Wall clock time and date at job start Tue Mar 31 2020 17:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 112.84834 * 2 1 4 4 O 1.21280 * 119.99962 * 237.11042 * 3 2 1 5 5 N 1.34777 * 120.00319 * 57.10491 * 3 2 1 6 6 C 1.48148 * 127.83555 * 355.55218 * 5 3 2 7 7 C 1.54388 * 104.61487 * 140.41300 * 6 5 3 8 8 H 1.09002 * 110.34675 * 264.99715 * 7 6 5 9 9 C 1.53000 * 110.43287 * 142.78567 * 7 6 5 10 10 F 1.39908 * 109.46793 * 302.93896 * 9 7 6 11 11 F 1.39899 * 109.47378 * 62.93377 * 9 7 6 12 12 F 1.39898 * 109.47266 * 182.93904 * 9 7 6 13 13 C 1.54286 * 104.96154 * 23.86867 * 7 6 5 14 14 H 1.08998 * 110.34220 * 118.86568 * 13 7 6 15 15 C 1.52994 * 110.34542 * 241.02231 * 13 7 6 16 16 N 1.46502 * 109.47490 * 184.99788 * 15 13 7 17 17 C 1.36936 * 120.00126 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00010 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99686 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00161 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99880 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46917 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47206 * 119.99704 * 21 19 17 24 24 H 1.48501 * 109.46901 * 240.00056 * 21 19 17 25 25 C 1.48147 * 127.83791 * 175.55456 * 5 3 2 26 26 C 1.53783 * 113.69423 * 131.26257 * 2 1 3 27 27 C 1.53778 * 87.07866 * 89.12913 * 26 2 1 28 28 C 1.53776 * 113.61739 * 228.80290 * 2 1 3 29 29 H 1.08996 * 109.47312 * 53.69231 * 1 2 3 30 30 H 1.08998 * 109.46749 * 173.69185 * 1 2 3 31 31 H 1.08996 * 109.47315 * 293.68288 * 1 2 3 32 32 H 1.09003 * 110.40902 * 21.63386 * 6 5 3 33 33 H 1.08998 * 110.40973 * 259.20074 * 6 5 3 34 34 H 1.09006 * 109.47202 * 304.99850 * 15 13 7 35 35 H 1.09004 * 109.47000 * 64.99970 * 15 13 7 36 36 H 0.97004 * 119.99272 * 0.02562 * 16 15 13 37 37 H 0.97004 * 119.99946 * 179.97438 * 20 19 17 38 38 H 1.08997 * 110.40488 * 100.80451 * 25 5 3 39 39 H 1.08994 * 110.50929 * 338.41983 * 25 5 3 40 40 H 1.08993 * 113.61610 * 203.68125 * 26 2 1 41 41 H 1.09007 * 113.61101 * 334.58418 * 26 2 1 42 42 H 1.09002 * 113.61700 * 270.88152 * 27 26 2 43 43 H 1.09001 * 113.69226 * 139.99040 * 27 26 2 44 44 H 1.09003 * 113.61587 * 25.34694 * 28 2 1 45 45 H 1.09003 * 113.61481 * 156.16630 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1151 1.3888 0.0000 4 8 2.8762 1.7261 -0.8820 5 7 1.7927 2.2560 0.9800 6 6 0.8209 2.0623 2.0813 7 6 1.4942 2.7057 3.3127 8 1 2.0246 1.9503 3.8925 9 6 0.4523 3.4094 4.1845 10 9 -0.2282 4.3630 3.4198 11 9 -0.4591 2.4676 4.6740 12 9 1.0913 4.0410 5.2568 13 6 2.4890 3.7321 2.7318 14 1 2.2341 4.7378 3.0661 15 6 3.9189 3.3809 3.1473 16 7 4.8327 4.4298 2.6877 17 6 6.1739 4.3309 2.9456 18 1 6.5580 3.4797 3.4882 19 6 7.0394 5.3250 2.5106 20 7 6.5711 6.3625 1.8498 21 14 8.8692 5.1897 2.8617 22 1 9.1375 3.9377 3.6139 23 1 9.6189 5.1680 1.5802 24 1 9.3055 6.3559 3.6709 25 6 2.3296 3.6190 1.2003 26 6 2.1480 -0.9287 1.0585 27 6 2.0951 -2.0419 -0.0011 28 6 2.1461 -0.9280 -1.0602 29 1 -0.3634 0.6085 -0.8281 30 1 -0.3633 -1.0214 -0.1129 31 1 -0.3634 0.4128 0.9411 32 1 0.6488 0.9999 2.2540 33 1 -0.1174 2.5681 1.8536 34 1 3.9729 3.3023 4.2332 35 1 4.2040 2.4289 2.6994 36 1 4.4874 5.1945 2.2007 37 1 7.1760 7.0574 1.5461 38 1 1.6269 4.3679 0.8350 39 1 3.2954 3.7332 0.7082 40 1 3.1609 -0.6485 1.3474 41 1 1.4973 -1.1093 1.9143 42 1 1.1596 -2.6013 -0.0004 43 1 2.9739 -2.6868 -0.0031 44 1 1.4940 -1.1080 -1.9149 45 1 3.1580 -0.6468 -1.3516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700926654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:33 Heat of formation + Delta-G solvation = -175.119897 kcal Electronic energy + Delta-G solvation = -30954.046300 eV Core-core repulsion = 26363.567968 eV Total energy + Delta-G solvation = -4590.478332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -51.10570 -48.57939 -48.56239 -41.86027 -39.92465 -38.34264 -36.49490 -34.08222 -32.76885 -31.16605 -30.01547 -27.58293 -27.01334 -26.55867 -25.64642 -24.77890 -23.12050 -21.70491 -21.14594 -19.67887 -19.55030 -19.17118 -19.01246 -18.60010 -17.89449 -17.15904 -16.70790 -16.53574 -16.00451 -15.73424 -15.52609 -15.46542 -15.22210 -15.17224 -14.99070 -14.86040 -14.69875 -14.66378 -14.49259 -14.39844 -13.86253 -13.55711 -13.33464 -13.25744 -13.16571 -13.12316 -12.97639 -12.83333 -12.53558 -12.34576 -12.17350 -12.10357 -12.04908 -11.93423 -11.71123 -11.41608 -11.18325 -11.01082 -10.63619 -9.90295 -9.05284 -7.98769 -5.28075 1.44134 1.45653 1.50642 1.55181 1.60509 1.92046 2.50972 2.71857 2.74946 2.93681 3.33533 3.36252 3.42564 3.55684 3.58748 3.74092 3.77972 3.87869 3.91668 3.97390 4.08186 4.22670 4.35775 4.38427 4.55537 4.65950 4.67799 4.70362 4.77925 4.81324 4.86789 4.89220 4.93088 5.02058 5.07094 5.08959 5.17631 5.22489 5.30022 5.45434 5.55531 6.22937 6.45710 7.07758 7.29740 8.02890 8.25668 9.24918 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.009005 B = 0.004574 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.513351 B = 6120.389289 C = 8307.079864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 C 0.540 3.460 4 O -0.590 6.590 5 N -0.613 5.613 6 C 0.110 3.890 7 C -0.140 4.140 8 H 0.147 0.853 9 C 0.469 3.531 10 F -0.183 7.183 11 F -0.173 7.173 12 F -0.187 7.187 13 C -0.090 4.090 14 H 0.093 0.907 15 C 0.167 3.833 16 N -0.743 5.743 17 C -0.246 4.246 18 H 0.075 0.925 19 C -0.073 4.073 20 N -0.968 5.968 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.296 1.296 24 H -0.290 1.290 25 C 0.110 3.890 26 C -0.122 4.122 27 C -0.123 4.123 28 C -0.125 4.125 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.033 0.967 35 H 0.016 0.984 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.653 -17.162 2.478 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.108 4.108 3 C 0.331 3.669 4 O -0.469 6.469 5 N -0.345 5.345 6 C -0.012 4.012 7 C -0.161 4.161 8 H 0.165 0.835 9 C 0.414 3.586 10 F -0.164 7.164 11 F -0.155 7.155 12 F -0.168 7.168 13 C -0.110 4.110 14 H 0.111 0.889 15 C 0.041 3.959 16 N -0.386 5.386 17 C -0.377 4.377 18 H 0.093 0.907 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.801 3.199 22 H -0.189 1.189 23 H -0.223 1.223 24 H -0.217 1.217 25 C -0.013 4.013 26 C -0.159 4.159 27 C -0.160 4.160 28 C -0.163 4.163 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.149 0.851 33 H 0.120 0.880 34 H 0.051 0.949 35 H 0.034 0.966 36 H 0.206 0.794 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.105 -17.144 2.018 26.499 hybrid contribution 1.384 1.326 -0.164 1.924 sum -18.721 -15.819 1.853 24.579 Atomic orbital electron populations 1.21787 0.88477 1.04741 1.03455 1.22318 0.98970 0.87899 1.01572 1.21051 0.79917 0.86813 0.79115 1.90712 1.38937 1.79107 1.38168 1.48916 1.42229 1.15360 1.28015 1.22725 0.91829 1.04207 0.82483 1.23472 0.94851 0.99626 0.98144 0.83531 1.20197 0.81733 0.77425 0.79241 1.93188 1.81629 1.66261 1.75358 1.93202 1.69068 1.64385 1.88799 1.93216 1.81786 1.83446 1.58402 1.22137 0.94699 0.99420 0.94746 0.88866 1.20751 0.87445 0.91048 0.96693 1.42507 1.03851 1.24431 1.67818 1.19615 0.84913 1.04448 1.28757 0.90677 1.25559 1.02441 0.97101 1.01450 1.69817 1.35188 1.12158 1.44654 0.85096 0.80249 0.77622 0.76935 1.18947 1.22326 1.21654 1.22284 0.99687 0.84524 0.94771 1.22972 1.00834 0.94829 0.97279 1.22814 1.03946 0.95414 0.93854 1.22891 1.00628 0.95546 0.97276 0.92633 0.88490 0.89721 0.85086 0.87990 0.94870 0.96645 0.79358 0.93977 0.89756 0.92630 0.91948 0.87468 0.86875 0.90908 0.89951 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.65 71.98 0.62 -0.86 16 2 C -0.10 -2.00 0.72 -52.40 -0.04 -2.04 16 3 C 0.54 16.20 6.96 87.66 0.61 16.81 16 4 O -0.59 -24.68 16.29 -3.03 -0.05 -24.73 16 5 N -0.61 -16.13 3.32 -807.95 -2.68 -18.81 16 6 C 0.11 1.81 4.92 86.53 0.43 2.24 16 7 C -0.14 -2.77 2.72 -9.89 -0.03 -2.80 16 8 H 0.15 2.44 7.71 -2.39 -0.02 2.42 16 9 C 0.47 9.28 2.52 71.98 0.18 9.46 16 10 F -0.18 -3.90 16.05 44.97 0.72 -3.18 16 11 F -0.17 -2.90 17.14 44.97 0.77 -2.13 16 12 F -0.19 -4.60 17.00 44.97 0.76 -3.83 16 13 C -0.09 -2.67 2.38 -9.89 -0.02 -2.70 16 14 H 0.09 2.88 7.40 -2.39 -0.02 2.86 16 15 C 0.17 6.47 5.37 86.38 0.46 6.93 16 16 N -0.74 -38.15 5.21 -343.45 -1.79 -39.94 16 17 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 18 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 19 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 20 N -0.97 -60.60 13.06 21.65 0.28 -60.31 16 21 Si 0.97 47.30 29.55 68.60 2.03 49.33 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 23 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 24 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 25 C 0.11 3.55 6.46 86.54 0.56 4.11 16 26 C -0.12 -1.88 6.70 31.12 0.21 -1.67 16 27 C -0.12 -1.61 7.73 31.12 0.24 -1.37 16 28 C -0.13 -2.51 6.94 31.12 0.22 -2.29 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.66 7.32 -2.39 -0.02 0.64 16 31 H 0.08 0.68 5.29 -2.39 -0.01 0.67 16 32 H 0.13 1.32 5.29 -2.39 -0.01 1.30 16 33 H 0.10 1.38 7.28 -2.39 -0.02 1.37 16 34 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.37 20.48 7.61 -92.71 -0.71 19.77 16 37 H 0.25 15.24 8.31 -92.71 -0.77 14.46 16 38 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.06 2.37 7.36 -2.39 -0.02 2.36 16 40 H 0.06 1.30 8.09 -2.39 -0.02 1.28 16 41 H 0.11 0.98 7.84 -2.38 -0.02 0.96 16 42 H 0.11 0.85 7.62 -2.39 -0.02 0.83 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.08 1.42 8.10 -2.39 -0.02 1.40 16 45 H 0.06 1.58 7.55 -2.39 -0.02 1.56 16 Total: -1.00 -76.31 367.79 5.11 -71.19 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.32 Total: 23.57 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 4.75 Total: 8.84 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -4.19 Total: -119.06 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.05 Total: -24.73 kcal Atomic # 9 Polarization: -11.40 SS G_CDS: 2.26 Total: -9.14 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -76.31 5.11 -71.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700926654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.927 kcal (2) G-P(sol) polarization free energy of solvation -76.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds