Wall clock time and date at job start Tue Mar 31 2020 18:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35918 * 116.99733 * 2 1 4 4 C 1.38845 * 119.98591 * 359.97328 * 3 2 1 5 5 C 1.38251 * 120.23904 * 180.02562 * 4 3 2 6 6 C 1.37998 * 120.20180 * 359.97438 * 5 4 3 7 7 C 1.39562 * 119.97176 * 359.97438 * 6 5 4 8 8 C 1.47866 * 120.12051 * 180.27341 * 7 6 5 9 9 O 1.21557 * 119.99811 * 234.38542 * 8 7 6 10 10 N 1.34772 * 119.99840 * 54.38139 * 8 7 6 11 11 C 1.47154 * 120.98116 * 5.55971 * 10 8 7 12 12 C 1.53300 * 108.37921 * 129.44116 * 11 10 8 13 13 O 1.42959 * 109.22228 * 52.30555 * 12 11 10 14 14 C 1.42958 * 114.16953 * 297.41836 * 13 12 11 15 15 H 1.09002 * 109.51309 * 302.60740 * 14 13 12 16 16 C 1.53000 * 109.51527 * 182.50471 * 14 13 12 17 17 N 1.46499 * 109.47116 * 64.99861 * 16 14 13 18 18 C 1.36941 * 119.99960 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99512 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99841 * 179.97438 * 18 17 16 21 21 N 1.31611 * 119.99814 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99854 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46662 * 90.00063 * 22 20 18 24 24 H 1.48492 * 109.47169 * 209.99833 * 22 20 18 25 25 H 1.48498 * 109.46932 * 330.00205 * 22 20 18 26 26 C 1.47150 * 120.98312 * 185.28292 * 10 8 7 27 27 C 1.38454 * 119.98290 * 179.97438 * 3 2 1 28 28 C 1.50707 * 120.10005 * 359.97438 * 27 3 2 29 29 H 1.08996 * 109.47435 * 300.00490 * 1 2 3 30 30 H 1.09004 * 109.46661 * 60.00272 * 1 2 3 31 31 H 1.08996 * 109.46784 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.88098 * 0.04355 * 4 3 2 33 33 H 1.08000 * 119.89555 * 180.02562 * 5 4 3 34 34 H 1.08007 * 120.01297 * 180.02562 * 6 5 4 35 35 H 1.08993 * 109.68523 * 249.16539 * 11 10 8 36 36 H 1.08995 * 109.68211 * 9.68616 * 11 10 8 37 37 H 1.09008 * 109.51021 * 172.22585 * 12 11 10 38 38 H 1.08994 * 109.51569 * 292.38090 * 12 11 10 39 39 H 1.09006 * 109.46998 * 184.99852 * 16 14 13 40 40 H 1.08993 * 109.47047 * 304.99612 * 16 14 13 41 41 H 0.97003 * 119.99811 * 359.97438 * 17 16 14 42 42 H 0.97009 * 119.99978 * 180.02562 * 21 20 18 43 43 H 1.09007 * 109.67912 * 350.28078 * 26 10 8 44 44 H 1.08999 * 109.68064 * 110.83130 * 26 10 8 45 45 H 1.09003 * 109.46902 * 274.85289 * 28 27 3 46 46 H 1.08999 * 109.47206 * 34.85939 * 28 27 3 47 47 H 1.09002 * 109.46740 * 154.85587 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2895 2.3753 -0.0006 5 6 1.9116 3.6099 -0.0011 6 6 3.2891 3.6931 -0.0005 7 6 4.0579 2.5284 0.0011 8 6 5.5341 2.6137 0.0078 9 8 6.1800 2.0381 -0.8460 10 7 6.1634 3.3298 0.9605 11 6 5.4134 3.9344 2.0729 12 6 6.0989 3.5432 3.3871 13 8 7.4889 3.8679 3.3078 14 6 8.1986 3.1584 2.2897 15 1 8.0922 2.0857 2.4518 16 6 9.6798 3.5383 2.3397 17 7 10.2588 3.0811 3.6054 18 6 11.5816 3.3103 3.8755 19 1 12.1980 3.8276 3.1553 20 6 12.1300 2.8775 5.0751 21 7 11.3788 2.2466 5.9524 22 14 13.9346 3.1894 5.4433 23 1 14.0801 4.4957 6.1344 24 1 14.4560 2.1070 6.3160 25 1 14.7021 3.2136 4.1723 26 6 7.6214 3.5251 0.9224 27 6 3.4287 1.2832 0.0005 28 6 4.2514 0.0205 0.0017 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 0.2111 2.3162 -0.0003 33 1 1.3177 4.5120 -0.0011 34 1 3.7719 4.6593 -0.0006 35 1 5.4124 5.0193 1.9682 36 1 4.3883 3.5643 2.0686 37 1 5.6436 4.0908 4.2123 38 1 5.9842 2.4720 3.5528 39 1 10.2042 3.0664 1.5087 40 1 9.7798 4.6211 2.2644 41 1 9.7051 2.6161 4.2520 42 1 11.7619 1.9445 6.7909 43 1 8.0577 2.8834 0.1568 44 1 7.8463 4.5681 0.6998 45 1 4.3764 -0.3307 1.0260 46 1 3.7435 -0.7447 -0.5854 47 1 5.2294 0.2237 -0.4347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570153115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:26 Heat of formation + Delta-G solvation = -90.355198 kcal Electronic energy + Delta-G solvation = -29030.395022 eV Core-core repulsion = 24985.449104 eV Total energy + Delta-G solvation = -4044.945919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.98473 -40.89851 -39.63446 -38.11278 -36.69227 -35.83358 -34.00309 -33.82915 -32.17006 -31.33386 -29.37739 -28.51490 -27.95151 -27.15335 -25.07458 -24.61187 -23.46335 -22.69125 -22.20634 -20.55107 -19.29362 -19.05783 -17.99534 -17.65901 -17.50656 -17.10831 -16.75030 -16.72205 -16.61503 -16.34768 -15.99945 -15.69344 -15.30739 -15.03841 -14.85066 -14.56286 -14.48484 -14.30413 -14.16139 -13.96967 -13.50868 -13.39019 -13.14627 -13.08589 -12.91157 -12.77700 -12.68467 -12.59805 -12.27099 -12.06839 -12.00565 -11.99582 -11.86236 -11.62229 -11.20307 -10.97393 -10.96300 -9.92667 -9.68585 -9.19422 -9.01564 -7.94112 -5.23917 -0.11981 0.34278 1.39449 1.47825 1.50585 1.58921 1.71293 2.36166 2.56616 2.62291 2.72340 3.29410 3.39788 3.54079 3.70597 3.85510 3.90058 3.96822 3.99722 4.04711 4.11528 4.20093 4.30720 4.40930 4.42418 4.42799 4.43405 4.50326 4.61872 4.62677 4.63647 4.69557 4.72249 4.77602 4.82708 4.93728 5.07449 5.12616 5.20116 5.27355 5.30971 5.35808 5.48581 5.64803 6.14847 6.20024 6.27132 6.38391 6.88656 7.33088 8.06600 8.31391 9.29761 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023660 B = 0.002307 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.150368 B =12133.457738 C =12306.072244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.334 6.334 3 C 0.114 3.886 4 C -0.179 4.179 5 C -0.078 4.078 6 C -0.121 4.121 7 C -0.107 4.107 8 C 0.564 3.436 9 O -0.569 6.569 10 N -0.605 5.605 11 C 0.077 3.923 12 C 0.039 3.961 13 O -0.384 6.384 14 C 0.088 3.912 15 H 0.043 0.957 16 C 0.161 3.839 17 N -0.741 5.741 18 C -0.247 4.247 19 H 0.079 0.921 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.979 3.021 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.268 1.268 26 C 0.094 3.906 27 C -0.095 4.095 28 C -0.119 4.119 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.163 0.837 33 H 0.169 0.831 34 H 0.146 0.854 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.131 0.869 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.035 0.965 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.602 2.849 -13.044 32.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.248 6.248 3 C 0.069 3.931 4 C -0.198 4.198 5 C -0.096 4.096 6 C -0.140 4.140 7 C -0.110 4.110 8 C 0.354 3.646 9 O -0.449 6.449 10 N -0.337 5.337 11 C -0.045 4.045 12 C -0.038 4.038 13 O -0.303 6.303 14 C 0.029 3.971 15 H 0.061 0.939 16 C 0.034 3.966 17 N -0.384 5.384 18 C -0.378 4.378 19 H 0.097 0.903 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.807 3.193 23 H -0.212 1.212 24 H -0.222 1.222 25 H -0.193 1.193 26 C -0.029 4.029 27 C -0.096 4.096 28 C -0.175 4.175 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.180 0.820 33 H 0.186 0.814 34 H 0.164 0.836 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.149 0.851 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -28.924 2.552 -13.428 31.991 hybrid contribution 0.770 -0.518 0.540 1.074 sum -28.153 2.033 -12.888 31.030 Atomic orbital electron populations 1.23397 0.76078 1.05651 1.02630 1.86079 1.23665 1.26462 1.88556 1.18749 0.90872 0.85713 0.97775 1.21766 1.01692 0.91447 1.04881 1.21266 0.93519 0.98431 0.96359 1.21372 0.94627 0.96892 1.01060 1.19399 0.91299 0.94449 1.05817 1.18714 0.88134 0.77096 0.80648 1.90745 1.68119 1.46333 1.39664 1.48158 1.07783 1.52114 1.25635 1.22753 0.96843 1.00298 0.84609 1.23210 0.81471 1.00739 0.98422 1.88097 1.21511 1.65513 1.55167 1.22372 0.92293 0.94991 0.87482 0.93895 1.20761 0.89107 0.97755 0.88972 1.42433 1.08453 1.69423 1.18078 1.19677 0.87355 1.29830 1.00953 0.90272 1.25645 1.02663 1.01715 0.97026 1.69846 1.36849 1.45732 1.09710 0.85065 0.79606 0.76824 0.77802 1.21236 1.22174 1.19258 1.22074 0.79827 1.03628 0.97341 1.19223 0.91854 0.94739 1.03819 1.20753 0.99608 0.94825 1.02350 0.91131 0.91254 0.86737 0.81989 0.81370 0.83610 0.87905 0.86685 0.85123 0.93823 0.93845 0.94750 0.79425 0.94004 0.88880 0.88562 0.91453 0.90550 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -5.79 9.62 -92.62 -0.89 -6.68 16 3 C 0.11 2.11 6.65 22.47 0.15 2.26 16 4 C -0.18 -2.13 9.03 22.42 0.20 -1.92 16 5 C -0.08 -0.81 10.03 22.22 0.22 -0.59 16 6 C -0.12 -1.84 7.87 22.53 0.18 -1.66 16 7 C -0.11 -2.42 4.58 -20.10 -0.09 -2.51 16 8 C 0.56 16.07 6.54 86.79 0.57 16.63 16 9 O -0.57 -20.48 14.56 -3.90 -0.06 -20.53 16 10 N -0.60 -15.64 3.03 -821.54 -2.49 -18.13 16 11 C 0.08 1.49 5.75 86.36 0.50 1.98 16 12 C 0.04 0.96 6.98 72.08 0.50 1.46 16 13 O -0.38 -13.50 10.33 -148.98 -1.54 -15.04 16 14 C 0.09 3.12 2.80 30.55 0.09 3.20 16 15 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 16 C 0.16 6.79 5.93 86.38 0.51 7.30 16 17 N -0.74 -39.99 5.55 -343.45 -1.91 -41.90 16 18 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 19 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 20 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 21 N -0.97 -61.52 13.06 21.65 0.28 -61.24 16 22 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 C 0.09 2.76 5.92 86.21 0.51 3.27 16 27 C -0.09 -2.23 5.93 -19.50 -0.12 -2.35 16 28 C -0.12 -3.07 9.40 71.24 0.67 -2.40 16 29 H 0.07 0.32 7.66 -2.39 -0.02 0.31 16 30 H 0.07 0.33 7.66 -2.38 -0.02 0.31 16 31 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.16 0.87 6.28 -2.91 -0.02 0.85 16 33 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 34 H 0.15 1.72 7.80 -2.91 -0.02 1.70 16 35 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.12 1.78 5.62 -2.39 -0.01 1.77 16 37 H 0.13 2.53 8.14 -2.38 -0.02 2.51 16 38 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.04 1.77 8.14 -2.38 -0.02 1.76 16 40 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.37 21.76 7.67 -92.71 -0.71 21.05 16 42 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 43 H 0.09 2.93 7.06 -2.38 -0.02 2.91 16 44 H 0.10 2.51 8.13 -2.39 -0.02 2.49 16 45 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.08 1.83 7.68 -2.39 -0.02 1.81 16 47 H 0.06 1.92 5.55 -2.39 -0.01 1.91 16 Total: -1.00 -79.10 380.17 2.02 -77.08 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.28 Total: 28.84 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 6.31 Total: 8.25 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -4.11 Total: -121.27 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -2.49 Total: -42.26 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -79.10 2.02 -77.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570153115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.274 kcal (2) G-P(sol) polarization free energy of solvation -79.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds