Wall clock time and date at job start Tue Mar 31 2020 17:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 112.85110 * 2 1 4 4 O 1.21283 * 120.00164 * 228.79864 * 3 2 1 5 5 N 1.34777 * 120.00306 * 48.79952 * 3 2 1 6 6 C 1.47020 * 125.65343 * 180.02562 * 5 3 2 7 7 C 1.54320 * 107.27457 * 181.02163 * 6 5 3 8 8 H 1.09001 * 110.71813 * 140.55577 * 7 6 5 9 9 C 1.52997 * 110.72112 * 263.82856 * 7 6 5 10 10 N 1.46493 * 109.47344 * 293.54610 * 9 7 6 11 11 C 1.36944 * 120.00026 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99644 * 0.02562 * 11 10 9 13 13 C 1.38813 * 119.99864 * 179.97438 * 11 10 9 14 14 N 1.31615 * 119.99837 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99760 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47486 * 60.00247 * 15 13 11 17 17 H 1.48505 * 109.47210 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47236 * 299.99653 * 15 13 11 19 19 C 1.55162 * 102.93921 * 22.19383 * 7 6 5 20 20 H 1.08998 * 111.00392 * 82.57294 * 19 7 6 21 21 C 1.53001 * 111.00100 * 206.41942 * 19 7 6 22 22 F 1.39905 * 109.46999 * 60.00530 * 21 19 7 23 23 F 1.39902 * 109.46953 * 179.97438 * 21 19 7 24 24 F 1.39894 * 109.47401 * 300.00248 * 21 19 7 25 25 C 1.47430 * 125.64585 * 359.69116 * 5 3 2 26 26 C 1.53782 * 113.61734 * 228.79873 * 2 1 3 27 27 C 1.53781 * 87.08260 * 220.02231 * 26 2 1 28 28 C 1.53786 * 87.17350 * 25.39213 * 27 26 2 29 29 H 1.08996 * 109.47659 * 191.19490 * 1 2 3 30 30 H 1.09003 * 109.47607 * 311.20386 * 1 2 3 31 31 H 1.09003 * 109.47085 * 71.19884 * 1 2 3 32 32 H 1.09004 * 109.88017 * 300.44485 * 6 5 3 33 33 H 1.09002 * 109.88259 * 61.60353 * 6 5 3 34 34 H 1.09008 * 109.46760 * 53.55255 * 9 7 6 35 35 H 1.09001 * 109.47144 * 173.54314 * 9 7 6 36 36 H 0.97002 * 120.00240 * 359.97438 * 10 9 7 37 37 H 0.97008 * 119.99598 * 179.97438 * 14 13 11 38 38 H 1.08998 * 110.36939 * 274.75084 * 25 5 3 39 39 H 1.09002 * 110.36202 * 37.07153 * 25 5 3 40 40 H 1.09001 * 113.61250 * 105.47049 * 26 2 1 41 41 H 1.08996 * 113.68722 * 334.58363 * 26 2 1 42 42 H 1.09002 * 113.61445 * 139.98212 * 27 26 2 43 43 H 1.09002 * 113.61408 * 270.79943 * 27 26 2 44 44 H 1.08993 * 113.61491 * 89.15923 * 28 27 26 45 45 H 1.09000 * 113.61138 * 220.06261 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9882 1.6789 -0.7903 5 7 1.6684 2.3083 0.8782 6 6 2.1483 3.6937 0.9867 7 6 1.3701 4.3592 2.1413 8 1 2.0249 5.0059 2.7254 9 6 0.1708 5.1431 1.6047 10 7 0.6456 6.2793 0.8111 11 6 -0.2544 7.1293 0.2257 12 1 -1.3142 6.9623 0.3495 13 6 0.1955 8.2062 -0.5258 14 7 1.4871 8.4099 -0.6761 15 14 -1.0321 9.3662 -1.3237 16 1 -1.8783 9.9895 -0.2746 17 1 -0.3023 10.4255 -2.0657 18 1 -1.8917 8.6055 -2.2658 19 6 0.8994 3.1466 2.9872 20 1 1.6884 2.8091 3.6592 21 6 -0.3743 3.4824 3.7656 22 9 -1.3919 3.8259 2.8690 23 9 -0.7700 2.3693 4.5151 24 9 -0.1261 4.5589 4.6240 25 6 0.6126 2.0936 1.8845 26 6 2.1460 -0.9281 -1.0601 27 6 3.1923 -1.3136 -0.0011 28 6 2.1479 -0.9296 1.0604 29 1 -0.3634 -1.0080 0.1995 30 1 -0.3634 0.6770 0.7732 31 1 -0.3633 0.3312 -0.9729 32 1 3.2159 3.7000 1.2071 33 1 1.9569 4.2264 0.0552 34 1 -0.4383 4.4914 0.9782 35 1 -0.4278 5.5078 2.4394 36 1 1.5975 6.4295 0.7003 37 1 1.8015 9.1623 -1.2016 38 1 -0.3706 2.2597 1.4442 39 1 0.6798 1.0864 2.2958 40 1 2.5650 -0.3971 -1.9149 41 1 1.4954 -1.7526 -1.3516 42 1 3.4443 -2.3741 -0.0021 43 1 4.0717 -0.6696 -0.0014 44 1 1.4969 -1.7542 1.3508 45 1 2.5685 -0.3998 1.9151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700926653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:31 Heat of formation + Delta-G solvation = -141.262706 kcal Electronic energy + Delta-G solvation = -31207.960714 eV Core-core repulsion = 26618.950540 eV Total energy + Delta-G solvation = -4589.010174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.16123 -47.65194 -47.53661 -41.02916 -38.91876 -37.03398 -34.67899 -32.73090 -31.11422 -30.51798 -28.83516 -26.21489 -25.97569 -25.64005 -24.10222 -22.97451 -22.09241 -21.20336 -20.13220 -18.85201 -18.51090 -18.17219 -17.42596 -16.86390 -16.68157 -16.16616 -15.59359 -15.09911 -14.81801 -14.54204 -14.40311 -14.24818 -14.09797 -13.98251 -13.89963 -13.74405 -13.72857 -13.52700 -13.34283 -12.92150 -12.82875 -12.72329 -12.49854 -12.45247 -12.08313 -11.89016 -11.51366 -11.45613 -11.11126 -11.03545 -10.83026 -10.74336 -10.52306 -10.48521 -10.39435 -10.08117 -9.72583 -9.69199 -8.88850 -8.67804 -6.95906 -5.77429 -3.07087 2.54311 2.58296 2.96783 3.44977 3.49018 3.50108 3.61421 3.71222 3.96785 4.22289 4.29161 4.36193 4.48873 4.55856 4.62072 4.63071 4.79601 4.82828 5.04937 5.17081 5.18421 5.24049 5.39128 5.44072 5.45689 5.52859 5.54843 5.59597 5.68794 5.70878 5.85065 5.92811 5.93957 6.04656 6.09255 6.15120 6.25304 6.30855 6.55749 6.66917 7.43502 7.69663 8.14862 8.40343 9.51976 10.05848 10.40918 11.45136 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.004255 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.299328 B = 6578.752753 C = 8270.207084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C 0.554 3.446 4 O -0.529 6.529 5 N -0.609 5.609 6 C 0.114 3.886 7 C -0.099 4.099 8 H 0.105 0.895 9 C 0.150 3.850 10 N -0.729 5.729 11 C -0.242 4.242 12 H 0.070 0.930 13 C -0.010 4.010 14 N -0.932 5.932 15 Si 0.908 3.092 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.286 1.286 19 C -0.152 4.152 20 H 0.128 0.872 21 C 0.466 3.534 22 F -0.169 7.169 23 F -0.187 7.187 24 F -0.175 7.175 25 C 0.109 3.891 26 C -0.117 4.117 27 C -0.141 4.141 28 C -0.122 4.122 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.029 0.971 35 H 0.032 0.968 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.586 -21.051 8.834 22.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C 0.343 3.657 4 O -0.404 6.404 5 N -0.343 5.343 6 C -0.008 4.008 7 C -0.119 4.119 8 H 0.124 0.876 9 C 0.023 3.977 10 N -0.374 5.374 11 C -0.373 4.373 12 H 0.088 0.912 13 C -0.207 4.207 14 N -0.580 5.580 15 Si 0.738 3.262 16 H -0.212 1.212 17 H -0.217 1.217 18 H -0.212 1.212 19 C -0.173 4.173 20 H 0.146 0.854 21 C 0.411 3.589 22 F -0.150 7.150 23 F -0.169 7.169 24 F -0.156 7.156 25 C -0.015 4.015 26 C -0.154 4.154 27 C -0.178 4.178 28 C -0.160 4.160 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.218 0.782 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.248 -20.844 8.286 22.432 hybrid contribution -0.625 0.913 -0.238 1.132 sum -0.873 -19.931 8.048 21.512 Atomic orbital electron populations 1.22070 0.92324 1.02977 1.03502 1.21943 0.96732 0.91922 1.00598 1.19588 0.81862 0.85015 0.79281 1.90718 1.31180 1.80146 1.38402 1.48281 1.38524 1.12532 1.34968 1.22119 0.97962 0.80404 1.00280 1.22591 0.99912 0.94303 0.95054 0.87634 1.21141 0.92095 0.89711 0.94760 1.42307 1.06571 1.28426 1.60101 1.19135 0.89310 1.04341 1.24465 0.91190 1.24729 0.95933 0.99054 1.00939 1.69644 1.11842 1.31715 1.44813 0.86265 0.80157 0.80592 0.79150 1.21214 1.21656 1.21248 1.23778 0.94948 1.00239 0.98296 0.85362 1.20106 0.86162 0.74433 0.78201 1.93231 1.62861 1.91902 1.67043 1.93175 1.92314 1.53235 1.78170 1.93213 1.94238 1.56484 1.71701 1.22490 0.93029 0.98196 0.87741 1.22836 0.97534 0.97838 0.97230 1.22839 0.97541 1.01448 0.95975 1.23006 0.98329 0.98311 0.96333 0.91394 0.91030 0.91716 0.91056 0.88705 0.95328 0.95023 0.78229 0.93394 0.89281 0.89094 0.89984 0.89439 0.91229 0.89772 0.88968 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.88 37.15 0.33 -1.03 16 2 C -0.11 -1.14 0.77 -154.76 -0.12 -1.26 16 3 C 0.55 8.03 6.72 -10.99 -0.07 7.96 16 4 O -0.53 -9.75 16.08 5.55 0.09 -9.66 16 5 N -0.61 -8.27 3.32 -170.37 -0.57 -8.83 16 6 C 0.11 1.77 6.26 -3.07 -0.02 1.75 16 7 C -0.10 -1.45 2.74 -88.79 -0.24 -1.70 16 8 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 9 C 0.15 2.88 4.01 -4.05 -0.02 2.87 16 10 N -0.73 -18.02 5.13 -59.91 -0.31 -18.33 16 11 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 12 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 13 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 14 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 15 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 19 C -0.15 -1.68 3.02 -88.34 -0.27 -1.94 16 20 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 21 C 0.47 5.67 2.41 37.16 0.09 5.76 16 22 F -0.17 -2.40 12.61 2.25 0.03 -2.37 16 23 F -0.19 -2.05 17.25 2.25 0.04 -2.01 16 24 F -0.18 -2.40 16.49 2.25 0.04 -2.36 16 25 C 0.11 1.17 4.03 -2.40 -0.01 1.16 16 26 C -0.12 -1.17 7.02 -25.92 -0.18 -1.35 16 27 C -0.14 -1.29 7.73 -25.92 -0.20 -1.49 16 28 C -0.12 -1.01 6.81 -25.82 -0.18 -1.18 16 29 H 0.07 0.47 7.95 -51.93 -0.41 0.05 16 30 H 0.07 0.63 3.93 -51.93 -0.20 0.43 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.84 7.33 -51.93 -0.38 1.46 16 34 H 0.03 0.57 6.91 -51.92 -0.36 0.21 16 35 H 0.03 0.63 5.71 -51.93 -0.30 0.34 16 36 H 0.38 9.91 7.40 -40.82 -0.30 9.60 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.09 1.00 5.80 -51.93 -0.30 0.70 16 39 H 0.09 0.74 6.74 -51.93 -0.35 0.39 16 40 H 0.08 1.00 7.43 -51.93 -0.39 0.62 16 41 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 44 H 0.09 0.58 7.97 -51.93 -0.41 0.17 16 45 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 LS Contribution 359.03 15.07 5.41 5.41 Total: -1.00 -32.50 359.03 -7.03 -39.53 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.33 Total: 6.23 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.13 Total: 2.25 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.15 Total: -54.54 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 0.10 Total: -6.74 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.50 -7.03 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700926653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.737 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds