.66 0.69 15.62 16 11 O -0.57 -23.08 16.50 16.01 0.26 -22.82 16 12 N -0.71 -17.98 5.32 -463.06 -2.46 -20.45 16 13 C 0.14 4.74 5.33 86.38 0.46 5.20 16 14 C 0.09 3.19 1.74 -10.37 -0.02 3.17 16 15 O -0.54 -15.09 13.56 -148.98 -2.02 -17.11 16 16 C 0.13 5.27 8.10 83.17 0.67 5.94 16 17 N -0.63 -32.03 3.54 -738.47 -2.62 -34.65 16 18 C -0.23 -12.83 10.73 84.03 0.90 -11.93 16 19 H 0.09 4.70 7.84 -2.91 -0.02 4.68 16 20 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 21 N -0.95 -56.64 11.80 21.65 0.26 -56.38 16 22 Si 0.98 45.94 29.56 68.60 2.03 47.96 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 C 0.14 6.52 6.65 83.26 0.55 7.07 16 27 C -0.22 -4.02 8.69 22.36 0.19 -3.83 16 28 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 30 H 0.08 0.57 8.09 -2.39 -0.02 0.55 16 31 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 34 H 0.07 0.83 8.09 -2.38 -0.02 0.81 16 35 H 0.12 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.13 1.61 7.65 -2.38 -0.02 1.59 16 37 H 0.12 1.85 7.67 -2.39 -0.02 1.83 16 38 H 0.42 7.18 7.24 -92.71 -0.67 6.51 16 39 H 0.06 2.36 7.94 -2.39 -0.02 2.34 16 40 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.39 6.74 7.50 -74.05 -0.56 6.19 16 42 H 0.06 2.39 8.12 -2.39 -0.02 2.37 16 43 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 45 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.04 2.01 7.55 -2.38 -0.02 1.99 16 47 H 0.15 1.89 6.30 -2.91 -0.02 1.87 16 Total: -1.00 -80.15 393.86 0.57 -79.58 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -0.23 Total: 20.31 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 6.06 Total: 13.21 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -4.82 Total: -111.48 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -2.47 Total: -49.58 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -80.15 0.57 -79.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569789022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.689 kcal (2) G-P(sol) polarization free energy of solvation -80.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds