Wall clock time and date at job start Tue Mar 31 2020 17:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38297 * 119.96131 * 2 1 4 4 C 1.38261 * 120.14174 * 180.02562 * 3 2 1 5 5 C 1.38137 * 120.06898 * 359.97438 * 4 3 2 6 6 C 1.38851 * 119.92473 * 359.97438 * 5 4 3 7 7 N 1.39929 * 120.06690 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00045 * 18.42869 * 7 6 5 9 9 O 1.21282 * 120.00114 * 5.37738 * 8 7 6 10 10 C 1.50703 * 120.00149 * 185.38361 * 8 7 6 11 11 H 1.08997 * 109.46850 * 299.99972 * 10 8 7 12 12 C 1.52999 * 109.47390 * 59.99862 * 10 8 7 13 13 N 1.46498 * 109.46979 * 179.97438 * 10 8 7 14 14 C 1.36935 * 120.00492 * 293.73128 * 13 10 8 15 15 H 1.08009 * 119.99842 * 319.45735 * 14 13 10 16 16 C 1.38805 * 120.00641 * 139.45454 * 14 13 10 17 17 N 1.31620 * 119.99676 * 345.97201 * 16 14 13 18 18 Si 1.86798 * 120.00397 * 165.96668 * 16 14 13 19 19 H 1.48494 * 109.47150 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46992 * 120.00323 * 18 16 14 21 21 H 1.48501 * 109.47221 * 239.99823 * 18 16 14 22 22 C 1.46511 * 119.99972 * 113.73401 * 13 10 8 23 23 C 1.52997 * 109.47084 * 89.99779 * 22 13 10 24 24 C 1.50697 * 109.47223 * 180.02562 * 23 22 13 25 25 O 1.20827 * 119.99747 * 359.97438 * 24 23 22 26 26 O 1.34228 * 120.00498 * 179.97438 * 24 23 22 27 27 C 1.38085 * 119.96535 * 179.97438 * 2 1 3 28 28 C 1.50704 * 120.03491 * 0.02562 * 27 2 1 29 29 H 1.09005 * 109.46523 * 90.00596 * 1 2 3 30 30 H 1.09005 * 109.47083 * 209.99991 * 1 2 3 31 31 H 1.08997 * 109.47559 * 330.00376 * 1 2 3 32 32 H 1.08006 * 119.93186 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.96615 * 179.97438 * 4 3 2 34 34 H 1.07997 * 120.03731 * 179.70029 * 5 4 3 35 35 H 0.97000 * 120.00006 * 198.43206 * 7 6 5 36 36 H 1.09001 * 109.47338 * 54.27290 * 12 10 8 37 37 H 1.08991 * 109.47292 * 174.28043 * 12 10 8 38 38 H 1.09002 * 109.46626 * 294.28070 * 12 10 8 39 39 H 0.97005 * 120.00255 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.46924 * 210.00059 * 22 13 10 41 41 H 1.08997 * 109.46406 * 329.99666 * 22 13 10 42 42 H 1.09007 * 109.47266 * 299.99960 * 23 22 13 43 43 H 1.09003 * 109.47252 * 59.99769 * 23 22 13 44 44 H 0.96691 * 117.00092 * 179.97438 * 26 24 23 45 45 H 1.08990 * 109.47208 * 90.00571 * 28 27 2 46 46 H 1.09000 * 109.46853 * 210.00027 * 28 27 2 47 47 H 1.08995 * 109.47508 * 329.99834 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2025 -0.0005 5 6 4.2762 0.0092 -0.0005 6 6 3.5856 -1.1954 0.0005 7 7 4.2875 -2.4059 0.0000 8 6 5.5840 -2.4333 0.3675 9 8 6.1155 -1.4289 0.7913 10 6 6.3731 -3.7119 0.2516 11 1 5.9087 -4.4825 0.8668 12 6 6.3932 -4.1684 -1.2086 13 7 7.7455 -3.4819 0.7097 14 6 8.5715 -2.6469 0.0056 15 1 8.5665 -2.6669 -1.0743 16 6 9.4153 -1.7749 0.6796 17 7 9.2357 -1.5458 1.9632 18 14 10.8058 -0.9267 -0.2349 19 1 10.7930 -1.3500 -1.6581 20 1 10.6255 0.5451 -0.1550 21 1 12.1042 -1.3004 0.3815 22 6 8.2343 -4.1453 1.9211 23 6 8.8565 -5.4926 1.5490 24 6 9.3587 -6.1752 2.7951 25 8 9.2324 -5.6388 3.8704 26 8 9.9464 -7.3791 2.7106 27 6 2.1968 -1.1963 0.0005 28 6 1.4433 -2.5014 0.0005 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6560 2.1325 -0.0004 33 1 4.1169 2.1399 -0.0010 34 1 5.3562 0.0132 -0.0058 35 1 3.8411 -3.2253 -0.2649 36 1 6.7636 -3.3588 -1.8374 37 1 7.0466 -5.0349 -1.3094 38 1 5.3834 -4.4367 -1.5192 39 1 9.8255 -0.9367 2.4344 40 1 8.9858 -3.5181 2.4007 41 1 7.4032 -4.3060 2.6077 42 1 8.1050 -6.1198 1.0694 43 1 9.6876 -5.3318 0.8623 44 1 10.2526 -7.7770 3.5368 45 1 1.2621 -2.8163 -1.0270 46 1 2.0322 -3.2609 0.5148 47 1 0.4907 -2.3710 0.5140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607856893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:41 Heat of formation + Delta-G solvation = -98.366886 kcal Electronic energy + Delta-G solvation = -29470.859729 eV Core-core repulsion = 25425.566397 eV Total energy + Delta-G solvation = -4045.293331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.57792 -41.09800 -39.74634 -37.65526 -36.92472 -35.75995 -34.22358 -33.88036 -33.09446 -31.49981 -29.92277 -28.21956 -27.13872 -26.89321 -25.34712 -24.06694 -22.35103 -22.05332 -21.55441 -20.63795 -19.16378 -18.84011 -17.94629 -17.47935 -17.16183 -17.12567 -16.77402 -16.57789 -16.37181 -15.59602 -15.49919 -15.25145 -14.79688 -14.74137 -14.45001 -14.23624 -13.99182 -13.82776 -13.61598 -13.46932 -13.39318 -13.02364 -12.92912 -12.86743 -12.74801 -12.68248 -12.60715 -12.44914 -12.42853 -12.21767 -12.02518 -11.82068 -11.73359 -11.51161 -11.46000 -11.23370 -10.52556 -10.18675 -9.40562 -8.77307 -8.50418 -7.73705 -5.43889 0.43847 0.50885 1.34413 1.41931 1.45748 1.53597 2.00136 2.16279 2.37507 2.54263 2.93958 3.40976 3.64307 3.89916 3.99757 4.08522 4.22589 4.27040 4.31351 4.35544 4.43162 4.54940 4.57155 4.62158 4.75183 4.80141 4.87172 4.89475 4.94918 4.97949 5.01028 5.03177 5.13845 5.17320 5.27430 5.41875 5.46369 5.50588 5.66129 5.68549 5.73171 5.74627 5.78289 5.91909 6.26692 6.50773 6.74310 7.11828 7.22389 7.56306 7.85789 8.36876 9.22812 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.003549 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.650735 B = 7887.798915 C = 9302.234669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.073 4.073 3 C -0.152 4.152 4 C -0.115 4.115 5 C -0.183 4.183 6 C 0.149 3.851 7 N -0.666 5.666 8 C 0.472 3.528 9 O -0.516 6.516 10 C 0.145 3.855 11 H 0.103 0.897 12 C -0.136 4.136 13 N -0.564 5.564 14 C -0.247 4.247 15 H 0.063 0.937 16 C -0.025 4.025 17 N -0.904 5.904 18 Si 0.944 3.056 19 H -0.260 1.260 20 H -0.306 1.306 21 H -0.289 1.289 22 C 0.161 3.839 23 C -0.117 4.117 24 C 0.487 3.513 25 O -0.558 6.558 26 O -0.512 6.512 27 C -0.134 4.134 28 C -0.112 4.112 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.142 0.858 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.419 0.581 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.242 0.758 40 H 0.067 0.933 41 H 0.021 0.979 42 H 0.121 0.879 43 H 0.102 0.898 44 H 0.422 0.578 45 H 0.087 0.913 46 H 0.064 0.936 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.113 -8.407 -6.390 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.073 4.073 3 C -0.170 4.170 4 C -0.134 4.134 5 C -0.203 4.203 6 C 0.052 3.948 7 N -0.313 5.313 8 C 0.259 3.741 9 O -0.388 6.388 10 C 0.034 3.966 11 H 0.121 0.879 12 C -0.194 4.194 13 N -0.283 5.283 14 C -0.378 4.378 15 H 0.081 0.919 16 C -0.223 4.223 17 N -0.547 5.547 18 Si 0.773 3.227 19 H -0.184 1.184 20 H -0.234 1.234 21 H -0.215 1.215 22 C 0.035 3.965 23 C -0.157 4.157 24 C 0.331 3.669 25 O -0.449 6.449 26 O -0.325 6.325 27 C -0.137 4.137 28 C -0.168 4.168 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.160 0.840 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.258 0.742 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.039 0.961 42 H 0.139 0.861 43 H 0.120 0.880 44 H 0.283 0.717 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.688 -7.355 -6.051 18.352 hybrid contribution 1.516 0.749 0.572 1.785 sum -14.171 -6.606 -5.479 16.568 Atomic orbital electron populations 1.20886 0.88348 1.03874 1.03413 1.19962 0.97672 0.91483 0.98200 1.21194 0.93217 0.98829 1.03795 1.21174 0.95302 0.97178 0.99757 1.21657 1.01287 0.92762 1.04611 1.17979 0.91483 0.86152 0.99137 1.43966 1.11532 1.09065 1.66766 1.23266 0.81199 0.93771 0.75904 1.90695 1.69582 1.36452 1.42063 1.20947 0.85743 0.91478 0.98409 0.87888 1.21959 1.02809 1.01271 0.93396 1.43778 1.06065 1.50105 1.28305 1.18991 1.15484 1.13260 0.90023 0.91931 1.25929 1.02787 0.97179 0.96407 1.70098 1.37992 1.36681 1.09936 0.85586 0.80066 0.77590 0.79444 1.18373 1.23390 1.21546 1.20565 0.97925 0.90431 0.87587 1.21983 1.03235 0.97615 0.92849 1.23933 0.72964 0.78574 0.91401 1.90707 1.55558 1.65951 1.32663 1.84531 1.70976 1.33283 1.43705 1.19770 0.90386 0.97721 1.05859 1.20836 1.00337 0.92044 1.03563 0.89765 0.89913 0.90711 0.84005 0.86087 0.86746 0.74196 0.94634 0.90391 0.89621 0.94901 0.91520 0.96054 0.86088 0.87990 0.71709 0.89408 0.91737 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.60 71.24 0.68 -0.90 16 2 C -0.07 -1.72 5.88 -19.88 -0.12 -1.84 16 3 C -0.15 -4.01 9.70 22.29 0.22 -3.79 16 4 C -0.12 -3.86 10.04 22.25 0.22 -3.64 16 5 C -0.18 -7.32 8.80 22.39 0.20 -7.12 16 6 C 0.15 5.06 6.50 38.15 0.25 5.30 16 7 N -0.67 -21.15 4.99 -303.51 -1.51 -22.67 16 8 C 0.47 19.55 6.92 87.66 0.61 20.16 16 9 O -0.52 -27.89 12.40 -3.04 -0.04 -27.93 16 10 C 0.15 5.30 3.15 44.25 0.14 5.44 16 11 H 0.10 3.13 7.85 -2.39 -0.02 3.11 16 12 C -0.14 -3.87 8.75 71.98 0.63 -3.24 16 13 N -0.56 -25.98 2.09 -682.20 -1.43 -27.40 16 14 C -0.25 -12.94 7.77 84.03 0.65 -12.28 16 15 H 0.06 3.24 6.80 -2.91 -0.02 3.22 16 16 C -0.02 -1.39 5.11 84.86 0.43 -0.96 16 17 N -0.90 -55.73 11.23 21.65 0.24 -55.48 16 18 Si 0.94 46.08 29.58 68.60 2.03 48.11 16 19 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.31 -15.64 7.11 99.48 0.71 -14.94 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 22 C 0.16 7.41 4.52 86.38 0.39 7.80 16 23 C -0.12 -4.05 6.13 29.85 0.18 -3.87 16 24 C 0.49 16.50 8.33 71.23 0.59 17.09 16 25 O -0.56 -23.58 16.74 21.96 0.37 -23.21 16 26 O -0.51 -12.59 13.42 -51.40 -0.69 -13.28 16 27 C -0.13 -3.48 5.90 -19.74 -0.12 -3.59 16 28 C -0.11 -1.85 9.05 71.24 0.64 -1.21 16 29 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.08 0.98 5.94 -2.38 -0.01 0.97 16 31 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 32 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.12 3.77 8.06 -2.91 -0.02 3.74 16 34 H 0.11 5.67 5.34 -2.97 -0.02 5.66 16 35 H 0.42 9.45 6.86 -92.71 -0.64 8.81 16 36 H 0.03 1.20 7.16 -2.39 -0.02 1.18 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.09 1.71 7.87 -2.39 -0.02 1.69 16 39 H 0.24 14.77 8.31 -92.70 -0.77 14.00 16 40 H 0.07 3.77 5.40 -2.39 -0.01 3.76 16 41 H 0.02 0.99 7.93 -2.39 -0.02 0.97 16 42 H 0.12 3.32 8.14 -2.38 -0.02 3.30 16 43 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 44 H 0.42 6.48 9.10 -74.06 -0.67 5.81 16 45 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.06 1.05 6.87 -2.39 -0.02 1.03 16 47 H 0.09 1.17 5.94 -2.39 -0.01 1.15 16 Total: -1.00 -82.15 384.21 4.29 -77.86 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: -0.29 Total: 30.65 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 5.61 Total: 13.35 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -2.70 Total: -105.55 kcal Atomic # 8 Polarization: -64.06 SS G_CDS: -0.36 Total: -64.42 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -82.15 4.29 -77.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607856893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.511 kcal (2) G-P(sol) polarization free energy of solvation -82.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds