Wall clock time and date at job start Tue Mar 31 2020 18:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35656 * 116.99683 * 2 1 4 4 C 1.38703 * 120.15218 * 359.97438 * 3 2 1 5 5 C 1.38059 * 120.08452 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.80281 * 179.97438 * 5 4 3 7 7 C 1.38542 * 120.38891 * 0.02562 * 5 4 3 8 8 C 1.37786 * 120.30080 * 359.97438 * 7 5 4 9 9 C 1.39708 * 119.90837 * 359.76210 * 8 7 5 10 10 C 1.47532 * 120.19023 * 180.25450 * 9 8 7 11 11 O 1.21594 * 120.00432 * 226.84700 * 10 9 8 12 12 N 1.34784 * 120.00130 * 46.85294 * 10 9 8 13 13 C 1.47149 * 120.97946 * 5.27592 * 12 10 9 14 14 C 1.53715 * 108.15901 * 129.43527 * 13 12 10 15 15 O 1.42959 * 109.14666 * 52.53647 * 14 13 12 16 16 C 1.42958 * 114.16849 * 297.28599 * 15 14 13 17 17 H 1.08998 * 109.55821 * 302.63536 * 16 15 14 18 18 C 1.53006 * 109.51337 * 182.50265 * 16 15 14 19 19 N 1.46504 * 109.46440 * 65.25941 * 18 16 15 20 20 C 1.36934 * 119.99621 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00272 * 359.97438 * 20 19 18 22 22 C 1.38814 * 120.00333 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00232 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99563 * 359.97438 * 22 20 19 25 25 H 1.48494 * 109.47166 * 90.00573 * 24 22 20 26 26 H 1.48503 * 109.47334 * 210.00338 * 24 22 20 27 27 H 1.48498 * 109.47249 * 330.00121 * 24 22 20 28 28 C 1.47151 * 120.98383 * 185.56238 * 12 10 9 29 29 H 1.08994 * 109.47619 * 299.99782 * 1 2 3 30 30 H 1.09003 * 109.47417 * 60.00263 * 1 2 3 31 31 H 1.08997 * 109.47169 * 179.97438 * 1 2 3 32 32 H 1.08005 * 119.95927 * 359.97438 * 4 3 2 33 33 H 1.09000 * 109.46745 * 90.00388 * 6 5 4 34 34 H 1.09000 * 109.46923 * 210.00090 * 6 5 4 35 35 H 1.09000 * 109.47608 * 330.00588 * 6 5 4 36 36 H 1.07999 * 119.85004 * 179.97438 * 7 5 4 37 37 H 1.08003 * 120.04171 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.68381 * 249.21321 * 13 12 10 39 39 H 1.09000 * 109.68438 * 9.77117 * 13 12 10 40 40 H 1.09008 * 109.65703 * 292.56958 * 14 13 12 41 41 H 1.08996 * 109.44456 * 172.37853 * 14 13 12 42 42 H 1.08994 * 109.46771 * 185.25589 * 18 16 15 43 43 H 1.09000 * 109.47289 * 305.25850 * 18 16 15 44 44 H 0.96997 * 120.00376 * 359.97438 * 19 18 16 45 45 H 0.96999 * 120.00039 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.67815 * 350.23199 * 28 12 10 47 47 H 1.08997 * 109.68244 * 110.74376 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3740 -0.0005 5 6 1.9205 3.6034 0.0000 6 6 1.0968 4.8654 -0.0012 7 6 3.3036 3.6837 0.0005 8 6 4.0666 2.5364 0.0011 9 6 3.4440 1.2857 0.0061 10 6 4.2549 0.0533 0.0124 11 8 3.9882 -0.8540 -0.7520 12 7 5.2914 -0.0671 0.8655 13 6 5.5636 0.9660 1.8773 14 6 5.7157 0.2729 3.2409 15 8 6.6814 -0.7753 3.1288 16 6 6.3129 -1.8160 2.2206 17 1 5.3571 -2.2434 2.5237 18 6 7.3863 -2.9063 2.2299 19 7 7.4222 -3.5448 3.5479 20 6 8.3115 -4.5565 3.7946 21 1 8.9861 -4.8839 3.0173 22 6 8.3452 -5.1619 5.0433 23 7 9.1996 -6.1347 5.2801 24 14 7.1779 -4.5961 6.3873 25 1 5.9208 -5.3832 6.3149 26 1 7.8139 -4.8003 7.7137 27 1 6.8710 -3.1550 6.2022 28 6 6.1880 -1.2326 0.8085 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2137 2.3195 -0.0014 33 1 0.8971 5.1698 1.0262 34 1 1.6442 5.6560 -0.5145 35 1 0.1535 4.6831 -0.5160 36 1 3.7860 4.6500 0.0005 37 1 5.1446 2.6039 0.0019 38 1 6.4838 1.4931 1.6256 39 1 4.7338 1.6719 1.9137 40 1 4.7575 -0.1461 3.5482 41 1 6.0507 0.9989 3.9816 42 1 7.1526 -3.6527 1.4708 43 1 8.3580 -2.4614 2.0150 44 1 6.8166 -3.2505 4.2461 45 1 9.2234 -6.5575 6.1528 46 1 5.7719 -1.9833 0.1366 47 1 7.1698 -0.9232 0.4502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700165223.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:41 Heat of formation + Delta-G solvation = -89.130157 kcal Electronic energy + Delta-G solvation = -29153.435338 eV Core-core repulsion = 25108.542542 eV Total energy + Delta-G solvation = -4044.892797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.95494 -40.80685 -39.37161 -38.62201 -36.84015 -35.82468 -34.19621 -33.71206 -32.22048 -31.23380 -29.59016 -28.93417 -28.27391 -26.84258 -24.81933 -24.18695 -23.26503 -22.99649 -22.26420 -20.77510 -19.78612 -18.82297 -18.23890 -17.90043 -17.48556 -17.18048 -16.79710 -16.69685 -16.32649 -16.19909 -15.79750 -15.65914 -15.35534 -15.10315 -14.77209 -14.76759 -14.54724 -14.37346 -14.32794 -14.05394 -13.76864 -13.34082 -13.14120 -13.01759 -12.96354 -12.87411 -12.65292 -12.43273 -12.38485 -12.14600 -12.05596 -11.92319 -11.84037 -11.67156 -11.25110 -11.02605 -10.94710 -9.88844 -9.66661 -9.33424 -9.25131 -8.04020 -5.37745 -0.10467 0.36112 1.36600 1.39547 1.47987 1.54974 1.78393 2.25974 2.47558 2.63905 2.68398 3.27528 3.31994 3.41460 3.74374 3.82056 3.83611 3.86933 4.01876 4.02872 4.10231 4.22184 4.26065 4.28715 4.30779 4.32653 4.44209 4.48818 4.62092 4.64160 4.66110 4.71630 4.79838 4.80748 4.86933 4.90253 5.02758 5.09977 5.23315 5.26362 5.28300 5.53678 5.72295 5.74998 6.13752 6.18283 6.20181 6.35754 7.00118 7.04862 7.79894 8.00160 9.17254 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019231 B = 0.002607 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.603983 B =10738.928475 C =10926.660537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.159 3.841 4 C -0.219 4.219 5 C -0.021 4.021 6 C -0.119 4.119 7 C -0.160 4.160 8 C -0.044 4.044 9 C -0.200 4.200 10 C 0.566 3.434 11 O -0.574 6.574 12 N -0.610 5.610 13 C 0.073 3.927 14 C 0.038 3.962 15 O -0.385 6.385 16 C 0.085 3.915 17 H 0.051 0.949 18 C 0.164 3.836 19 N -0.754 5.754 20 C -0.236 4.236 21 H 0.060 0.940 22 C -0.063 4.063 23 N -0.982 5.982 24 Si 0.955 3.045 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.255 1.255 28 C 0.095 3.905 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.153 0.847 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.046 0.954 41 H 0.134 0.866 42 H 0.048 0.952 43 H 0.039 0.961 44 H 0.366 0.634 45 H 0.259 0.741 46 H 0.089 0.911 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.020 30.527 -11.057 38.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.112 3.888 4 C -0.238 4.238 5 C -0.021 4.021 6 C -0.175 4.175 7 C -0.178 4.178 8 C -0.062 4.062 9 C -0.204 4.204 10 C 0.356 3.644 11 O -0.453 6.453 12 N -0.344 5.344 13 C -0.048 4.048 14 C -0.039 4.039 15 O -0.303 6.303 16 C 0.026 3.974 17 H 0.069 0.931 18 C 0.037 3.963 19 N -0.400 5.400 20 C -0.366 4.366 21 H 0.078 0.922 22 C -0.255 4.255 23 N -0.632 5.632 24 Si 0.782 3.218 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.180 1.180 28 C -0.029 4.029 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.125 0.875 32 H 0.171 0.829 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.179 0.821 37 H 0.168 0.832 38 H 0.120 0.880 39 H 0.135 0.865 40 H 0.065 0.935 41 H 0.152 0.848 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.199 0.801 45 H 0.068 0.932 46 H 0.107 0.893 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.752 29.707 -11.426 37.996 hybrid contribution -0.690 -0.698 0.745 1.232 sum -21.442 29.009 -10.681 37.622 Atomic orbital electron populations 1.23382 0.76145 1.05354 1.02773 1.86175 1.23785 1.27306 1.87516 1.19250 0.90954 0.85408 0.93239 1.21324 1.01106 0.90871 1.10456 1.20318 0.94566 0.95247 0.91967 1.20969 0.99472 0.93146 1.03909 1.21250 0.93074 0.99103 1.04347 1.21356 1.01113 0.89535 0.94190 1.19164 0.91013 0.93915 1.16284 1.18596 0.79284 0.86994 0.79513 1.90759 1.69713 1.42544 1.42299 1.48131 1.28692 1.22991 1.34537 1.22923 1.04550 0.90414 0.86943 1.23330 0.92730 0.90329 0.97531 1.88076 1.45338 1.33331 1.63597 1.22485 0.97554 0.88100 0.89244 0.93119 1.20735 0.96438 0.91705 0.87389 1.42579 1.44150 1.41765 1.11487 1.19054 1.11615 1.08466 0.97504 0.92171 1.25494 1.01167 0.98712 1.00090 1.69878 1.41058 1.28775 1.23518 0.85396 0.78638 0.79067 0.78675 1.20514 1.21747 1.17957 1.22099 0.94906 0.89063 0.96810 0.90764 0.90997 0.87506 0.82900 0.89270 0.89557 0.90496 0.82098 0.83165 0.87997 0.86537 0.93546 0.84811 0.93410 0.94332 0.80073 0.93232 0.89288 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -8.50 9.47 -78.69 -0.75 -9.24 16 3 C 0.16 3.51 6.67 22.84 0.15 3.66 16 4 C -0.22 -3.14 8.67 22.34 0.19 -2.94 16 5 C -0.02 -0.22 5.88 -19.83 -0.12 -0.33 16 6 C -0.12 -0.47 10.00 71.24 0.71 0.24 16 7 C -0.16 -1.64 9.67 22.24 0.22 -1.42 16 8 C -0.04 -0.65 7.56 22.52 0.17 -0.48 16 9 C -0.20 -4.59 4.89 -20.01 -0.10 -4.69 16 10 C 0.57 16.90 7.00 86.69 0.61 17.51 16 11 O -0.57 -22.24 15.90 7.02 0.11 -22.13 16 12 N -0.61 -15.92 3.01 -820.29 -2.47 -18.39 16 13 C 0.07 1.34 5.33 86.50 0.46 1.80 16 14 C 0.04 0.84 7.00 72.22 0.51 1.35 16 15 O -0.38 -12.44 10.33 -148.98 -1.54 -13.98 16 16 C 0.09 2.88 2.81 30.69 0.09 2.96 16 17 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 18 C 0.16 6.71 5.93 86.38 0.51 7.22 16 19 N -0.75 -38.00 5.36 -343.44 -1.84 -39.84 16 20 C -0.24 -14.12 10.47 84.03 0.88 -13.24 16 21 H 0.06 3.89 8.06 -2.91 -0.02 3.87 16 22 C -0.06 -3.87 5.50 84.86 0.47 -3.41 16 23 N -0.98 -64.71 13.97 21.65 0.30 -64.41 16 24 Si 0.96 47.59 27.74 68.60 1.90 49.49 16 25 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 26 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 27 H -0.25 -11.76 6.52 99.48 0.65 -11.11 16 28 C 0.09 2.77 5.94 86.35 0.51 3.29 16 29 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 30 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 31 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.15 1.45 6.30 -2.91 -0.02 1.43 16 33 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.09 0.15 8.08 -2.39 -0.02 0.14 16 35 H 0.08 0.23 8.08 -2.39 -0.02 0.21 16 36 H 0.16 0.67 8.06 -2.91 -0.02 0.64 16 37 H 0.15 1.68 7.20 -2.91 -0.02 1.66 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.12 1.66 5.28 -2.39 -0.01 1.65 16 40 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.37 17.96 5.53 -92.71 -0.51 17.44 16 45 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 46 H 0.09 2.88 7.06 -2.39 -0.02 2.87 16 47 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -85.08 380.20 2.51 -82.57 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.41 Total: 23.05 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 6.37 Total: 12.88 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -4.01 Total: -122.64 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -2.17 Total: -45.35 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.90 Total: 49.49 kcal Total: -85.08 2.51 -82.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700165223.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.558 kcal (2) G-P(sol) polarization free energy of solvation -85.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds