Wall clock time and date at job start Tue Mar 31 2020 17:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38291 * 119.94357 * 2 1 4 4 C 1.38123 * 120.05669 * 179.70343 * 3 2 1 5 5 C 1.38758 * 119.94252 * 0.59463 * 4 3 2 6 6 O 1.35899 * 120.05505 * 179.70368 * 5 4 3 7 7 C 1.42899 * 117.00043 * 359.72259 * 6 5 4 8 8 C 1.50698 * 109.46759 * 180.02562 * 7 6 5 9 9 O 1.21274 * 120.00380 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99587 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99786 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46955 * 179.97438 * 11 10 8 13 13 O 1.42908 * 113.41344 * 51.80253 * 12 11 10 14 14 C 1.53496 * 114.20582 * 184.99850 * 12 11 10 15 15 N 1.47066 * 87.98324 * 87.52363 * 14 12 11 16 16 C 1.36935 * 136.05754 * 207.07881 * 15 14 12 17 17 H 1.07998 * 119.99911 * 6.92202 * 16 15 14 18 18 C 1.38813 * 120.00005 * 186.91383 * 16 15 14 19 19 N 1.31622 * 119.99700 * 172.39403 * 18 16 15 20 20 Si 1.86800 * 120.00000 * 352.66434 * 18 16 15 21 21 H 1.48502 * 109.46856 * 175.03660 * 20 18 16 22 22 H 1.48492 * 109.47222 * 295.04106 * 20 18 16 23 23 H 1.48506 * 109.46692 * 55.04102 * 20 18 16 24 24 C 1.47066 * 87.88242 * 27.34248 * 15 14 12 25 25 C 1.38707 * 119.88480 * 359.42733 * 5 4 3 26 26 C 1.50702 * 120.02671 * 180.29519 * 25 5 4 27 27 C 1.38164 * 119.95006 * 0.27810 * 25 5 4 28 28 H 1.09000 * 109.47061 * 269.97470 * 1 2 3 29 29 H 1.09003 * 109.47404 * 29.97600 * 1 2 3 30 30 H 1.09007 * 109.46902 * 149.97681 * 1 2 3 31 31 H 1.07999 * 119.96989 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.03013 * 180.33025 * 4 3 2 33 33 H 1.08998 * 109.46918 * 60.00404 * 7 6 5 34 34 H 1.08993 * 109.47276 * 300.00530 * 7 6 5 35 35 H 0.97000 * 120.00162 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.47105 * 59.99807 * 11 10 8 37 37 H 1.08993 * 109.47431 * 299.99723 * 11 10 8 38 38 H 0.96700 * 113.99852 * 313.20242 * 13 12 11 39 39 H 1.09001 * 113.47021 * 332.74213 * 14 12 11 40 40 H 1.09004 * 113.52355 * 202.30844 * 14 12 11 41 41 H 0.97000 * 120.00276 * 5.37888 * 19 18 16 42 42 H 1.09001 * 113.46890 * 87.44275 * 24 15 14 43 43 H 1.09003 * 113.46343 * 217.87257 * 24 15 14 44 44 H 1.09001 * 109.46985 * 90.00017 * 26 25 5 45 45 H 1.08998 * 109.47120 * 210.00469 * 26 25 5 46 46 H 1.09004 * 109.47186 * 330.00163 * 26 25 5 47 47 H 1.08004 * 119.97892 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2011 0.0062 5 6 4.2735 0.0001 -0.0001 6 8 5.6325 0.0001 -0.0001 7 6 6.2812 1.2734 0.0004 8 6 7.7752 1.0759 -0.0004 9 8 8.2387 -0.0447 -0.0007 10 7 8.5961 2.1448 0.0004 11 6 10.0485 1.9529 0.0003 12 6 10.7431 3.3161 0.0007 13 8 10.2783 4.1899 1.0316 14 6 12.2715 3.2438 -0.1214 15 7 12.1027 3.2414 -1.5824 16 6 12.8089 2.7677 -2.6557 17 1 13.6821 2.1521 -2.4984 18 6 12.4022 3.0787 -3.9460 19 7 13.1600 2.7522 -4.9715 20 14 10.7831 3.9673 -4.2264 21 1 10.6374 4.2870 -5.6692 22 1 9.6597 3.0966 -3.7963 23 1 10.7654 5.2247 -3.4364 24 6 10.8450 3.9774 -1.3836 25 6 3.5788 -1.2005 -0.0005 26 6 4.3304 -2.5067 -0.0006 27 6 2.1971 -1.1979 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6559 2.1328 0.0004 32 1 4.1171 2.1371 0.0116 33 1 5.9883 1.8300 0.8906 34 1 5.9882 1.8308 -0.8893 35 1 8.2254 3.0412 0.0011 36 1 10.3414 1.3965 -0.8901 37 1 10.3414 1.3953 0.8898 38 1 9.3152 4.2332 1.1059 39 1 12.6948 2.3180 0.2682 40 1 12.7805 4.1311 0.2552 41 1 13.9632 2.2264 -4.8330 42 1 10.9770 5.0585 -1.3396 43 1 10.0530 3.6765 -2.0694 44 1 4.5113 -2.8218 1.0271 45 1 3.7404 -3.2653 -0.5148 46 1 5.2831 -2.3776 -0.5141 47 1 1.6557 -2.1324 -0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569789191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:28 Heat of formation + Delta-G solvation = -60.420923 kcal Electronic energy + Delta-G solvation = -28336.685872 eV Core-core repulsion = 24293.038001 eV Total energy + Delta-G solvation = -4043.647871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.69004 -41.19771 -40.23132 -38.50598 -36.89293 -35.46364 -34.45354 -34.17761 -32.50023 -31.00197 -29.64727 -28.13233 -27.52315 -27.20680 -26.62109 -23.80016 -23.19561 -21.79048 -21.62382 -20.94972 -19.58204 -19.19594 -19.10577 -17.90846 -17.48986 -17.31129 -17.13221 -16.46782 -16.15659 -16.02287 -15.69986 -15.49248 -15.21428 -15.12283 -14.97774 -14.69729 -14.44973 -14.09907 -13.98966 -13.77386 -13.73695 -13.67051 -13.45238 -13.34009 -12.80165 -12.72872 -12.71966 -12.53074 -12.21432 -12.12646 -11.83174 -11.78186 -11.76983 -11.39971 -11.10396 -11.03919 -10.64434 -10.32993 -9.75567 -9.28198 -8.94018 -8.70648 -5.53795 0.38160 0.44918 1.32188 1.37205 1.43463 1.45107 1.63815 2.50914 2.55016 2.74172 2.76144 3.04935 3.18459 3.27805 3.48940 3.64373 3.82790 3.89507 3.99856 4.07201 4.07721 4.20509 4.35886 4.39383 4.43132 4.55680 4.57923 4.62918 4.68131 4.68790 4.74344 4.76052 4.80594 4.91088 5.02019 5.04616 5.11589 5.12487 5.17212 5.33350 5.37832 5.49311 5.70394 5.87162 5.89612 6.24920 6.43664 6.63780 6.71674 7.04568 7.25527 8.17374 8.84906 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.002423 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.771579 B =11553.687863 C =11924.482424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.127 4.127 3 C -0.092 4.092 4 C -0.203 4.203 5 C 0.097 3.903 6 O -0.318 6.318 7 C 0.044 3.956 8 C 0.513 3.487 9 O -0.569 6.569 10 N -0.709 5.709 11 C 0.134 3.866 12 C 0.107 3.893 13 O -0.537 6.537 14 C 0.133 3.867 15 N -0.651 5.651 16 C -0.289 4.289 17 H 0.052 0.948 18 C -0.087 4.087 19 N -0.968 5.968 20 Si 1.109 2.891 21 H -0.306 1.306 22 H -0.273 1.273 23 H -0.252 1.252 24 C 0.072 3.928 25 C -0.132 4.132 26 C -0.105 4.105 27 C -0.091 4.091 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.134 0.866 34 H 0.121 0.879 35 H 0.419 0.581 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.391 0.609 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.246 0.754 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.048 0.952 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.358 0.277 15.776 33.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.128 4.128 3 C -0.109 4.109 4 C -0.222 4.222 5 C 0.052 3.948 6 O -0.232 6.232 7 C -0.033 4.033 8 C 0.300 3.700 9 O -0.447 6.447 10 N -0.365 5.365 11 C 0.010 3.990 12 C 0.064 3.936 13 O -0.344 6.344 14 C 0.007 3.993 15 N -0.382 5.382 16 C -0.417 4.417 17 H 0.070 0.930 18 C -0.278 4.278 19 N -0.613 5.613 20 Si 0.934 3.066 21 H -0.234 1.234 22 H -0.200 1.200 23 H -0.177 1.177 24 C -0.053 4.053 25 C -0.133 4.133 26 C -0.161 4.161 27 C -0.109 4.109 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.172 0.828 33 H 0.151 0.849 34 H 0.138 0.862 35 H 0.258 0.742 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.242 0.758 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -29.059 -0.013 14.552 32.499 hybrid contribution 1.493 -0.631 0.574 1.720 sum -27.566 -0.643 15.126 31.450 Atomic orbital electron populations 1.20766 0.89210 1.03529 1.02930 1.20211 0.97663 0.92807 1.02083 1.21171 0.93123 0.98773 0.97866 1.21535 0.96041 0.96920 1.07678 1.19117 0.81421 0.95033 0.99185 1.86103 1.17252 1.30631 1.89170 1.22622 0.87856 0.85871 1.06995 1.20683 0.89360 0.84346 0.75601 1.90760 1.78392 1.25805 1.49760 1.45504 1.05707 1.09793 1.75486 1.21271 0.79313 0.95721 1.02694 1.22856 0.95439 0.88464 0.86858 1.86593 1.28257 1.65223 1.54327 1.22489 0.92538 1.00627 0.83637 1.45653 1.24738 1.65358 1.02438 1.19917 1.08332 1.28138 0.85277 0.93034 1.27177 1.07312 1.02706 0.90637 1.71025 1.16491 1.41429 1.32389 0.83289 0.71758 0.76732 0.74820 1.23382 1.19951 1.17653 1.23686 0.89035 0.97128 0.95424 1.19535 0.94194 0.93738 1.05844 1.20593 0.99465 0.93738 1.02351 1.21008 0.91665 0.99160 0.99055 0.90550 0.90631 0.91074 0.83311 0.82833 0.84850 0.86186 0.74237 0.92579 0.89946 0.75843 0.92428 0.91834 0.94437 0.91607 0.92831 0.91266 0.90101 0.93285 0.83852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 71.24 0.71 -0.17 16 2 C -0.13 -1.77 5.88 -19.85 -0.12 -1.88 16 3 C -0.09 -1.21 9.69 22.25 0.22 -0.99 16 4 C -0.20 -3.09 9.04 22.37 0.20 -2.89 16 5 C 0.10 2.08 6.66 22.51 0.15 2.23 16 6 O -0.32 -7.95 8.71 -73.38 -0.64 -8.59 16 7 C 0.04 0.76 5.22 71.24 0.37 1.13 16 8 C 0.51 13.26 7.91 87.66 0.69 13.95 16 9 O -0.57 -21.55 16.50 16.03 0.26 -21.29 16 10 N -0.71 -15.20 5.32 -463.07 -2.46 -17.66 16 11 C 0.13 4.00 5.33 86.38 0.46 4.46 16 12 C 0.11 3.18 1.74 -10.38 -0.02 3.16 16 13 O -0.54 -12.04 13.56 -148.98 -2.02 -14.06 16 14 C 0.13 4.99 8.10 83.17 0.67 5.66 16 15 N -0.65 -30.77 3.47 -738.47 -2.56 -33.34 16 16 C -0.29 -16.87 11.08 84.03 0.93 -15.94 16 17 H 0.05 3.26 8.05 -2.91 -0.02 3.24 16 18 C -0.09 -5.21 5.50 84.86 0.47 -4.74 16 19 N -0.97 -63.22 13.70 21.65 0.30 -62.93 16 20 Si 1.11 52.43 25.13 68.60 1.72 54.15 16 21 H -0.31 -14.98 7.11 99.48 0.71 -14.28 16 22 H -0.27 -11.78 6.63 99.48 0.66 -11.12 16 23 H -0.25 -10.39 6.13 99.48 0.61 -9.78 16 24 C 0.07 2.69 5.12 83.26 0.43 3.11 16 25 C -0.13 -2.77 5.89 -19.77 -0.12 -2.89 16 26 C -0.10 -2.16 9.79 71.24 0.70 -1.46 16 27 C -0.09 -1.48 9.35 22.25 0.21 -1.27 16 28 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.47 8.08 -2.39 -0.02 0.45 16 30 H 0.07 0.50 8.08 -2.38 -0.02 0.48 16 31 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.15 1.38 6.30 -2.91 -0.02 1.37 16 33 H 0.13 1.17 7.65 -2.39 -0.02 1.15 16 34 H 0.12 1.42 7.67 -2.39 -0.02 1.40 16 35 H 0.42 5.00 7.24 -92.71 -0.67 4.33 16 36 H 0.06 2.19 7.94 -2.39 -0.02 2.18 16 37 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.39 4.59 7.50 -74.06 -0.56 4.03 16 39 H 0.06 2.11 8.12 -2.39 -0.02 2.09 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.25 16.20 8.73 -92.71 -0.81 15.39 16 42 H 0.07 2.37 7.71 -2.39 -0.02 2.35 16 43 H 0.05 1.99 4.65 -2.39 -0.01 1.98 16 44 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.08 1.30 8.09 -2.39 -0.02 1.29 16 46 H 0.05 1.25 7.53 -2.39 -0.02 1.23 16 47 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -85.28 384.61 0.15 -85.13 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -0.41 Total: 17.12 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.96 Total: 1.47 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -4.73 Total: -113.93 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -2.39 Total: -43.94 kcal Atomic # 14 Polarization: 52.43 SS G_CDS: 1.72 Total: 54.15 kcal Total: -85.28 0.15 -85.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569789191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.705 kcal (2) G-P(sol) polarization free energy of solvation -85.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds