Wall clock time and date at job start Tue Mar 31 2020 17:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38291 * 119.94357 * 2 1 4 4 C 1.38123 * 120.05669 * 179.70343 * 3 2 1 5 5 C 1.38758 * 119.94252 * 0.59463 * 4 3 2 6 6 O 1.35899 * 120.05505 * 179.70368 * 5 4 3 7 7 C 1.42899 * 117.00043 * 359.72259 * 6 5 4 8 8 C 1.50698 * 109.46759 * 180.02562 * 7 6 5 9 9 O 1.21274 * 120.00380 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99587 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99786 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46955 * 179.97438 * 11 10 8 13 13 O 1.42908 * 113.41344 * 51.80253 * 12 11 10 14 14 C 1.53496 * 114.20582 * 184.99850 * 12 11 10 15 15 N 1.47066 * 87.98324 * 87.52363 * 14 12 11 16 16 C 1.36935 * 136.05754 * 207.07881 * 15 14 12 17 17 H 1.07998 * 119.99911 * 6.92202 * 16 15 14 18 18 C 1.38813 * 120.00005 * 186.91383 * 16 15 14 19 19 N 1.31622 * 119.99700 * 172.39403 * 18 16 15 20 20 Si 1.86800 * 120.00000 * 352.66434 * 18 16 15 21 21 H 1.48502 * 109.46856 * 175.03660 * 20 18 16 22 22 H 1.48492 * 109.47222 * 295.04106 * 20 18 16 23 23 H 1.48506 * 109.46692 * 55.04102 * 20 18 16 24 24 C 1.47066 * 87.88242 * 27.34248 * 15 14 12 25 25 C 1.38707 * 119.88480 * 359.42733 * 5 4 3 26 26 C 1.50702 * 120.02671 * 180.29519 * 25 5 4 27 27 C 1.38164 * 119.95006 * 0.27810 * 25 5 4 28 28 H 1.09000 * 109.47061 * 269.97470 * 1 2 3 29 29 H 1.09003 * 109.47404 * 29.97600 * 1 2 3 30 30 H 1.09007 * 109.46902 * 149.97681 * 1 2 3 31 31 H 1.07999 * 119.96989 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.03013 * 180.33025 * 4 3 2 33 33 H 1.08998 * 109.46918 * 60.00404 * 7 6 5 34 34 H 1.08993 * 109.47276 * 300.00530 * 7 6 5 35 35 H 0.97000 * 120.00162 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.47105 * 59.99807 * 11 10 8 37 37 H 1.08993 * 109.47431 * 299.99723 * 11 10 8 38 38 H 0.96700 * 113.99852 * 313.20242 * 13 12 11 39 39 H 1.09001 * 113.47021 * 332.74213 * 14 12 11 40 40 H 1.09004 * 113.52355 * 202.30844 * 14 12 11 41 41 H 0.97000 * 120.00276 * 5.37888 * 19 18 16 42 42 H 1.09001 * 113.46890 * 87.44275 * 24 15 14 43 43 H 1.09003 * 113.46343 * 217.87257 * 24 15 14 44 44 H 1.09001 * 109.46985 * 90.00017 * 26 25 5 45 45 H 1.08998 * 109.47120 * 210.00469 * 26 25 5 46 46 H 1.09004 * 109.47186 * 330.00163 * 26 25 5 47 47 H 1.08004 * 119.97892 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2011 0.0062 5 6 4.2735 0.0001 -0.0001 6 8 5.6325 0.0001 -0.0001 7 6 6.2812 1.2734 0.0004 8 6 7.7752 1.0759 -0.0004 9 8 8.2387 -0.0447 -0.0007 10 7 8.5961 2.1448 0.0004 11 6 10.0485 1.9529 0.0003 12 6 10.7431 3.3161 0.0007 13 8 10.2783 4.1899 1.0316 14 6 12.2715 3.2438 -0.1214 15 7 12.1027 3.2414 -1.5824 16 6 12.8089 2.7677 -2.6557 17 1 13.6821 2.1521 -2.4984 18 6 12.4022 3.0787 -3.9460 19 7 13.1600 2.7522 -4.9715 20 14 10.7831 3.9673 -4.2264 21 1 10.6374 4.2870 -5.6692 22 1 9.6597 3.0966 -3.7963 23 1 10.7654 5.2247 -3.4364 24 6 10.8450 3.9774 -1.3836 25 6 3.5788 -1.2005 -0.0005 26 6 4.3304 -2.5067 -0.0006 27 6 2.1971 -1.1979 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6559 2.1328 0.0004 32 1 4.1171 2.1371 0.0116 33 1 5.9883 1.8300 0.8906 34 1 5.9882 1.8308 -0.8893 35 1 8.2254 3.0412 0.0011 36 1 10.3414 1.3965 -0.8901 37 1 10.3414 1.3953 0.8898 38 1 9.3152 4.2332 1.1059 39 1 12.6948 2.3180 0.2682 40 1 12.7805 4.1311 0.2552 41 1 13.9632 2.2264 -4.8330 42 1 10.9770 5.0585 -1.3396 43 1 10.0530 3.6765 -2.0694 44 1 4.5113 -2.8218 1.0271 45 1 3.7404 -3.2653 -0.5148 46 1 5.2831 -2.3776 -0.5141 47 1 1.6557 -2.1324 -0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569789191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:30 Heat of formation + Delta-G solvation = -32.335614 kcal Electronic energy + Delta-G solvation = -28335.468002 eV Core-core repulsion = 24293.038001 eV Total energy + Delta-G solvation = -4042.430001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.78260 -40.03568 -39.04075 -37.71523 -35.47209 -34.29628 -33.52263 -32.33441 -31.90207 -29.86816 -28.13724 -27.47080 -26.43025 -25.71924 -25.56986 -22.66090 -21.80177 -20.97430 -20.73072 -19.36134 -18.45099 -18.08832 -17.53073 -16.71253 -16.60391 -16.25879 -15.86532 -15.29521 -15.06653 -15.01950 -14.63919 -14.38045 -14.23099 -13.83674 -13.68541 -13.46882 -13.37307 -13.22280 -13.05050 -12.96009 -12.68539 -12.38295 -12.19141 -12.17016 -12.02117 -11.74054 -11.58760 -11.18238 -11.13178 -11.11398 -10.77505 -10.43850 -10.19817 -9.96707 -9.30122 -9.25389 -9.11374 -8.99989 -8.95347 -8.26179 -7.27028 -6.39831 -3.32550 1.02101 1.10995 2.31460 2.44430 3.30588 3.35498 3.40371 3.42081 3.56663 4.15583 4.32501 4.46280 4.50375 4.51303 4.58578 4.64103 4.68916 4.70490 4.74852 4.90116 4.93126 4.98330 5.14513 5.26713 5.34471 5.38290 5.41514 5.54730 5.58806 5.59909 5.64139 5.94804 5.98745 6.02663 6.03578 6.11659 6.17349 6.18534 6.21877 6.28419 6.30173 6.49238 6.53222 6.95100 7.05124 7.26254 7.67437 8.03611 8.16615 8.89321 9.40348 10.23434 11.12816 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.002423 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.771579 B =11553.687863 C =11924.482424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.203 4.203 5 C 0.123 3.877 6 O -0.285 6.285 7 C 0.041 3.959 8 C 0.516 3.484 9 O -0.510 6.510 10 N -0.725 5.725 11 C 0.126 3.874 12 C 0.064 3.936 13 O -0.545 6.545 14 C 0.144 3.856 15 N -0.619 5.619 16 C -0.305 4.305 17 H 0.087 0.913 18 C -0.023 4.023 19 N -0.930 5.930 20 Si 1.070 2.930 21 H -0.293 1.293 22 H -0.294 1.294 23 H -0.286 1.286 24 C 0.079 3.921 25 C -0.107 4.107 26 C -0.109 4.109 27 C -0.084 4.084 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.396 0.604 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.364 0.636 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.263 0.737 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.321 -2.186 13.765 28.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.123 4.123 3 C -0.104 4.104 4 C -0.221 4.221 5 C 0.078 3.922 6 O -0.197 6.197 7 C -0.037 4.037 8 C 0.300 3.700 9 O -0.384 6.384 10 N -0.380 5.380 11 C 0.003 3.997 12 C 0.022 3.978 13 O -0.348 6.348 14 C 0.017 3.983 15 N -0.349 5.349 16 C -0.431 4.431 17 H 0.104 0.896 18 C -0.222 4.222 19 N -0.572 5.572 20 Si 0.903 3.097 21 H -0.221 1.221 22 H -0.223 1.223 23 H -0.213 1.213 24 C -0.047 4.047 25 C -0.108 4.108 26 C -0.165 4.165 27 C -0.102 4.102 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.231 0.769 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.210 0.790 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -24.974 -2.533 12.459 28.024 hybrid contribution 0.234 0.166 1.054 1.092 sum -24.740 -2.367 13.513 28.289 Atomic orbital electron populations 1.20717 0.91074 1.02651 1.02111 1.19820 0.96194 0.92995 1.03331 1.20791 0.93195 0.97703 0.98748 1.21235 0.95499 0.96822 1.08593 1.18867 0.81951 0.93916 0.97492 1.86155 1.16114 1.28950 1.88499 1.22470 0.91214 0.86155 1.03909 1.19909 0.87568 0.85200 0.77278 1.90778 1.77130 1.23409 1.47072 1.45741 1.07356 1.08646 1.76294 1.21621 0.77161 0.96553 1.04404 1.23737 0.97544 0.88527 0.88008 1.86626 1.25560 1.66428 1.56217 1.22273 0.89684 1.00106 0.86238 1.45682 1.23114 1.64593 1.01555 1.20095 1.09642 1.29900 0.83455 0.89563 1.25742 1.04426 1.01406 0.90603 1.70912 1.15933 1.39135 1.31172 0.83700 0.74972 0.75974 0.75091 1.22067 1.22267 1.21319 1.23467 0.91029 0.96878 0.93349 1.19290 0.93214 0.93653 1.04637 1.20653 1.00479 0.92884 1.02514 1.20773 0.92276 0.97880 0.99275 0.91447 0.91698 0.91681 0.85806 0.85338 0.88886 0.88804 0.76946 0.88449 0.90366 0.78970 0.92654 0.92836 0.92717 0.92644 0.93005 0.91267 0.91709 0.90572 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.01 36.01 0.36 -0.25 16 2 C -0.12 -1.01 5.88 -104.60 -0.62 -1.63 16 3 C -0.09 -0.71 9.69 -39.60 -0.38 -1.10 16 4 C -0.20 -1.85 9.04 -39.43 -0.36 -2.21 16 5 C 0.12 1.39 6.66 -39.22 -0.26 1.13 16 6 O -0.28 -3.67 8.71 -39.34 -0.34 -4.02 16 7 C 0.04 0.41 5.22 36.00 0.19 0.60 16 8 C 0.52 7.10 7.91 -10.99 -0.09 7.01 16 9 O -0.51 -9.53 16.50 -14.35 -0.24 -9.76 16 10 N -0.73 -8.87 5.32 -60.30 -0.32 -9.19 16 11 C 0.13 1.98 5.33 -4.04 -0.02 1.95 16 12 C 0.06 1.05 1.74 -89.98 -0.16 0.90 16 13 O -0.55 -7.45 13.56 -35.23 -0.48 -7.92 16 14 C 0.14 2.80 8.10 -8.52 -0.07 2.73 16 15 N -0.62 -14.79 3.47 -184.61 -0.64 -15.43 16 16 C -0.31 -8.65 11.08 -15.06 -0.17 -8.81 16 17 H 0.09 2.57 8.05 -52.49 -0.42 2.15 16 18 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 19 N -0.93 -29.17 13.70 55.49 0.76 -28.41 16 20 Si 1.07 26.31 25.13 -169.99 -4.27 22.03 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.29 -6.81 6.63 56.52 0.37 -6.44 16 23 H -0.29 -6.50 6.13 56.52 0.35 -6.15 16 24 C 0.08 1.58 5.12 -8.39 -0.04 1.54 16 25 C -0.11 -1.15 5.89 -104.47 -0.62 -1.76 16 26 C -0.11 -1.08 9.79 36.01 0.35 -0.73 16 27 C -0.08 -0.75 9.35 -39.61 -0.37 -1.12 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.31 8.08 -51.93 -0.42 -0.10 16 30 H 0.06 0.32 8.08 -51.92 -0.42 -0.10 16 31 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 33 H 0.09 0.62 7.65 -51.93 -0.40 0.23 16 34 H 0.09 0.75 7.67 -51.93 -0.40 0.35 16 35 H 0.40 3.33 7.24 -40.82 -0.30 3.04 16 36 H 0.10 1.90 7.94 -51.93 -0.41 1.49 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.36 3.24 7.50 45.56 0.34 3.58 16 39 H 0.06 1.03 8.12 -51.93 -0.42 0.60 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.26 8.13 8.73 -40.82 -0.36 7.78 16 42 H 0.06 1.12 7.71 -51.93 -0.40 0.72 16 43 H 0.05 1.06 4.65 -51.93 -0.24 0.81 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 46 H 0.08 0.90 7.53 -51.93 -0.39 0.51 16 47 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -36.52 384.61 -8.48 -44.99 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.40 Total: 4.40 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.34 Total: -2.50 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.20 Total: -53.03 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -1.06 Total: -21.70 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -4.27 Total: 22.03 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.52 -8.48 -44.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569789191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.656 kcal (2) G-P(sol) polarization free energy of solvation -36.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds